Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Reverse (-)

31477348 .. 31482242

Gene Structure 4895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1216200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGTCTTTCTCTCACCTCAGCACTCTCAGACTTTCCACCTTTCCCTCACCAGGTACCTTTTTTTTAAAAAAAAAATCTGGACATTATTTCTTGCCACAAGCAGCTTTAACAATGTCGAGATTAAATGGGGCAGCGGAGGTCAATGCTGCTGTTTTGCAGAGTTCTGAGGGTACGAAAGAAAGAATAAAGAAGATGTTCGACAAGGTTGATCTCTCGGTTTCCTCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCCCAAAGGACCCTTTTTTCCCCGAATGCGTAAACTGGTTATTGTGTAATCAACTCCATGATGGCTCATGGGGTCCTCCTAATTTGCAACCCTTGTTCACGAAAGATGCTCTCTTATCTACCTTAGCTTGCATCCTTGCACTGAAGCAGTGGAATGTTGGCGAAGAACAAATTAACAAGGGGCTACATTTTATTGAATCAAATGTAGCTTCAGCTACTGATGAAGAACAACAATCTCCTGTTGGATTTAATATATTGTTTCCTGCGATGATTGAGTATGCAAGGAATTTGAAGATGAACCTTCCCTTGGGTGCACCAACCCTAGACGCCTTATTTCACAGAAGAGACTTTGAGCTGAAAAGAGGCTATGCAAGCAACTCAGAGGGGTGGAGAACGTTGTTAGCATATATTTCAGAAGGATTTGGAAAGTCGCAGGATTGGGACCTGGTCATGAAGTATCAAAGGAAGAATGGGTCCTTGTTTAATTCACCAGCAACCACCGCCTCTGCTTTTGCTCACCTTAAGAATGCTGATTGCCTTAAGTACCTACGCTCACTCTTAGAGAAGTTTGGGAATGCAGTTCCAACGGTCTATCCTCTAGATAAATATGCCCGCCTTTCTATGGCTGCCAGTCTTGAAAATTTGGGTATTGATCGACATTTCAGGGAGGAAATTAGAAGTGTACTGGATGAAACATACAGAAGCTGGCTGCAGGGTGATGAAGATATATTATCAGATGCTGCCACCTGTGCAATGGCGTTTCGACTCTTACGTGTTAATGGATATGATGTTTCTGCAGATCCATTAACTCAATATTCAGAAGATCGTTTGTTCAATTCCCTTGGAGGGTATATGAAGGACATCGATGATGCCTTAGAGTTGTTTAGAGCTTCAGAAACCATCATACATCCAGATGAATCCGTTCTAGAGAAACAACATCACTGGACAAGTCATTTTCTGAAGCAGGAGTTATCCAATACTTTAATTCGGGGTCATAATCTGAATAAGCATATCGGCCTAGAGGTGGATGATGCTCTTAAACTTCCTCGCTATGCAATTCTGGGCCGATTGTCAACCAGAACAGCTATAAAATATTACAACACAGATAGTACAAGGATTTTAAAATCGTATTATCGTTGTTTGAATATTGGAAATGAAGATTTCCTAAAGCTGGCTGTGGATGACTTCAATAATTGCCAATCTATACACCGTGAAGAACTCAACCATCTTACTAGGTGGGTTGAGGAGTACAGATTAGACAAGCTAAACTTTGCTAGACAGAAGCAGGCATACTGTTACTTCTCTGCTGCTGCAACCCTTTTTCCTCCCGAACTATCAGATGCACGCATATCATGGGCCAAAAATGGAGTCCTTACGACTGTGGTCGATGATTTCTTTGACGTTGGAGGTTCCGAAGAGGAACTGATAAACCTCATACAATTGGTTGAGAAGTGGGATGTGAATGTGAGTGTTGATTGTTGTTCCGAGAATGTTGAAATTATATTTTCAGCACTCAAGAACACAATCAACGAGATTGGAGCCAGGGCATTCACGCGGCAAGGACGCAGTGTGACAAGTCATGTTATAGAGATTTGGTTGGATTTGATCAAGTCTATGTTCAAGGAAGCCCAGTGGTTGAAAAACAAGTCGGTTCCAACAATGGAGGAGTATATGGAAAATGCATATGTATCATTTGCCTTGGGACCGATTGTCCTTCCAGCTCTCTATTTGGTTGGGCCTAAGCTTTCAGAGGAGGCTGTAGGAAGTTCCGAATTTGATCATCTGTATCGACTCATGAGCACTGCTGGGCGCCTTCTCAATGATATCCAAGGGTTTAAGAGGGAATCTGCAGAAGGGAAGCTAAATGCTGTGTCCTTGGCCATGATTCATGGCAACGGTGTTACCGAGGAAGAGGCCATTAACGAGATGAAGAATGTAATAGTCAGCAAGAGGAGAGAATTGCTAAGATTAGTTTTGCTCGAGAAGGGTAGCGTAGTTCCGAGAGCTTGCAAAGATTTGTTTTGGAACATGAGCAAAGTGCTGCACGTGTTTTATGCTAAGCATGATGGATTCACAGCACATGATATGATGAAGACGGTAAATGCAGTAATGGAAGAACCTATCCTTCTCAGCGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

802

Amino Acids

90.71

Weight (kDa)

5.84

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	234 - 426	6.3e-39	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	504 - 740	3.8e-72	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	544 - 740	5.6e-46	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	2 cut(s)	53, 2073
AccII	CGCG	1 cut(s)	1819
AciI	CCGC	4 cut(s)	134, 765, 877, 1819
AclI	AACGTT	1 cut(s)	659
AclWI	GGATC	1 cut(s)	1058
AcoI	YGGCCR	1 cut(s)	2142
AcsI	RAATTY	4 cut(s)	262, 550, 904, 2036
AcuI	CTGAAG	4 cut(s)	428, 459, 1140, 1244
AcvI	CACGTG	1 cut(s)	2311
AcyI	GRCGYC	2 cut(s)	591, 2074
AfaI	GTAC	6 cut(s)	55, 172, 809, 948, 1375, 1514
AfiI	CCNNNNNNNGG	6 cut(s)	50, 571, 886, 1110, 1288, 1435
AflII	CTTAAG	2 cut(s)	785, 803
AflIII	ACRYGT	2 cut(s)	1036, 2310
AgsI	TTSAA	9 cut(s)	461, 556, 902, 1099, 1408, 1453, 1760, 1885, 1903
AhdI	GACNNNNNGTC	1 cut(s)	1973
AjnI	CCWGG	3 cut(s)	49, 708, 1805
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
Alw21I	GWGCWC	2 cut(s)	580, 2066
Alw26I	GTCTC	1 cut(s)	603
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	1058
AlwNI	CAGNNNCTG	3 cut(s)	482, 969, 1004
Ama87I	CYCGRG	1 cut(s)	2243
AoxI	GGCC	6 cut(s)	1279, 1327, 1620, 2000, 2142, 2178
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	9 cut(s)	101, 131, 146, 890, 973, 1004, 1571, 1574, 2305
ApoI	RAATTY	4 cut(s)	262, 550, 904, 2036
ArsI	GACNNNNNNTTYG	2 cut(s)	1617, 1649
Asp700I	GAANNNNTTC	2 cut(s)	194, 1185
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	2076
AspS9I	GGNCC	9 cut(s)	250, 274, 338, 706, 738, 1327, 1620, 1967, 2000
AsuHPI	GGTGA	5 cut(s)	5, 39, 744, 773, 992
AvaI	CYCGRG	1 cut(s)	2243
AvaII	GGWCC	6 cut(s)	250, 274, 338, 706, 738, 1967
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	2144
BanI	GGYRCC	2 cut(s)	53, 2073
BarI	GAAGNNNNNNTAC	2 cut(s)	1538, 1570
