Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17620285 .. 17623551

Gene Structure 3267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATTGAATCTGCAATGAGTTTGAATATCAATCTTTCCCAGGGTGGATCAACCTTAAAGGCTTTATTTCACAGGAGAGACTTGAAGCTTAAAAGAGGCTATGGAAACAACTTAGAGGGGTGGAAAGCCTATATAGCATATATTTCAGAAGGAATATTGGAAAGTCACAGGATTGGAAGATGCAAGAGTGCTGGTTGTCTTGATTACCTATGCGCACTCATAGAGAAGTTTGGGAATGCAGTTCCAACAGTTTATCCTCTGGATCACTATGCTCGTCTTTCTATGGTTTCAACTCTTGATAGTTTGGGTATTGATCGACACTTCAGGGAGGAAATTAGGAGTGTACTGGATGAAACATACAGATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGATGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTGTTAATGGATATGATGTCTCTGCAGATCGGTTAAATCAATTTTCAGAAGACCATTTCTTTGGTTCCCTTGGAGGATATCTAAGGGACACTGATGCTGCATTAGAACTGTTTAGGGCATCGGAAGTCATCATACATCCAGATGAATCAGTTCTAGAGAAACAAAATTACTGGACAAGGAATTTCCTAAAACAGGAATTTTCTAATAATTTAACTCAGCCTCACAGAATCAATAAGCATATTGGCCTAGAGGTGGTTGATGCTCTTAAGTTTCCTTCCTATGCTACTTTGGGTCGGTTATCGAGCAGGAGGGCAATGATATCTTACAACACCAACAGTACAAGGATTTTAAAATCTTCTTATCGTTGTTTGAATATTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATACGTGGGTTATCGAGAGCAGATTAGACAAGCTAAAATTTGCCAGGCAGAAGCTGGCTTACTGTTATTTCACTGCTGCTGGAACCCTTTTCCCTCCTGAACTATCAGATGCTCGCATATCATGGGCCAAAAACGGAGTACTTACAACTGTGGTCGATGATTTCTTTGACGTTGGAGGTTCCAAAGAGGAACTAGTAAACCTTATACAATTGGTTGAGAAGTGGGATGTGAATCCAAGAACCGATTCTTGCTCCGAGAATGTTGAAATCGTTTTTTCAGCAATTAAGAGCTTAGTTAGTGAGATTGGCATCAATGCATTCGCAAGGCAAGAGCGCAGTGTGACAAATCACGTCATTGAGATTGTAAGAGGGAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

409

Amino Acids

46.42

Weight (kDa)

