Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17496373 .. 17500787

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG166800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTCATGAAGTACCAAAGGAAGAATGGGTCCTTGTTTAATTCACCATCAACTACTGCTTCTGCTTTTACTCACAGCAAGAGTGCTGGTTGTCTTGATTACCTATGCGCACTCATAGAGAAGTTTGGGAATGCAGTTCCAACAGTTTATCCTCTGGATCACTATGCTCGTCTTTCTATGGTTTCAACTCTTGATAGTTTGGGTATTGATCGACACTTCAGGGAGGAAATTAGGAGTGTACTGGATGAAACATACAGATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGATGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTGTTAATGGATATGATGTCTCTGCAGATCGGTTAAATCAATTTTCAGAAGACCATTTCTTTGGTTCCCTTGGAGGATATCTAAGGGACACTGATGCTGCATTAGAACTGTTTAGGGCATCGGAAGTCATCATACATCCAGATGAATCAGTTCTAGAGAAACAAAATTACTGGACAAGGAATTTCCTAAAACAGGAATTTTCTAATAATTTAACTCAGCCTCACAGAATCAATAAGCATATTGGCCTAGAGGTGGTTGATGCTCTTAAGTTTCCTTCCTATGCTACTTTGGGTCGGTTATCGAGCAGGAGGGCAATGATATCTTACAACACCAACAGTACAAGGATTTTAAAATCTTCTTATCGTTGTTTGAATATTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATACGTGGGTTATCGAGAGCAGATTAGACAAGCTAAAATTTGCCAGGCAGAAGCTGGCTTACTGTTATTTCACTGCTGCTGGAACCCTTTTCCCTCCTGAACTATCAGATGCTCGCATATCATGGGCCAAAAACGGAGTACTTACAACTGTGGTCGATGATTTCTTTGACGTTGGAGGTTCCAAAGAGGAACTAGTAAACCTTATACAATTGGTTGAGAAGTGGGATGTGAATCCAAGAACCGATTCTTGCTCCGAGAATGTTGAAATCGTTTTTTCAGCAATTAAGAGCTTAGTTAGTGAGATTGGCATCAATGCATTCGCAAGGCAAGAGCGCAGTGTGACAAATCACGTCATTGAGATTGTAAGAGGGAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

374

Amino Acids

42.43

Weight (kDa)