BbrPI	CACGTG	1 cut(s)	2311
BbsI	GAAGAC	1 cut(s)	2363
Bbv12I	GWGCWC	2 cut(s)	580, 2066
BbvCI	CCTCAGC	1 cut(s)	17
BbvI	GCAGC	9 cut(s)	113, 133, 143, 877, 960, 991, 1558, 1561, 2292
BccI	CCATC	4 cut(s)	320, 1172, 1497, 2324
BciT130I	CCWGG	3 cut(s)	51, 710, 1807
BclI	TGATCA	2 cut(s)	1869, 2041
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	6 cut(s)	587, 863, 1190, 1283, 1497, 1539
BfmI	CTRYAG	4 cut(s)	974, 1059, 2022, 2112
BfoI	RGCGCY	1 cut(s)	2077
BfrI	CTTAAG	2 cut(s)	785, 803
BlpI	GCTNAGC	1 cut(s)	2322
Bme1390I	CCNGG	3 cut(s)	51, 710, 1807
Bme18I	GGWCC	6 cut(s)	250, 274, 338, 706, 738, 1967
BmeRI	GACNNNNNGTC	1 cut(s)	1973
BmeT110I	CYCGRG	1 cut(s)	2243
BmgT120I	GGNCC	9 cut(s)	250, 274, 338, 706, 738, 1327, 1620, 1967, 2000
BmrFI	CCNGG	3 cut(s)	51, 710, 1807
BmrI	ACTGGG	1 cut(s)	1888
BmsI	GCATC	6 cut(s)	361, 405, 991, 1123, 1285, 1594
BmuI	ACTGGG	1 cut(s)	1888
BoxI	GACNNNNGTC	1 cut(s)	1646
BpiI	GAAGAC	1 cut(s)	2363
Bpu10I	CCTNAGC	3 cut(s)	17, 388, 2004
Bpu1102I	GCTNAGC	1 cut(s)	2322
BpuEI	CTTGAG	1 cut(s)	1763
Bsa29I	ATCGAT	1 cut(s)	1128
BsaAI	YACGTR	2 cut(s)	1037, 2311
BsaHI	GRCGYC	2 cut(s)	591, 2074
BsaJI	CCNNGG	7 cut(s)	570, 1105, 1806, 1962, 2092, 2139, 2169
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 571, 886, 1110, 1288, 1435
Bse1I	ACTGG	5 cut(s)	305, 894, 954, 1211, 1894
Bse3DI	GCAATG	2 cut(s)	252, 1023
BseBI	CCWGG	3 cut(s)	51, 710, 1807
BseCI	ATCGAT	1 cut(s)	1128
BseDI	CCNNGG	7 cut(s)	570, 1105, 1806, 1962, 2092, 2139, 2169
BseGI	GGATG	6 cut(s)	396, 958, 1171, 1297, 1450, 1726
BseLI	CCNNNNNNNGG	6 cut(s)	50, 571, 886, 1110, 1288, 1435
BseMI	GCAATG	2 cut(s)	252, 1023
BseMII	CTCAG	4 cut(s)	31, 40, 156, 657
BseNI	ACTGG	5 cut(s)	305, 894, 954, 1211, 1894
BseRI	GAGGAG	4 cut(s)	1523, 1943, 2030, 2230
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	9 cut(s)	113, 133, 143, 877, 960, 991, 1558, 1561, 2292
BseYI	CCCAGC	1 cut(s)	2069
BsgI	GTGCAG	1 cut(s)	2291
Bsh1236I	CGCG	1 cut(s)	1819
BshFI	GGCC	6 cut(s)	1281, 1329, 1622, 2002, 2144, 2180
BshNI	GGYRCC	2 cut(s)	53, 2073
BshVI	ATCGAT	1 cut(s)	1128
BsiHKAI	GWGCWC	2 cut(s)	580, 2066
BsiHKCI	CYCGRG	1 cut(s)	2243
BslFI	GGGAC	3 cut(s)	236, 719, 1980
BslI	CCNNNNNNNGG	6 cut(s)	50, 571, 886, 1110, 1288, 1435
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	3 cut(s)	236, 719, 1980