6.04

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	74 - 225	3.4e-37	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	291 - 404	4e-32	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	329 - 406	5.2e-08	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	55, 270
AcsI	RAATTY	3 cut(s)	613, 629, 887
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	3 cut(s)	345, 772, 990
AfiI	CCNNNNNNNGG	3 cut(s)	625, 685, 832
AflII	CTTAAG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	7 cut(s)	8, 25, 85, 291, 805, 850, 1115
AhlI	ACTAGT	1 cut(s)	1042
AjiI	CACGTC	1 cut(s)	1201
AjnI	CCWGG	2 cut(s)	39, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	1078, 1110
AluBI	AGCT	4 cut(s)	88, 883, 904, 1140
AluI	AGCT	4 cut(s)	88, 883, 904, 1140
Alw26I	GTCTC	2 cut(s)	72, 457
AlwI	GGATC	2 cut(s)	55, 270
AlwNI	CAGNNNCTG	3 cut(s)	366, 401, 904
AoxI	GGCC	2 cut(s)	676, 975
ApeKI	GCWGC	3 cut(s)	370, 530, 926
ApoI	RAATTY	3 cut(s)	613, 629, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	2 cut(s)	582, 1093
AspLEI	GCGC	2 cut(s)	215, 1185
AspS9I	GGNCC	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	4 cut(s)	549, 581, 893, 925
BbsI	GAAGAC	3 cut(s)	489, 825, 849
BbvI	GCAGC	3 cut(s)	357, 517, 913
BciT130I	CCWGG	2 cut(s)	41, 895
BcoDI	GTCTC	2 cut(s)	72, 457
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	3 cut(s)	587, 680, 1043
BfmI	CTRYAG	2 cut(s)	371, 456
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	3 cut(s)	371, 531, 927
BlsI	GCNGC	3 cut(s)	372, 532, 928
BmcAI	AGTACT	1 cut(s)	990
Bme1390I	CCNGG	2 cut(s)	41, 895
BmgBI	CACGTC	1 cut(s)	1201
BmgT120I	GGNCC	1 cut(s)	975
BmiI	GGNNCC	4 cut(s)	406, 499, 934, 1030
BmrFI	CCNGG	2 cut(s)	41, 895
BmsI	GCATC	8 cut(s)	170, 353, 388, 517, 560, 682, 949, 1167
BpiI	GAAGAC	3 cut(s)	489, 825, 849
BsaAI	YACGTR	2 cut(s)	434, 855
BsaBI	GATNNNNATC	2 cut(s)	1080, 1157
BsaJI	CCNNGG	3 cut(s)	39, 40, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 685, 832
Bse1I	ACTGG	3 cut(s)	351, 608, 837
Bse3DI	GCAATG	2 cut(s)	21, 753
Bse8I	GATNNNNATC	2 cut(s)	1080, 1157
BseBI	CCWGG	2 cut(s)	41, 895
BseDI	CCNNGG	3 cut(s)	39, 40, 502
BseGI	GGATG	4 cut(s)	355, 385, 568, 1081
BseJI	GATNNNNATC	2 cut(s)	1080, 1157
BseLI	CCNNNNNNNGG	3 cut(s)	625, 685, 832
BseMI	GCAATG	2 cut(s)	21, 753
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	3 cut(s)	351, 608, 837
BseXI	GCAGC	3 cut(s)	357, 517, 913
BshFI	GGCC	2 cut(s)	678, 977
BshNI	GGYRCC	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	625, 685, 832
BsmAI	GTCTC	2 cut(s)	72, 457
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	241, 1166
BsnI	GGCC	2 cut(s)	678, 977
Bsp143I	GATC	4 cut(s)	47, 262, 313, 460
BspANI	GGCC	2 cut(s)	678, 977
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	406, 499, 934, 1030
BspMAI	CTGCAG	2 cut(s)	375, 460
BspPI	GGATC	2 cut(s)	55, 270
BspT107I	GGYRCC	1 cut(s)	404
BspTI	CTTAAG	1 cut(s)	698
BsrDI	GCAATG	2 cut(s)	21, 753
BsrI	ACTGG	3 cut(s)	351, 608, 837
BssECI	CCNNGG	3 cut(s)	39, 40, 502
BssMI	GATC	4 cut(s)	47, 262, 313, 460
