Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17878255 .. 17878635

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTACTTTGTAAAGAACTCGCGACTATATTTCAGAGGGAAGCTGCGGAAGGGAAGCTAAATGCTGTAACATTGGCCATGATTCATGGTAATGGTAGTGTTAGCGAAGAAGAGGCCATCAATGAGATGAAGAGCATTATCACCAGTAAGAGGAGAGAACTGCAAAGACTAGTTTTGCAGGACAAGGATAGTGTAGTTCCAAGAGCTTGCAAGGATCTTTTTTGGAACATCGGCAATATTTTGCATCTATTTTATGAAAGGCACGATGGATACGCTGCGCATGACATGATGAAAACTGTAAATGAAGTAACAGAAGAACCCATCATTCTCAATGCAAAGCAAGCAAGTGAATGGCATGTACAGCTAGTTACAAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

126

Amino Acids

14.38

Weight (kDa)

5.94

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	150
AhlI	ACTAGT	1 cut(s)	169
AluBI	AGCT	4 cut(s)	44, 58, 206, 364
AluI	AGCT	4 cut(s)	44, 58, 206, 364
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	75, 114
ApeKI	GCWGC	2 cut(s)	44, 275
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	31, 262
BccI	CCATC	3 cut(s)	125, 260, 329
BciVI	GTATCC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	3 cut(s)	170, 365, 379
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	45, 276
BlsI	GCNGC	2 cut(s)	46, 277
BmsI	GCATC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	31, 262
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	77, 116
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	2 cut(s)	77, 116
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	214
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	77, 116
BspFNI	CGCG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	105, 125
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	208, 342
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 361
BstNSI	RCATGY	1 cut(s)	359
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	31, 262
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	77, 116
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	208, 342
CfoI	GCGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	5 cut(s)	79, 86, 281, 286, 356
CviJI	RGCY	6 cut(s)	44, 58, 77, 116, 206, 364
CviKI_1	RGCY	6 cut(s)	44, 58, 77, 116, 206, 364
CviQI	GTAC	1 cut(s)	359
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	105, 125
EarI	CTCTTC	2 cut(s)	105, 125
FaeI	CATG	5 cut(s)	82, 89, 284, 289, 359
FaiI	YATR	7 cut(s)	29, 80, 87, 255, 282, 287, 357
FatI	CATG	5 cut(s)	78, 85, 280, 285, 355
Fnu4HI	GCNGC	2 cut(s)	45, 276
Fsp4HI	GCNGC	2 cut(s)	45, 276
FspBI	CTAG	3 cut(s)	170, 365, 379
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	45, 276
HaeIII	GGCC	2 cut(s)	77, 116
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	82, 89, 284, 289, 359
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	163, 178, 210, 244, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 361
Hsp92II	CATG	5 cut(s)	82, 89, 284, 289, 359
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	125
LpnPI	CCDG	2 cut(s)	157, 164
Lsp1109I	GCAGC	2 cut(s)	31, 262
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	170, 365, 379
MaeIII	GTNAC	3 cut(s)	67, 307, 367
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	119, 122, 142, 326
MflI	RGATCY	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	3 cut(s)	30, 106, 144
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	77
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	341, 361
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	82, 89, 284, 289, 359
NruI	TCGCGA	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	279
NspI	RCATGY	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	46, 277
PsuI	RGATCY	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	45, 276
Sau3AI	GATC	1 cut(s)	214
SetI	ASST	4 cut(s)	46, 60, 208, 366
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	90
SpeI	ACTAGT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	3 cut(s)	170, 365, 379
TaaI	ACNGT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	44, 275
TspDTI	ATGAA	5 cut(s)	74, 143, 270, 305, 318
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	3 cut(s)	170, 365, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.