BsmI	GAATGC	4 cut(s)	296, 796, 844, 1811
BsnI	GGCC	6 cut(s)	1281, 1329, 1622, 2002, 2144, 2180
BsoBI	CYCGRG	1 cut(s)	2243
Bsp1286I	GDGCHC	2 cut(s)	580, 2066
Bsp143I	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
Bsp1720I	GCTNAGC	1 cut(s)	2322
BspACI	CCGC	4 cut(s)	134, 765, 877, 1819
BspANI	GGCC	6 cut(s)	1281, 1329, 1622, 2002, 2144, 2180
BspCNI	CTCAG	5 cut(s)	30, 39, 157, 656, 2406
BspDI	ATCGAT	1 cut(s)	1128
BspFNI	CGCG	1 cut(s)	1819
BspHI	TCATGA	2 cut(s)	714, 2058
BspMAI	CTGCAG	3 cut(s)	978, 1063, 2116
BspPI	GGATC	1 cut(s)	1058
BspT107I	GGYRCC	2 cut(s)	53, 2073
BspTI	CTTAAG	2 cut(s)	785, 803
BsrDI	GCAATG	2 cut(s)	252, 1023
BsrI	ACTGG	5 cut(s)	305, 894, 954, 1211, 1894
BssECI	CCNNGG	7 cut(s)	570, 1105, 1806, 1962, 2092, 2139, 2169
BssMI	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
BssNI	GRCGYC	2 cut(s)	591, 2074
BssT1I	CCWWGG	5 cut(s)	570, 1105, 1962, 2092, 2139
Bst2UI	CCWGG	3 cut(s)	51, 710, 1807
Bst4CI	ACNGT	7 cut(s)	853, 1475, 1559, 1645, 2162, 2362, 2403
Bst6I	CTCTTC	3 cut(s)	601, 1674, 2169
BstACI	GRCGYC	2 cut(s)	591, 2074
BstAFI	CTTAAG	2 cut(s)	785, 803
BstBAI	YACGTR	2 cut(s)	1037, 2311
BstC8I	GCNNGC	8 cut(s)	394, 637, 877, 971, 1437, 1551, 1609, 2272
BstF5I	GGATG	6 cut(s)	396, 958, 1171, 1297, 1450, 1726
BstFNI	CGCG	1 cut(s)	1819
BstH2I	RGCGCY	1 cut(s)	2077
BstHHI	GCGC	1 cut(s)	2076
BstKTI	GATC	6 cut(s)	211, 919, 1066, 1090, 1872, 2044
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 636, 764, 1013
BstNI	CCWGG	3 cut(s)	51, 710, 1807
BstPAI	GACNNNNGTC	1 cut(s)	1646
BstSCI	CCNGG	3 cut(s)	49, 708, 1805
BstSFI	CTRYAG	4 cut(s)	974, 1059, 2022, 2112
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	1819
BstV1I	GCAGC	9 cut(s)	113, 133, 143, 877, 960, 991, 1558, 1561, 2292
BstV2I	GAAGAC	1 cut(s)	2363
BstX2I	RGATCY	1 cut(s)	1063
BstYI	RGATCY	1 cut(s)	1063
Bsu15I	ATCGAT	1 cut(s)	1128
BsuRI	GGCC	6 cut(s)	1281, 1329, 1622, 2002, 2144, 2180
BsuTUI	ATCGAT	1 cut(s)	1128
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	6 cut(s)	396, 958, 1171, 1297, 1450, 1726
BtsI	GCAGTG	4 cut(s)	231, 419, 1837, 2064
BtsIMutI	CAGTG	7 cut(s)	231, 404, 419, 1204, 1837, 1901, 2064
Cac8I	GCNNGC	8 cut(s)	394, 637, 877, 971, 1437, 1551, 1609, 2272
CaiI	CAGNNNCTG	3 cut(s)	482, 969, 1004
CciI	TCATGA	2 cut(s)	714, 2058