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	41, 895
Bst4CI	ACNGT	5 cut(s)	250, 543, 770, 914, 1000
BstAFI	CTTAAG	1 cut(s)	698
BstBAI	YACGTR	2 cut(s)	434, 855
BstC8I	GCNNGC	4 cut(s)	368, 403, 906, 964
BstDEI	CTNAG	4 cut(s)	112, 515, 648, 1141
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	4 cut(s)	355, 385, 568, 1081
BstHHI	GCGC	2 cut(s)	215, 1185
BstKTI	GATC	4 cut(s)	50, 265, 316, 463
BstMAI	GTCTC	2 cut(s)	72, 457
BstMBI	GATC	4 cut(s)	47, 262, 313, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	41, 895
BstSCI	CCNGG	2 cut(s)	39, 893
BstSFI	CTRYAG	2 cut(s)	371, 456
BstV1I	GCAGC	3 cut(s)	357, 517, 913
BstV2I	GAAGAC	3 cut(s)	489, 825, 849
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	678, 977
BtrI	CACGTC	1 cut(s)	1201
BtsCI	GGATG	4 cut(s)	355, 385, 568, 1081
BtsI	GCAGTG	3 cut(s)	843, 921, 1192
BtsIMutI	CAGTG	4 cut(s)	522, 843, 921, 1192
Cac8I	GCNNGC	4 cut(s)	368, 403, 906, 964
CaiI	CAGNNNCTG	3 cut(s)	366, 401, 904
CfoI	GCGC	2 cut(s)	215, 1185
Cfr13I	GGNCC	1 cut(s)	975
Csp6I	GTAC	3 cut(s)	344, 771, 989
CviAII	CATG	1 cut(s)	972
CviQI	GTAC	3 cut(s)	344, 771, 989
DdeI	CTNAG	4 cut(s)	112, 515, 648, 1141
DpnI	GATC	4 cut(s)	49, 264, 315, 462
DpnII	GATC	4 cut(s)	47, 262, 313, 460
DraI	TTTAAA	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	502
Eco32I	GATATC	2 cut(s)	512, 753
Eco57I	CTGAAG	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	39, 893
EcoRV	GATATC	2 cut(s)	512, 753
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	1168
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	1 cut(s)	975
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	1 cut(s)	971
Fnu4HI	GCNGC	3 cut(s)	371, 531, 927
FokI	GGATG	4 cut(s)	362, 392, 555, 1088
Fsp4HI	GCNGC	3 cut(s)	371, 531, 927
FspAI	RTGCGCAY	1 cut(s)	214
FspBI	CTAG	3 cut(s)	587, 680, 1043
FspI	TGCGCA	1 cut(s)	214
GlaI	GCGC	2 cut(s)	214, 1184
GluI	GCNGC	3 cut(s)	371, 531, 927
HaeIII	GGCC	2 cut(s)	678, 977
HhaI	GCGC	2 cut(s)	215, 1185
Hin1II	CATG	1 cut(s)	975
Hin6I	GCGC	2 cut(s)	213, 1183
HinP1I	GCGC	2 cut(s)	213, 1183
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	7 cut(s)	8, 426, 578, 660, 1081, 1094, 1222
Hpy166II	GTNNAC	2 cut(s)	344, 1048
Hpy188I	TCNGA	6 cut(s)	148, 397, 481, 556, 958, 1105
Hpy188III	TCNNGA	7 cut(s)	200, 260, 296, 572, 587, 865, 947
Hpy8I	GTNNAC	2 cut(s)	344, 1048
HpyAV	CCTTC	2 cut(s)	143, 717
HpyCH4III	ACNGT	5 cut(s)	250, 543, 770, 914, 1000
HpyCH4IV	ACGT	4 cut(s)	433, 854, 1020, 1200
HpyCH4V	TGCA	7 cut(s)	14, 183, 239, 373, 458, 533, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	4 cut(s)	112, 515, 648, 1141
HpySE526I	ACGT	4 cut(s)	433, 854, 1020, 1200
Hsp92II	CATG	1 cut(s)	975
HspAI	GCGC	2 cut(s)	213, 1183
Kzo9I	GATC	4 cut(s)	47, 262, 313, 460
LmnI	GCTCC	1 cut(s)	1106
Lsp1109I	GCAGC	3 cut(s)	357, 517, 913
LweI	GCATC	8 cut(s)	170, 353, 388, 517, 560, 682, 949, 1167
MaeI	CTAG	3 cut(s)	587, 680, 1043
MaeII	ACGT	4 cut(s)	433, 854, 1020, 1200
MaeIII	GTNAC	2 cut(s)	164, 1189
MalI	GATC	4 cut(s)	49, 264, 315, 462
MboI	GATC	4 cut(s)	47, 262, 313, 460
