MD10G1215900.v1.1

Belongs to the terpene synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
31415197 .. 31417382
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1215900.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGCTCCCAAACAACTTTGAGTGGAGTCGTTCGAAAAGAAGTTTCTATAGCCCCCTTGCTCATTTAACACTGCATCCGGGTGCCGATGGAGATACAGCGACCCTTGCTCACTTATCACTGTGCTTGGGCCACACAGCGCGCCACTTACGGGTGGATGATGCTCTTAAAATTCCTCGTTACGCAATTTTGGGTCGGTTGTCAACCAGGACAGCTATAAAATATTACAACACAGACAGTACAAGGATTTTAAAATCTTATTATCGTTGTTTGAATATTGGAAATGAAGATTTCCTAAAGCTGGCTGTGGATGACTTCAATAATTGCCAATCTATACACCGTGAAGAACTCAACCATTTTACTAGGTGGGTTGAGGAGTACAGATTAGACAAGCTAAAATTTGCTAGGCAGAAGCAGGCATACTCTTACTTCTCGGCTGCTGCAACCCTTTTTCCTCCCGAACTATCAGATGCACGCATATCATGGGCCAAAAATGGCGTCCTTGCGACTGTGGTCGATGATTTCTTTGACGTTGGAGGTTCCGAAAAGGAACTGATAAACCTCATACAATTGGTTGAGAAGTGGGATGTGAATGTGAGTGTTGATTGTTGTTCCGAGAATGTTGAAATTATATTTTCAGCACTCAAGAACACAATCAACGAGATTGGAGCCAGGGCATTCACGCGGCAAGGACGCAGTGTGACAAGTCATGTGATAGAGATTTGGTTGGATTTGATCAAGTCTATGTTCAAGGAAGCCGAGTGGTTGAGAAACAAGTCAGTTCCAACAATGGAGGAGTATATGGAAAATGCATACGTATCAATTGGCTTGGGACCAATTGTCCTTCCTGCTCTCTATTTGGTTGGGCCTAAGCTTTCAGAGGAGGCTGTTGGCAGTTCCGAATTCCATCATCTGTATCGACTTATGAGCACTGCTGGGCGCCTTCTCAATGATATCCAAGGGTTTAAGAGAGAATCTGCAGAAAGGAAGCTAAATGCTGTGTCCTTGGCCATGATTCATGGCAGCGGTGTTACTGAGGAAGAGGCCATTAGCGAGATGAAGAATGTAATAGTCAGTAAGAGAAGAGAATTGCTAAGATTAGTTTTGCTTGAGAAGGGTAGCGTAGTTCCGAGAGCTTGCAAAGATTTGTTTTGGAACATGAGCAAAGTGCTGCACCTGTTTTACGCTAAGCATGATGGATTCACAGCACATGATATGATGAAGACGGCATACGCAGTAATAGAAGAACCCATCCTTCTCAGTGAACTGTAA

Protein Analysis

423

Amino Acids

48.01

Weight (kDa)