CfoI	GCGC	1 cut(s)	2076
Cfr13I	GGNCC	9 cut(s)	250, 274, 338, 706, 738, 1327, 1620, 1967, 2000
ClaI	ATCGAT	1 cut(s)	1128
CseI	GACGC	2 cut(s)	599, 1836
CsiI	ACCWGGT	2 cut(s)	49, 708
Csp6I	GTAC	6 cut(s)	54, 171, 808, 947, 1374, 1513
CviQI	GTAC	6 cut(s)	54, 171, 808, 947, 1374, 1513
DinI	GGCGCC	1 cut(s)	2075
DpnI	GATC	6 cut(s)	210, 918, 1065, 1089, 1871, 2043
DpnII	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
DraI	TTTAAA	2 cut(s)	66, 1386
DriI	GACNNNNNGTC	1 cut(s)	1973
EaeI	YGGCCR	1 cut(s)	2142
Eam1104I	CTCTTC	3 cut(s)	601, 1674, 2169
Eam1105I	GACNNNNNGTC	1 cut(s)	1973
EarI	CTCTTC	3 cut(s)	601, 1674, 2169
Eco130I	CCWWGG	5 cut(s)	570, 1105, 1962, 2092, 2139
Eco32I	GATATC	1 cut(s)	2089
Eco47I	GGWCC	6 cut(s)	250, 274, 338, 706, 738, 1967
Eco57I	CTGAAG	4 cut(s)	428, 459, 1140, 1244
Eco72I	CACGTG	1 cut(s)	2311
Eco88I	CYCGRG	1 cut(s)	2243
EcoO109I	RGGNCCY	4 cut(s)	274, 338, 706, 738
EcoRII	CCWGG	3 cut(s)	49, 708, 1805
EcoRV	GATATC	1 cut(s)	2089
EcoT14I	CCWWGG	5 cut(s)	570, 1105, 1962, 2092, 2139
EcoT22I	ATGCAT	1 cut(s)	1948
EgeI	GGCGCC	1 cut(s)	2075
EheI	GGCGCC	1 cut(s)	2075
ErhI	CCWWGG	5 cut(s)	570, 1105, 1962, 2092, 2139
FalI	AAGNNNNNCTT	2 cut(s)	1517, 1549
FaqI	GGGAC	3 cut(s)	236, 719, 1980
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	2 cut(s)	226, 1948
FbaI	TGATCA	2 cut(s)	1869, 2041
FokI	GGATG	6 cut(s)	383, 965, 1158, 1304, 1457, 1733
FspBI	CTAG	6 cut(s)	587, 863, 1190, 1283, 1497, 1539
GlaI	GCGC	1 cut(s)	2075
GsaI	CCCAGC	1 cut(s)	2073
HaeII	RGCGCY	1 cut(s)	2077
HaeIII	GGCC	6 cut(s)	1281, 1329, 1622, 2002, 2144, 2180
HgaI	GACGC	2 cut(s)	599, 1836
HhaI	GCGC	1 cut(s)	2076
Hin1I	GRCGYC	2 cut(s)	591, 2074
Hin6I	GCGC	1 cut(s)	2074
HinP1I	GCGC	1 cut(s)	2074
HincII	GTYRAC	1 cut(s)	1338
HindII	GTYRAC	1 cut(s)	1338
HindIII	AAGCTT	1 cut(s)	2006
HinfI	GANTC	8 cut(s)	461, 1029, 1181, 1632, 2055, 2108, 2149, 2334
HphI	GGTGA	5 cut(s)	5, 39, 744, 773, 992
Hpy166II	GTNNAC	5 cut(s)	298, 363, 578, 947, 1338
Hpy8I	GTNNAC	5 cut(s)	298, 363, 578, 947, 1338
HpyAV	CCTTC	9 cut(s)	264, 575, 674, 1114, 1988, 2087, 2111, 2242, 2399
HpyCH4III	ACNGT	7 cut(s)	853, 1475, 1559, 1645, 2162, 2362, 2403
HpyCH4IV	ACGT	4 cut(s)	659, 1036, 1665, 2310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 636, 764, 1013