MboII	GAAGA	6 cut(s)	189, 395, 494, 780, 830, 854
MfeI	CAATTG	1 cut(s)	1058
MluCI	AATT	9 cut(s)	333, 473, 598, 613, 629, 640, 887, 1058, 1131
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	269, 1003
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	2 cut(s)	582, 1093
MseI	TTAA	9 cut(s)	56, 90, 438, 467, 644, 699, 782, 1134, 1228
MslI	CAYNNNNRTG	2 cut(s)	361, 573
MspCI	CTTAAG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	41, 895
MunI	CAATTG	1 cut(s)	1058
Mva1269I	GAATGC	2 cut(s)	241, 1166
MvaI	CCWGG	2 cut(s)	41, 895
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	47, 262, 313, 460
NlaIII	CATG	1 cut(s)	975
NlaIV	GGNNCC	4 cut(s)	406, 499, 934, 1030
NmuCI	GTSAC	2 cut(s)	164, 1189
NsbI	TGCGCA	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	1168
PasI	CCCWGGG	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PctI	GAATGC	2 cut(s)	241, 1166
PdmI	GAANNNNTTC	2 cut(s)	582, 1093
PfeI	GAWTC	6 cut(s)	8, 578, 660, 1081, 1094, 1222
PkrI	GCNGC	3 cut(s)	372, 532, 928
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	2 cut(s)	434, 855
Psp6I	CCWGG	2 cut(s)	39, 893
PspGI	CCWGG	2 cut(s)	39, 893
PspN4I	GGNNCC	4 cut(s)	406, 499, 934, 1030
PspPI	GGNCC	1 cut(s)	975
PstI	CTGCAG	2 cut(s)	375, 460
PstNI	CAGNNNCTG	3 cut(s)	366, 401, 904
RsaI	GTAC	3 cut(s)	345, 772, 990
RsaNI	GTAC	3 cut(s)	344, 771, 989
RseI	CAYNNNNRTG	2 cut(s)	361, 573
SaqAI	TTAA	9 cut(s)	56, 90, 438, 467, 644, 699, 782, 1134, 1228
SatI	GCNGC	3 cut(s)	371, 531, 927
Sau3AI	GATC	4 cut(s)	47, 262, 313, 460
Sau96I	GGNCC	1 cut(s)	975
ScaI	AGTACT	1 cut(s)	990
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	41, 895
SfaNI	GCATC	8 cut(s)	170, 353, 388, 517, 560, 682, 949, 1167
SfcI	CTRYAG	2 cut(s)	371, 456
SmiMI	CAYNNNNRTG	2 cut(s)	361, 573
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SpeI	ACTAGT	1 cut(s)	1042
Sse9I	AATT	9 cut(s)	333, 473, 598, 613, 629, 640, 887, 1058, 1131
SspI	AATATT	2 cut(s)	156, 808
SspMI	CTAG	3 cut(s)	587, 680, 1043
StyD4I	CCNGG	2 cut(s)	39, 893
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	5 cut(s)	250, 543, 770, 914, 1000
TaiI	ACGT	4 cut(s)	436, 857, 1023, 1203
TaqI	TCGA	5 cut(s)	316, 424, 734, 864, 1005
TasI	AATT	9 cut(s)	333, 473, 598, 613, 629, 640, 887, 1058, 1131
TatI	WGTACW	3 cut(s)	343, 770, 988
TfiI	GAWTC	6 cut(s)	8, 578, 660, 1081, 1094, 1222
Tru1I	TTAA	9 cut(s)	56, 90, 438, 467, 644, 699, 782, 1134, 1228
Tru9I	TTAA	9 cut(s)	56, 90, 438, 467, 644, 699, 782, 1134, 1228
TscAI	CASTG	4 cut(s)	529, 843, 928, 1192
TseFI	GTSAC	2 cut(s)	164, 1189
TseI	GCWGC	3 cut(s)	370, 530, 926
Tsp45I	GTSAC	2 cut(s)	164, 1189
TspDTI	ATGAA	4 cut(s)	366, 396, 591, 831
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	4 cut(s)	529, 843, 928, 1192
Vha464I	CTTAAG	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	623
XapI	RAATTY	3 cut(s)	613, 629, 887
XbaI	TCTAGA	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XmnI	GAANNNNTTC	2 cut(s)	582, 1093
XspI	CTAG	3 cut(s)	587, 680, 1043
ZrmI	AGTACT	1 cut(s)	990
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.