6.72

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 125 - 361 3.1e-71 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 165 - 361 1.4e-45 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 80, 936
AccII CGCG 2 cut(s) 139, 682
AciI CCGC 2 cut(s) 682, 1023
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 3 cut(s) 168, 395, 899
AcyI GRCGYC 2 cut(s) 495, 937
AfaI GTAC 2 cut(s) 238, 377
AfiI CCNNNNNNNGG 2 cut(s) 148, 298
AgsI TTSAA 4 cut(s) 271, 316, 623, 748
AhdI GACNNNNNGTC 1 cut(s) 836
AjnI CCWGG 2 cut(s) 203, 668
AluBI AGCT 6 cut(s) 212, 298, 391, 871, 988, 1133
AluI AGCT 6 cut(s) 212, 298, 391, 871, 988, 1133
Alw21I GWGCWC 1 cut(s) 929
AoxI GGCC 5 cut(s) 127, 483, 863, 1005, 1041
ApeKI GCWGC 4 cut(s) 434, 437, 1020, 1168
ApoI RAATTY 3 cut(s) 168, 395, 899
ArsI GACNNNNNNTTYG 2 cut(s) 480, 512
AspLEI GCGC 3 cut(s) 139, 141, 939
AspS9I GGNCC 4 cut(s) 127, 483, 830, 863
AsuC2I CCSGG 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 830
BalI TGGCCA 1 cut(s) 1007
BanI GGYRCC 2 cut(s) 80, 936
BarI GAAGNNNNNNTAC 4 cut(s) 401, 433, 1211, 1243
BbsI GAAGAC 1 cut(s) 1226
Bbv12I GWGCWC 1 cut(s) 929
BbvI GCAGC 4 cut(s) 421, 424, 1032, 1155
BccI CCATC 4 cut(s) 80, 912, 1187, 1256
BceAI ACGGC 1 cut(s) 1239
BciT130I CCWGG 2 cut(s) 205, 670
BclI TGATCA 1 cut(s) 732
BcnI CCSGG 1 cut(s) 78
BfaI CTAG 2 cut(s) 360, 402
BfmI CTRYAG 2 cut(s) 46, 975
BfoI RGCGCY 1 cut(s) 940
BisI GCNGC 5 cut(s) 435, 438, 683, 1021, 1169
BlpI GCTNAGC 1 cut(s) 1185
BlsI GCNGC 5 cut(s) 436, 439, 684, 1022, 1170
Bme1390I CCNGG 3 cut(s) 78, 205, 670
Bme18I GGWCC 1 cut(s) 830
BmeRI GACNNNNNGTC 1 cut(s) 836
BmgT120I GGNCC 4 cut(s) 127, 483, 830, 863
BmiI GGNNCC 5 cut(s) 82, 538, 667, 831, 938
BmrFI CCNGG 3 cut(s) 78, 205, 670
BmsI GCATC 3 cut(s) 82, 148, 457
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 1226
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 1185
Bpu14I TTCGAA 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 626, 1127
BpuMI CCSGG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 814
BsaHI GRCGYC 2 cut(s) 495, 937
BsaJI CCNNGG 3 cut(s) 669, 955, 1002
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 298
BseBI CCWGG 2 cut(s) 205, 670
BseDI CCNNGG 3 cut(s) 669, 955, 1002
BseGI GGATG 5 cut(s) 73, 160, 313, 589, 1248
BseLI CCNNNNNNNGG 2 cut(s) 148, 298
BseMII CTCAG 1 cut(s) 1023
BsePI GCGCGC 1 cut(s) 137
BseRI GAGGAG 3 cut(s) 386, 806, 893
BseXI GCAGC 4 cut(s) 421, 424, 1032, 1155
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 1 cut(s) 1154
Bsh1236I CGCG 2 cut(s) 139, 682
BshFI GGCC 5 cut(s) 129, 485, 865, 1007, 1043
BshNI GGYRCC 2 cut(s) 80, 936
BsiHKAI GWGCWC 1 cut(s) 929
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 2 cut(s) 148, 298
BsmFI GGGAC 1 cut(s) 843
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 5 cut(s) 129, 485, 865, 1007, 1043
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 929
Bsp143I GATC 1 cut(s) 732
Bsp1720I GCTNAGC 1 cut(s) 1185
BspACI CCGC 2 cut(s) 682, 1023
BspANI GGCC 5 cut(s) 129, 485, 865, 1007, 1043
BspCNI CTCAG 2 cut(s) 1024, 1269
BspFNI CGCG 2 cut(s) 139, 682
BspLI GGNNCC 5 cut(s) 82, 538, 667, 831, 938
BspMAI CTGCAG 1 cut(s) 979
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 2 cut(s) 80, 936
BssECI CCNNGG 3 cut(s) 669, 955, 1002
BssHII GCGCGC 1 cut(s) 137
BssMI GATC 1 cut(s) 732
BssNI GRCGYC 2 cut(s) 495, 937
BssT1I CCWWGG 2 cut(s) 955, 1002