HpySE526I	ACGT	4 cut(s)	659, 1036, 1665, 2310
Hsp92I	GRCGYC	2 cut(s)	591, 2074
HspAI	GCGC	1 cut(s)	2074
KasI	GGCGCC	1 cut(s)	2073
KpnI	GGTACC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	1869, 2041
Kzo9I	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
LmnI	GCTCC	1 cut(s)	1802
Lsp1109I	GCAGC	9 cut(s)	113, 133, 143, 877, 960, 991, 1558, 1561, 2292
LweI	GCATC	6 cut(s)	361, 405, 991, 1123, 1285, 1594
MabI	ACCWGGT	2 cut(s)	49, 708
MaeI	CTAG	6 cut(s)	587, 863, 1190, 1283, 1497, 1539
MaeII	ACGT	4 cut(s)	659, 1036, 1665, 2310
MaeIII	GTNAC	3 cut(s)	1559, 1834, 2164
MalI	GATC	6 cut(s)	210, 918, 1065, 1089, 1871, 2043
MboI	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
MfeI	CAATTG	1 cut(s)	1703
MflI	RGATCY	1 cut(s)	1063
MhlI	GDGCHC	2 cut(s)	580, 2066
MlsI	TGGCCA	1 cut(s)	2144
MluNI	TGGCCA	1 cut(s)	2144
Mly113I	GGCGCC	1 cut(s)	2074
MlyI	GAGTC	3 cut(s)	1023, 1641, 2049
MmeI	TCCRAC	5 cut(s)	487, 872, 1648, 1842, 1943
Mox20I	TGGCCA	1 cut(s)	2144
Mph1103I	ATGCAT	1 cut(s)	1948
MroXI	GAANNNNTTC	2 cut(s)	194, 1185
MscI	TGGCCA	1 cut(s)	2144
MslI	CAYNNNNRTG	1 cut(s)	1176
Msp20I	TGGCCA	1 cut(s)	2144
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	2 cut(s)	785, 803
MspR9I	CCNGG	3 cut(s)	51, 710, 1807
MunI	CAATTG	1 cut(s)	1703
Mva1269I	GAATGC	4 cut(s)	296, 796, 844, 1811
MvaI	CCWGG	3 cut(s)	51, 710, 1807
MvnI	CGCG	1 cut(s)	1819
MwoI	GCNNNNNNNGC	4 cut(s)	242, 636, 764, 1013
NarI	GGCGCC	1 cut(s)	2074
NdeI	CATATG	2 cut(s)	226, 1948
NdeII	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
NmuCI	GTSAC	1 cut(s)	1834
NsiI	ATGCAT	1 cut(s)	1948
PaeR7I	CTCGAG	1 cut(s)	2243
PagI	TCATGA	2 cut(s)	714, 2058
PcsI	WCGNNNNNNNCGW	2 cut(s)	1033, 2166
PctI	GAATGC	4 cut(s)	296, 796, 844, 1811
PdmI	GAANNNNTTC	2 cut(s)	194, 1185
PfeI	GAWTC	5 cut(s)	461, 1181, 2108, 2149, 2334
PflFI	GACNNNGTC	1 cut(s)	710
PleI	GAGTC	3 cut(s)	1023, 1640, 2049
PluTI	GGCGCC	1 cut(s)	2077
PmaCI	CACGTG	1 cut(s)	2311
PmlI	CACGTG	1 cut(s)	2311
PpsI	GAGTC	3 cut(s)	1023, 1640, 2049
Ppu21I	YACGTR	2 cut(s)	1037, 2311
PpuMI	RGGWCCY	4 cut(s)	274, 338, 706, 738
PshAI	GACNNNNGTC	1 cut(s)	1646
Psp1406I	AACGTT	1 cut(s)	659
Psp5II	RGGWCCY	4 cut(s)	274, 338, 706, 738
Psp6I	CCWGG	3 cut(s)	49, 708, 1805
PspCI	CACGTG	1 cut(s)	2311
PspFI	CCCAGC	1 cut(s)	2069
PspGI	CCWGG	3 cut(s)	49, 708, 1805
