Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406553.1

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Reverse (-)

51 .. 1290

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggcatttcgactcttacgtgttaatggatatgatgtctctgcagatcggttaaatcaattttcagaagaccatttctttgattcccttggaggatatctaagggacactgatgctgcattagaactgtttagggcatcggaagtcatcattcatccagatgaatcagttctagagaaacaaaattactggacaaggaatttcctaaaacaggaattttctaataatttaactcagcctcacagaatcaataagcatattggcctagaggtggttgatgctcttaagtttccttcctatgctactttgggtcggttatcgagcaggagggcaatgatatcttacaacaccagcagtacaaggattttaaaatcttcttatcgacttcctaaaactggcagtggaagacttcaatacgtgccaatcgatacatcgggaagaactcgagcatctttcaaggtagatgttcctcctcctcctcctcctcttttctctgtctttgagctgtttgttagtgatgtttccaccttgatgtcatatgaatcactgagagtgcaggttgtggaggttggctctttttggtgggttatcgagagcagattagacaagctaaaatttgccaggcagaagctggcttactgttatttcactgctgctggaacccttttccctcctgaactatcagatgctcgcatatcatgggccaaaaacggagtacttacaactgtggtcgatgatttctttgacgttggaggttccgaagaggaactagtaaaccttatacaattggttgagaagtatgtttcattccacattccttttcaattggccattgcatttgttgttaattggttcaaagtttctactctgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