Bst2UI CCWGG 2 cut(s) 205, 670
Bst4CI ACNGT 5 cut(s) 120, 236, 338, 508, 1266
Bst6I CTCTTC 2 cut(s) 1032, 1075
BstACI GRCGYC 2 cut(s) 495, 937
BstBAI YACGTR 1 cut(s) 814
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 5 cut(s) 139, 300, 414, 472, 1135
BstDEI CTNAG 5 cut(s) 867, 1032, 1091, 1185, 1256
BstF5I GGATG 5 cut(s) 73, 160, 313, 589, 1248
BstFNI CGCG 2 cut(s) 139, 682
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 3 cut(s) 139, 141, 939
BstKTI GATC 1 cut(s) 735
BstMBI GATC 1 cut(s) 732
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 2 cut(s) 205, 670
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 3 cut(s) 76, 203, 668
BstSFI CTRYAG 2 cut(s) 46, 975
BstSNI TACGTA 1 cut(s) 814
BstUI CGCG 2 cut(s) 139, 682
BstV1I GCAGC 4 cut(s) 421, 424, 1032, 1155
BstV2I GAAGAC 1 cut(s) 1226
BsuRI GGCC 5 cut(s) 129, 485, 865, 1007, 1043
BtsCI GGATG 5 cut(s) 73, 160, 313, 589, 1248
BtsI GCAGTG 3 cut(s) 68, 700, 927
BtsIMutI CAGTG 5 cut(s) 68, 116, 700, 927, 1264
Cac8I GCNNGC 5 cut(s) 139, 300, 414, 472, 1135
CfoI GCGC 3 cut(s) 139, 141, 939
Cfr13I GGNCC 4 cut(s) 127, 483, 830, 863
CseI GACGC 2 cut(s) 484, 699
Csp6I GTAC 2 cut(s) 237, 376
CviAII CATG 7 cut(s) 480, 707, 1009, 1016, 1156, 1190, 1208
CviQI GTAC 2 cut(s) 237, 376
DdeI CTNAG 5 cut(s) 867, 1032, 1091, 1185, 1256
DinI GGCGCC 1 cut(s) 938
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
DraI TTTAAA 1 cut(s) 249
DriI GACNNNNNGTC 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 1005
Eam1104I CTCTTC 2 cut(s) 1032, 1075
Eam1105I GACNNNNNGTC 1 cut(s) 836
EarI CTCTTC 2 cut(s) 1032, 1075
Eco105I TACGTA 1 cut(s) 814
Eco130I CCWWGG 2 cut(s) 955, 1002
Eco32I GATATC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 899
EcoRII CCWGG 2 cut(s) 203, 668
EcoRV GATATC 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 955, 1002
EcoT22I ATGCAT 1 cut(s) 811
EgeI GGCGCC 1 cut(s) 938
EheI GGCGCC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 955, 1002
FaeI CATG 7 cut(s) 483, 710, 1012, 1019, 1159, 1193, 1211
FaqI GGGAC 1 cut(s) 843
FatI CATG 7 cut(s) 479, 706, 1008, 1015, 1155, 1189, 1207
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 435, 438, 683, 1021, 1169
FokI GGATG 5 cut(s) 60, 167, 320, 596, 1235
Fsp4HI GCNGC 5 cut(s) 435, 438, 683, 1021, 1169
FspBI CTAG 2 cut(s) 360, 402
GlaI GCGC 3 cut(s) 138, 140, 938
GluI GCNGC 5 cut(s) 435, 438, 683, 1021, 1169
GsaI CCCAGC 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 5 cut(s) 129, 485, 865, 1007, 1043
HapII CCGG 1 cut(s) 77
HgaI GACGC 2 cut(s) 484, 699
HhaI GCGC 3 cut(s) 139, 141, 939
Hin1I GRCGYC 2 cut(s) 495, 937
Hin1II CATG 7 cut(s) 483, 710, 1012, 1019, 1159, 1193, 1211
Hin6I GCGC 3 cut(s) 137, 139, 937
HinP1I GCGC 3 cut(s) 137, 139, 937
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 4 cut(s) 25, 971, 1012, 1197
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 201, 1262
Hpy188I TCNGA 6 cut(s) 466, 541, 613, 877, 898, 1128
Hpy188III TCNNGA 2 cut(s) 455, 643
Hpy8I GTNNAC 2 cut(s) 201, 1262
HpyAV CCTTC 4 cut(s) 851, 950, 1105, 1262
HpyCH4III ACNGT 5 cut(s) 120, 236, 338, 508, 1266
HpyCH4IV ACGT 2 cut(s) 528, 813
HpyCH4V TGCA 7 cut(s) 73, 440, 470, 809, 977, 1137, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 5 cut(s) 867, 1032, 1091, 1185, 1256
HpySE526I ACGT 2 cut(s) 528, 813
Hsp92I GRCGYC 2 cut(s) 495, 937
Hsp92II CATG 7 cut(s) 483, 710, 1012, 1019, 1159, 1193, 1211