PspPI	GGNCC	9 cut(s)	250, 274, 338, 706, 738, 1327, 1620, 1967, 2000
PspPPI	RGGWCCY	4 cut(s)	274, 338, 706, 738
PstI	CTGCAG	3 cut(s)	978, 1063, 2116
PstNI	CAGNNNCTG	3 cut(s)	482, 969, 1004
PsuI	RGATCY	1 cut(s)	1063
PsyI	GACNNNGTC	1 cut(s)	710
RsaI	GTAC	6 cut(s)	55, 172, 809, 948, 1375, 1514
RsaNI	GTAC	6 cut(s)	54, 171, 808, 947, 1374, 1513
RseI	CAYNNNNRTG	1 cut(s)	1176
Sau3AI	GATC	6 cut(s)	208, 916, 1063, 1087, 1869, 2041
Sau96I	GGNCC	9 cut(s)	250, 274, 338, 706, 738, 1327, 1620, 1967, 2000
SchI	GAGTC	3 cut(s)	1023, 1641, 2049
ScrFI	CCNGG	3 cut(s)	51, 710, 1807
SduI	GDGCHC	2 cut(s)	580, 2066
SexAI	ACCWGGT	2 cut(s)	49, 708
SfaNI	GCATC	6 cut(s)	361, 405, 991, 1123, 1285, 1594
SfcI	CTRYAG	4 cut(s)	974, 1059, 2022, 2112
SfoI	GGCGCC	1 cut(s)	2075
Sfr274I	CTCGAG	1 cut(s)	2243
SinI	GGWCC	6 cut(s)	250, 274, 338, 706, 738, 1967
SlaI	CTCGAG	1 cut(s)	2243
SmiMI	CAYNNNNRTG	1 cut(s)	1176
SmlI	CTYRAG	4 cut(s)	785, 803, 1778, 2243
SmoI	CTYRAG	4 cut(s)	785, 803, 1778, 2243
SsiI	CCGC	4 cut(s)	134, 765, 877, 1819
SspDI	GGCGCC	1 cut(s)	2073
SspI	AATATT	3 cut(s)	1079, 1358, 1411
SspMI	CTAG	6 cut(s)	587, 863, 1190, 1283, 1497, 1539
StyD4I	CCNGG	3 cut(s)	49, 708, 1805
StyI	CCWWGG	5 cut(s)	570, 1105, 1962, 2092, 2139
TaaI	ACNGT	7 cut(s)	853, 1475, 1559, 1645, 2162, 2362, 2403
TaiI	ACGT	4 cut(s)	662, 1039, 1668, 2313
TaqI	TCGA	8 cut(s)	116, 198, 919, 1027, 1128, 1650, 2053, 2244
TaqII	GACCGA	1 cut(s)	1984
TatI	WGTACW	3 cut(s)	946, 1373, 1512
TauI	GCSGC	1 cut(s)	1822
TfiI	GAWTC	5 cut(s)	461, 1181, 2108, 2149, 2334
TscAI	CASTG	7 cut(s)	238, 411, 419, 1211, 1837, 1901, 2071
TseFI	GTSAC	1 cut(s)	1834
TseI	GCWGC	9 cut(s)	101, 131, 146, 890, 973, 1004, 1571, 1574, 2305
Tsp45I	GTSAC	1 cut(s)	1834
TspGWI	ACGGA	1 cut(s)	1174
TspRI	CASTG	7 cut(s)	238, 411, 419, 1211, 1837, 1901, 2071
Tth111I	GACNNNGTC	1 cut(s)	710
Vha464I	CTTAAG	2 cut(s)	785, 803
VneI	GTGCAC	1 cut(s)	576
VpaK11BI	GGWCC	6 cut(s)	250, 274, 338, 706, 738, 1967
XapI	RAATTY	4 cut(s)	262, 550, 904, 2036
XbaI	TCTAGA	2 cut(s)	862, 1189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1015
XhoI	CTCGAG	1 cut(s)	2243
XmnI	GAANNNNTTC	2 cut(s)	194, 1185
XspI	CTAG	6 cut(s)	587, 863, 1190, 1283, 1497, 1539
Zsp2I	ATGCAT	1 cut(s)	1948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.