5.83

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	2 - 190	5.5e-40	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	256 - 369	3.4e-32	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	294 - 371	4.5e-08	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	508, 524, 782
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	4 cut(s)	14, 240, 667, 885
AfiI	CCNNNNNNNGG	3 cut(s)	520, 580, 727
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	186, 700, 745, 1010
AhlI	ACTAGT	1 cut(s)	937
AjiI	CACGTC	1 cut(s)	1096
AjnI	CCWGG	1 cut(s)	788
AjuI	GAANNNNNNNTTGG	2 cut(s)	973, 1005
AluBI	AGCT	3 cut(s)	778, 799, 1035
AluI	AGCT	3 cut(s)	778, 799, 1035
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	165
AlwNI	CAGNNNCTG	3 cut(s)	261, 296, 799
AoxI	GGCC	2 cut(s)	571, 870
ApeKI	GCWGC	3 cut(s)	265, 425, 821
ApoI	RAATTY	3 cut(s)	508, 524, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	2 cut(s)	477, 988
AspLEI	GCGC	2 cut(s)	110, 1080
AspS9I	GGNCC	2 cut(s)	30, 870
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	299
BarI	GAAGNNNNNNTAC	4 cut(s)	444, 476, 788, 820
BbsI	GAAGAC	3 cut(s)	384, 720, 744
BbvI	GCAGC	3 cut(s)	252, 412, 808
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	3 cut(s)	482, 575, 938
BfmI	CTRYAG	2 cut(s)	266, 351
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	3 cut(s)	266, 426, 822
BlsI	GCNGC	3 cut(s)	267, 427, 823
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	1 cut(s)	790
Bme18I	GGWCC	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	1096
BmgT120I	GGNCC	2 cut(s)	30, 870
BmiI	GGNNCC	5 cut(s)	31, 301, 394, 829, 925
BmrFI	CCNGG	1 cut(s)	790
BmsI	GCATC	7 cut(s)	248, 283, 412, 455, 577, 844, 1062
BpiI	GAAGAC	3 cut(s)	384, 720, 744
BsaAI	YACGTR	2 cut(s)	329, 750
BsaBI	GATNNNNATC	2 cut(s)	975, 1052
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 580, 727
Bse1I	ACTGG	3 cut(s)	246, 503, 732
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	2 cut(s)	975, 1052
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	4 cut(s)	250, 280, 463, 976
BseJI	GATNNNNATC	2 cut(s)	975, 1052
BseLI	CCNNNNNNNGG	3 cut(s)	520, 580, 727
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	3 cut(s)	246, 503, 732
BseXI	GCAGC	3 cut(s)	252, 412, 808
BshFI	GGCC	2 cut(s)	573, 872
BshNI	GGYRCC	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	520, 580, 727
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	136, 1061
BsnI	GGCC	2 cut(s)	573, 872
Bsp143I	GATC	3 cut(s)	157, 208, 355
BspANI	GGCC	2 cut(s)	573, 872
BspCNI	CTCAG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	5 cut(s)	31, 301, 394, 829, 925
BspMAI	CTGCAG	2 cut(s)	270, 355
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	246, 503, 732
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	157, 208, 355
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	5 cut(s)	145, 438, 665, 809, 895
BstAFI	CTTAAG	1 cut(s)	593
BstBAI	YACGTR	2 cut(s)	329, 750
BstC8I	GCNNGC	4 cut(s)	263, 298, 801, 859
BstDEI	CTNAG	3 cut(s)	410, 543, 1036
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	250, 280, 463, 976
BstHHI	GCGC	2 cut(s)	110, 1080
BstKTI	GATC	3 cut(s)	160, 211, 358
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	157, 208, 355
BstNI	CCWGG	1 cut(s)	790
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	2 cut(s)	266, 351
BstV1I	GCAGC	3 cut(s)	252, 412, 808
BstV2I	GAAGAC	3 cut(s)	384, 720, 744
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	573, 872
BtrI	CACGTC	1 cut(s)	1096
BtsCI	GGATG	4 cut(s)	250, 280, 463, 976
BtsI	GCAGTG	3 cut(s)	738, 816, 1087
BtsIMutI	CAGTG	4 cut(s)	417, 738, 816, 1087
Cac8I	GCNNGC	4 cut(s)	263, 298, 801, 859
CaiI	CAGNNNCTG	3 cut(s)	261, 296, 799
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	2 cut(s)	110, 1080
Cfr13I	GGNCC	2 cut(s)	30, 870
Csp6I	GTAC	4 cut(s)	13, 239, 666, 884
CviAII	CATG	2 cut(s)	7, 867
CviJI	RGCY	8 cut(s)	265, 547, 573, 778, 799, 803, 872, 1035
CviKI_1	RGCY	8 cut(s)	265, 547, 573, 778, 799, 803, 872, 1035
CviQI	GTAC	4 cut(s)	13, 239, 666, 884
DdeI	CTNAG	3 cut(s)	410, 543, 1036
DpnI	GATC	3 cut(s)	159, 210, 357
DpnII	GATC	3 cut(s)	157, 208, 355
DraI	TTTAAA	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	397
Eco32I	GATATC	2 cut(s)	407, 648