HspAI GCGC 3 cut(s) 137, 139, 937
KasI GGCGCC 1 cut(s) 936
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 2 cut(s) 9, 665
Lsp1109I GCAGC 4 cut(s) 421, 424, 1032, 1155
LweI GCATC 3 cut(s) 82, 148, 457
MaeI CTAG 2 cut(s) 360, 402
MaeII ACGT 2 cut(s) 528, 813
MaeIII GTNAC 3 cut(s) 176, 697, 1027
MalI GATC 1 cut(s) 734
MboI GATC 1 cut(s) 732
MboII GAAGA 7 cut(s) 296, 353, 1049, 1069, 1092, 1231, 1253
MfeI CAATTG 3 cut(s) 566, 819, 834
MhlI GDGCHC 1 cut(s) 929
MlsI TGGCCA 1 cut(s) 1007
MluNI TGGCCA 1 cut(s) 1007
Mly113I GGCGCC 1 cut(s) 937
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 3 cut(s) 511, 705, 806
Mox20I TGGCCA 1 cut(s) 1007
Mph1103I ATGCAT 1 cut(s) 811
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 4 cut(s) 65, 165, 248, 963
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 1023
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 3 cut(s) 78, 205, 670
MunI CAATTG 3 cut(s) 566, 819, 834
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 2 cut(s) 205, 670
MvnI CGCG 2 cut(s) 139, 682
MwoI GCNNNNNNNGC 1 cut(s) 104
NarI GGCGCC 1 cut(s) 937
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 732
NlaIII CATG 7 cut(s) 483, 710, 1012, 1019, 1159, 1193, 1211
NlaIV GGNNCC 5 cut(s) 82, 538, 667, 831, 938
NmeAIII GCCGAG 2 cut(s) 410, 781
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 811
NspV TTCGAA 1 cut(s) 32
PauI GCGCGC 1 cut(s) 137
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 971, 1012, 1197
PkrI GCNGC 5 cut(s) 436, 439, 684, 1022, 1170
PleI GAGTC 1 cut(s) 33
PluTI GGCGCC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 814
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 203, 668
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 2 cut(s) 203, 668
PspN4I GGNNCC 5 cut(s) 82, 538, 667, 831, 938
PspPI GGNCC 4 cut(s) 127, 483, 830, 863
PstI CTGCAG 1 cut(s) 979
PteI GCGCGC 1 cut(s) 137
RsaI GTAC 2 cut(s) 238, 377
RsaNI GTAC 2 cut(s) 237, 376
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 4 cut(s) 65, 165, 248, 963
SatI GCNGC 5 cut(s) 435, 438, 683, 1021, 1169
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 4 cut(s) 127, 483, 830, 863
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 78, 205, 670
SduI GDGCHC 1 cut(s) 929
SfaNI GCATC 3 cut(s) 82, 148, 457
SfcI CTRYAG 2 cut(s) 46, 975
SfoI GGCGCC 1 cut(s) 938
SfuI TTCGAA 1 cut(s) 32
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 641, 1106
SmoI CTYRAG 2 cut(s) 641, 1106
SnaBI TACGTA 1 cut(s) 814
SsiI CCGC 2 cut(s) 682, 1023
SspDI GGCGCC 1 cut(s) 936
SspI AATATT 2 cut(s) 221, 274
SspMI CTAG 2 cut(s) 360, 402
StyD4I CCNGG 3 cut(s) 76, 203, 668
StyI CCWWGG 2 cut(s) 955, 1002
TaaI ACNGT 5 cut(s) 120, 236, 338, 508, 1266
TaiI ACGT 2 cut(s) 531, 816
TaqI TCGA 3 cut(s) 32, 513, 916
TatI WGTACW 2 cut(s) 236, 375
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 3 cut(s) 971, 1012, 1197
Tru1I TTAA 4 cut(s) 65, 165, 248, 963
Tru9I TTAA 4 cut(s) 65, 165, 248, 963
TscAI CASTG 5 cut(s) 75, 123, 700, 934, 1264
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 4 cut(s) 434, 437, 1020, 1168
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 4 cut(s) 297, 1004, 1070, 1232
TspRI CASTG 5 cut(s) 75, 123, 700, 934, 1264
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 3 cut(s) 168, 395, 899
XspI CTAG 2 cut(s) 360, 402
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.