Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

10252975 .. 10253674

Gene Structure 700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTTTTTGGACAGCAGCAACTGTCTTACTGAGCATCTGAAAGTGCTCCAATGGTTGGATTCGCTCAATGCTATGCTGAAGGAAGCTAAGTGGTCGATGAACAAGTCGGAGTCAACAATGGAGGAATACATGGAAAATGCGTACGTCTCATTTGCGATGGGACCTATTGTCCTTTCAGCTCTCTATTTGGTCGGGCCTAAGCTCTCAGAGGATGCTCGGGAAGCTGCAGAAGGGAAGATAAATTCTGTAACATTGGCCATGATTTATGGCAATGGTTCTATTAGAGAAGAAGAGGTCATCGATGAGATGAAGCGGATCATCACCAGTAAGAGGAGAGAACTACAAAGACTAGTTTTGCAGGAAAAGGATAGTGTAATTCCCAGATGTTGCGCCTATCTTATGAAAGTCATGATGGATACACCGCGGACGACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

146

Amino Acids

16.56

Weight (kDa)

5.3

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	11 - 87	8.1e-13	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	17 - 74	2.6e-10	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccII	CGCG	1 cut(s)	424
AciI	CCGC	3 cut(s)	313, 422, 424
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	55, 330
AhdI	GACNNNNNGTC	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	4 cut(s)	86, 179, 202, 224
AluI	AGCT	4 cut(s)	86, 179, 202, 224
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	194, 255
ApeKI	GCWGC	2 cut(s)	15, 224
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	161, 194
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	27, 211
BccI	CCATC	2 cut(s)	151, 406
BciVI	GTATCC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	2 cut(s)	16, 225
BlsI	GCNGC	2 cut(s)	17, 226
Bme18I	GGWCC	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	161, 194
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	2 cut(s)	43, 202
Bpu10I	CCTNAGC	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 330
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	55, 330
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	21, 219
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	27, 211
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	196, 257
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	216
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	55, 330
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	196, 257
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	313, 422, 424
BspANI	GGCC	2 cut(s)	196, 257
BspCNI	CTCAG	2 cut(s)	22, 218
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	30, 87, 198, 205
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	27, 211
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	196, 257
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	21
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	161, 194
Cfr42I	CCGCGG	1 cut(s)	425
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	3 cut(s)	130, 259, 409
CviJI	RGCY	6 cut(s)	86, 179, 196, 202, 224, 257
CviKI_1	RGCY	6 cut(s)	86, 179, 196, 202, 224, 257
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	4 cut(s)	30, 87, 198, 205
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	3 cut(s)	133, 262, 412
FaiI	YATR	7 cut(s)	74, 131, 260, 267, 401, 410, 436
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	129, 258, 408
Fnu4HI	GCNGC	2 cut(s)	16, 225
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	16, 225
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	2 cut(s)	16, 225
HaeIII	GGCC	2 cut(s)	196, 257
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	133, 262, 412
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	59, 110
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	39, 109, 208
Hpy188III	TCNNGA	2 cut(s)	218, 409
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	73, 224
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	227, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	30, 87, 198, 205
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	133, 262, 412
HspAI	GCGC	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	337, 344, 394
Lsp1109I	GCAGC	2 cut(s)	27, 211
LweI	GCATC	2 cut(s)	43, 202
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	247, 299, 302
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	241, 375
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	36, 87
MnlI	CCTC	4 cut(s)	115, 202, 286, 324
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	133, 262, 412
NlaIV	GGNNCC	1 cut(s)	162
PagI	TCATGA	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	59
Pfl23II	CGTACG	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	17, 226
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	161, 194
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacII	CCGCGG	1 cut(s)	425
SatI	GCNGC	2 cut(s)	16, 225
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	161, 194
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	88, 147, 166, 181, 204, 226, 297
SfaNI	GCATC	2 cut(s)	43, 202
SfcI	CTRYAG	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	425
SgrBI	CCGCGG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	2 cut(s)	241, 375
SsiI	CCGC	3 cut(s)	313, 422, 424
SspMI	CTAG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	95, 300
TasI	AATT	2 cut(s)	241, 375
TfiI	GAWTC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	15, 224
TspDTI	ATGAA	3 cut(s)	113, 323, 416
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.