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	788
EcoRV	GATATC	2 cut(s)	407, 648
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	10, 870
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	6, 866
Fnu4HI	GCNGC	3 cut(s)	266, 426, 822
FokI	GGATG	4 cut(s)	257, 287, 450, 983
Fsp4HI	GCNGC	3 cut(s)	266, 426, 822
FspAI	RTGCGCAY	1 cut(s)	109
FspBI	CTAG	3 cut(s)	482, 575, 938
FspI	TGCGCA	1 cut(s)	109
GlaI	GCGC	2 cut(s)	109, 1079
GluI	GCNGC	3 cut(s)	266, 426, 822
HaeIII	GGCC	2 cut(s)	573, 872
HhaI	GCGC	2 cut(s)	110, 1080
Hin1II	CATG	2 cut(s)	10, 870
Hin6I	GCGC	2 cut(s)	108, 1078
HinP1I	GCGC	2 cut(s)	108, 1078
HinfI	GANTC	6 cut(s)	321, 473, 555, 976, 989, 1117
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	239, 943
Hpy188I	TCNGA	5 cut(s)	292, 376, 451, 853, 1000
Hpy188III	TCNNGA	8 cut(s)	7, 95, 155, 191, 467, 482, 760, 842
Hpy8I	GTNNAC	2 cut(s)	239, 943
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	5 cut(s)	145, 438, 665, 809, 895
HpyCH4IV	ACGT	4 cut(s)	328, 749, 915, 1095
HpyCH4V	TGCA	5 cut(s)	134, 268, 353, 428, 1061
HpyF3I	CTNAG	3 cut(s)	410, 543, 1036
HpySE526I	ACGT	4 cut(s)	328, 749, 915, 1095
Hsp92II	CATG	2 cut(s)	10, 870
HspAI	GCGC	2 cut(s)	108, 1078
Kzo9I	GATC	3 cut(s)	157, 208, 355
LmnI	GCTCC	1 cut(s)	1001
Lsp1109I	GCAGC	3 cut(s)	252, 412, 808
LweI	GCATC	7 cut(s)	248, 283, 412, 455, 577, 844, 1062
MaeI	CTAG	3 cut(s)	482, 575, 938
MaeII	ACGT	4 cut(s)	328, 749, 915, 1095
MaeIII	GTNAC	1 cut(s)	1084
MalI	GATC	3 cut(s)	159, 210, 357
MboI	GATC	3 cut(s)	157, 208, 355
MboII	GAAGA	6 cut(s)	34, 290, 389, 675, 725, 749
MfeI	CAATTG	1 cut(s)	953
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	2 cut(s)	164, 898
Mph1103I	ATGCAT	1 cut(s)	1063
MroXI	GAANNNNTTC	2 cut(s)	477, 988
MseI	TTAA	8 cut(s)	39, 333, 362, 539, 594, 677, 1029, 1123
MslI	CAYNNNNRTG	2 cut(s)	256, 468
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	790
MunI	CAATTG	1 cut(s)	953
Mva1269I	GAATGC	2 cut(s)	136, 1061
MvaI	CCWGG	1 cut(s)	790
NdeII	GATC	3 cut(s)	157, 208, 355
NlaIII	CATG	2 cut(s)	10, 870
NlaIV	GGNNCC	5 cut(s)	31, 301, 394, 829, 925
NmuCI	GTSAC	1 cut(s)	1084
NsbI	TGCGCA	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	1063
PagI	TCATGA	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	2 cut(s)	136, 1061
PdmI	GAANNNNTTC	2 cut(s)	477, 988
PfeI	GAWTC	5 cut(s)	473, 555, 976, 989, 1117
PkrI	GCNGC	3 cut(s)	267, 427, 823
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Ppu21I	YACGTR	2 cut(s)	329, 750
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	5 cut(s)	31, 301, 394, 829, 925
PspPI	GGNCC	2 cut(s)	30, 870
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	270, 355
PstNI	CAGNNNCTG	3 cut(s)	261, 296, 799
RsaI	GTAC	4 cut(s)	14, 240, 667, 885
RsaNI	GTAC	4 cut(s)	13, 239, 666, 884
RseI	CAYNNNNRTG	2 cut(s)	256, 468
SaqAI	TTAA	8 cut(s)	39, 333, 362, 539, 594, 677, 1029, 1123
SatI	GCNGC	3 cut(s)	266, 426, 822
Sau3AI	GATC	3 cut(s)	157, 208, 355
Sau96I	GGNCC	2 cut(s)	30, 870
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	790
SfaNI	GCATC	7 cut(s)	248, 283, 412, 455, 577, 844, 1062
SfcI	CTRYAG	2 cut(s)	266, 351
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	256, 468
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SpeI	ACTAGT	1 cut(s)	937
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	3 cut(s)	482, 575, 938
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	5 cut(s)	145, 438, 665, 809, 895
TaiI	ACGT	4 cut(s)	331, 752, 918, 1098
TaqI	TCGA	5 cut(s)	211, 319, 629, 759, 900
TatI	WGTACW	3 cut(s)	238, 665, 883
TfiI	GAWTC	5 cut(s)	473, 555, 976, 989, 1117
Tru1I	TTAA	8 cut(s)	39, 333, 362, 539, 594, 677, 1029, 1123
Tru9I	TTAA	8 cut(s)	39, 333, 362, 539, 594, 677, 1029, 1123
TscAI	CASTG	4 cut(s)	424, 738, 823, 1087
TseFI	GTSAC	1 cut(s)	1084
TseI	GCWGC	3 cut(s)	265, 425, 821
Tsp45I	GTSAC	1 cut(s)	1084
TspDTI	ATGAA	5 cut(s)	23, 261, 291, 486, 726
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	4 cut(s)	424, 738, 823, 1087
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	3 cut(s)	508, 524, 782
XbaI	TCTAGA	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 796
XmnI	GAANNNNTTC	2 cut(s)	477, 988
XspI	CTAG	3 cut(s)	482, 575, 938
ZrmI	AGTACT	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.