6.98

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	3 cut(s)	199, 215, 614
AfaI	GTAC	2 cut(s)	358, 717
AfiI	CCNNNNNNNGG	3 cut(s)	211, 271, 395
AflII	CTTAAG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	413, 457, 824, 856
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	3 cut(s)	505, 610, 631
AluI	AGCT	3 cut(s)	505, 610, 631
Alw26I	GTCTC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	631
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	3 cut(s)	262, 702, 828
ApeKI	GCWGC	2 cut(s)	116, 653
ApoI	RAATTY	3 cut(s)	199, 215, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	702
AvaI	CYCGRG	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	830
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	2 cut(s)	75, 412
BbvI	GCAGC	2 cut(s)	103, 640
BciT130I	CCWGG	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	3 cut(s)	173, 266, 770
BfmI	CTRYAG	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	2 cut(s)	117, 654
BlsI	GCNGC	2 cut(s)	118, 655
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	2 cut(s)	661, 757
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	5 cut(s)	103, 146, 268, 458, 676
BpiI	GAAGAC	2 cut(s)	75, 412
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	2 cut(s)	20, 418
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 271, 395
Bse1I	ACTGG	2 cut(s)	194, 400
Bse3DI	GCAATG	2 cut(s)	339, 831
BseBI	CCWGG	1 cut(s)	622
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	211, 271, 395
BseMI	GCAATG	2 cut(s)	339, 831
BseMII	CTCAG	2 cut(s)	248, 539
BseNI	ACTGG	2 cut(s)	194, 400
BseRI	GAGGAG	5 cut(s)	462, 465, 468, 471, 474
BseXI	GCAGC	2 cut(s)	103, 640
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	264, 704, 830
BshVI	ATCGAT	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	211, 271, 395
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	264, 704, 830
BsoBI	CYCGRG	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	3 cut(s)	264, 704, 830
BspCNI	CTCAG	2 cut(s)	247, 540
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	661, 757
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	339, 831
BsrI	ACTGG	2 cut(s)	194, 400
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	3 cut(s)	129, 641, 727
Bst6I	CTCTTC	1 cut(s)	756
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	2 cut(s)	20, 418
BstC8I	GCNNGC	2 cut(s)	633, 691
BstDEI	CTNAG	3 cut(s)	101, 234, 548
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	103, 640
BstV2I	GAAGAC	2 cut(s)	75, 412
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	264, 704, 830
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	406, 648
BtsIMutI	CAGTG	4 cut(s)	108, 406, 545, 648
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	633, 691
CaiI	CAGNNNCTG	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	357, 716
CviAII	CATG	1 cut(s)	699
CviJI	RGCY	9 cut(s)	238, 264, 505, 573, 610, 631, 635, 704, 830
CviKI_1	RGCY	9 cut(s)	238, 264, 505, 573, 610, 631, 635, 704, 830
CviQI	GTAC	2 cut(s)	357, 716
DdeI	CTNAG	3 cut(s)	101, 234, 548
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	88
Eco32I	GATATC	2 cut(s)	98, 339
Eco88I	CYCGRG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	620
EcoRV	GATATC	2 cut(s)	98, 339
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	702
FaiI	YATR	9 cut(s)	33, 258, 300, 538, 540, 695, 700, 782, 801
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	698
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	117, 654
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	117, 654
FspBI	CTAG	3 cut(s)	173, 266, 770
GluI	GCNGC	2 cut(s)	117, 654
HaeIII	GGCC	3 cut(s)	264, 704, 830
Hin1II	CATG	1 cut(s)	702
HinfI	GANTC	5 cut(s)	12, 83, 164, 246, 542
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	4 cut(s)	67, 142, 685, 760
Hpy188III	TCNNGA	5 cut(s)	158, 173, 435, 592, 674
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	3 cut(s)	129, 641, 727
HpyCH4IV	ACGT	3 cut(s)	19, 417, 747
HpyCH4V	TGCA	4 cut(s)	44, 119, 556, 836
HpyF3I	CTNAG	3 cut(s)	101, 234, 548
HpySE526I	ACGT	3 cut(s)	19, 417, 747
Hsp92II	CATG	1 cut(s)	702
Kzo9I	GATC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	103, 640
LweI	GCATC	5 cut(s)	103, 146, 268, 458, 676
MaeI	CTAG	3 cut(s)	173, 266, 770
MaeII	ACGT	3 cut(s)	19, 417, 747
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	5 cut(s)	80, 366, 417, 450, 773
MfeI	CAATTG	2 cut(s)	785, 824
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	9 cut(s)	59, 184, 199, 215, 226, 614, 785, 824, 847
MluNI	TGGCCA	1 cut(s)	830
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	730
Mox20I	TGGCCA	1 cut(s)	830
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	6 cut(s)	24, 53, 230, 285, 368, 846
MslI	CAYNNNNRTG	2 cut(s)	159, 530
Msp20I	TGGCCA	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	622
MunI	CAATTG	2 cut(s)	785, 824
MvaI	CCWGG	1 cut(s)	622
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	702
NlaIV	GGNNCC	2 cut(s)	661, 757
PaeR7I	CTCGAG	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 423
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	4 cut(s)	83, 164, 246, 542
PkrI	GCNGC	2 cut(s)	118, 655
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Ppu21I	YACGTR	2 cut(s)	20, 418
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	661, 757
PspPI	GGNCC	1 cut(s)	702
PspXI	VCTCGAGB	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	631
RsaI	GTAC	2 cut(s)	358, 717
RsaNI	GTAC	2 cut(s)	357, 716
RseI	CAYNNNNRTG	2 cut(s)	159, 530
SaqAI	TTAA	6 cut(s)	24, 53, 230, 285, 368, 846
SatI	GCNGC	2 cut(s)	117, 654
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	702
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	622
SfaNI	GCATC	5 cut(s)	103, 146, 268, 458, 676
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	159, 530
SmlI	CTYRAG	2 cut(s)	284, 444
SmoI	CTYRAG	2 cut(s)	284, 444
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	9 cut(s)	59, 184, 199, 215, 226, 614, 785, 824, 847
SspMI	CTAG	3 cut(s)	173, 266, 770
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	129, 641, 727
TaiI	ACGT	3 cut(s)	22, 420, 750
TaqI	TCGA	7 cut(s)	10, 320, 382, 426, 445, 591, 732
TasI	AATT	9 cut(s)	59, 184, 199, 215, 226, 614, 785, 824, 847
TatI	WGTACW	2 cut(s)	356, 715
TfiI	GAWTC	4 cut(s)	83, 164, 246, 542
Tru1I	TTAA	6 cut(s)	24, 53, 230, 285, 368, 846
Tru9I	TTAA	6 cut(s)	24, 53, 230, 285, 368, 846
TscAI	CASTG	4 cut(s)	115, 406, 552, 655
TseI	GCWGC	2 cut(s)	116, 653
TspDTI	ATGAA	4 cut(s)	143, 177, 555, 795
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	4 cut(s)	115, 406, 552, 655
Vha464I	CTTAAG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	3 cut(s)	199, 215, 614
XbaI	TCTAGA	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XhoI	CTCGAG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	3 cut(s)	173, 266, 770
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.