Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17711556 .. 17716103

Gene Structure 4548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGCTGCTGCTGGTGATTTGGGAAGGAACTAAAAAAAGAATAAAGGAGATGTTCAACAAGGTTGATCTCTCTGTTTCATCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCGGGAAGGAGCCTTTCTTCCCTGAATGCGTAAATTGGTTGTTAGATAATCAACTTCATGATGGCTCATGGGGTCCTCCTAATCTGCATCAGTTGTTAACAAAAGATGCCCTCTTATCCACGTTAGCCTGCATCCTTGCACTAAAGCGATGGAATATCGGTGAAGAACTAATTGACAGGGGTCTGCATTTTATCGAGTCAAATTTAGCTTCAGCTACTGATGGAGAGCAACCATCTCCTGTTGGGTTTGATATAATATTTCCTTCCATGATTGAATCTGCAATGAATTTCGATGTGACATACAAACTGAGCTTAACATGCAGGTTTGGCCTTGTTATTGGAATCATAGAATGTTTTCTTTCGTTACTGGAAGGAATCGGAAAGTCACAGGACTGGGAGATGGTCATGAAGTACCAGAAGAAGAATGGGTCATTGTTTAACTCACCATCAACTACTGCTGCTGCTTTTACTCACCTCAACAATGCTGGTTGTCTTAGTTATCTACGCTCACTCATAGAAAAGTTTGGAAGTGCAGTTCCAACGATTTATCCTCTAGGTAACTATGCTCGCCTTTCCATGGTTTCCAGTCTTGAAAGTATGGGCGTTGATCGACATTTCAGGAAGGAAATAAGGAGTGTACTCGATGAAACATACAGTTCTCATCCATGGGGAAGCATGACATTACCCAACAGACAATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGATGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTCTTCATGGATATGATGTTTCTGCAGACAGTTTCTTCAATTCCCTTGGAGGATATCTGAAGGACACTGGTGTTGCCTTGGAACTTTTTAGGGCTTCAGAAGTCATCATTCATCCAGATGAATCAGTTCTAGAGAAACAACATTACTGGACAAGTCATTTCTTGAAACAGGAATTAGCAAATAACTTAACTCAGGCTCATAAACTCAATAAGCATATTGATCAGGTGGATGATGCTCTTCGGTTTCCTTCCTATGCAACTCTGGGTCGGTTATCAAGCAGGAAAGCAATAAAATATTACAACACTGATAGTACAAAGATTTTAAAATCTTCTTATCGTTGTTCAAATGTTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATAAGTGTCAATCGATACATCGGGAAGAACTCGAGTATTTTTCAAGGTGGGTTGTCGAGAGCAGATTAGACAAGCTAGAATTTGCTAGGCAGAAGCAGGCATACTGTTACTTCTCTGCTGCTGCAACCATTTTCCCTCCTGAACTATCAGATGCCCGCATATCATGGGCCAAAAACGGAGTGCTTACAACTGTGGTTGATGATTTCTTTGACGTTGGAGGTTCTGAAGAGGAACTAGTCAACCTTGTACAATTGATCGAGAAGTGGGATGTGAATGCAAAAACTGATTCTTGTTCTGAGCAAGTTGAAATCATATTTTCAGCAATTAAGAGCACAATTAATGAGATTGGAGCCAATGCATTCCCACGGCAACAGCGCAGTGTAACAAATCACGTCATAGAGATTTGGTTGGATTTGGTTAAGTCTATGCTGAAGGAAGCTCAGTGGTTGATAAACAATTCGGCGCCGGCACTGGATGAATACATGGAAAATGCATATGTATCATTTGCCTTGGGACCGATTGTGCTTCCAGCTCTCTATTTGGTAGGGCCTAAGCTCTCAGAGGAGGCTGTACGGAGTTTCGAATTCCACCAGTTGTATAAACTTATGAGCACCGGTGGGCGTCTTCTCAATGATATGCAAACCTTTAAGAGGGAATCTGCGGAAGGGAAGCTAAATGCTGTTACATTGGCCATGCTTCATGGCAATGGCAGTGCTACTGACGAAGAGACCTTCAGTGAGATGAAGAGCATTATAGCCATTAAGAGGAGAGAACTGCAAAGACTAGTTTTGCAGAAGGATAGCTTAGTTCCAAGAGCTTGCAAGGACCTGTTTTGGAACATGTGCAAAATTGTGCACCTATTTTATGCAAAGCACGATGGATTCACTGGCATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

724

Amino Acids

81.88

Weight (kDa)

5.72

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	171 - 370	1.5e-34	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	447 - 682	2.4e-68	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	485 - 678	6.2e-40	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	857, 1738
AciI	CCGC	2 cut(s)	1432, 1937
AcoI	YGGCCR	1 cut(s)	1965
AcsI	RAATTY	5 cut(s)	118, 322, 406, 1355, 1859
AcuI	CTGAAG	6 cut(s)	315, 965, 966, 1521, 1727, 1993
AcyI	GRCGYC	2 cut(s)	1739, 1897
AfaI	GTAC	5 cut(s)	533, 759, 1198, 1524, 1848
AfiI	CCNNNNNNNGG	5 cut(s)	122, 697, 1258, 1926, 2040
AflIII	ACRYGT	1 cut(s)	2115
AgeI	ACCGGT	1 cut(s)	1889
AgsI	TTSAA	9 cut(s)	55, 395, 713, 925, 1051, 1230, 1276, 1320, 1583
AhlI	ACTAGT	2 cut(s)	1510, 2059
AjiI	CACGTC	1 cut(s)	1669
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
Alw21I	GWGCWC	3 cut(s)	1610, 1889, 2133
Alw26I	GTCTC	1 cut(s)	1997
Alw44I	GTGCAC	1 cut(s)	2129
AlwNI	CAGNNNCTG	2 cut(s)	338, 854
Ama87I	CYCGRG	1 cut(s)	1307
AoxI	GGCC	4 cut(s)	448, 1443, 1823, 1965
ApaLI	GTGCAC	1 cut(s)	2129
ApeKI	GCWGC	7 cut(s)	4, 7, 578, 581, 823, 1394, 1397
ApoI	RAATTY	5 cut(s)	118, 322, 406, 1355, 1859
AseI	ATTAAT	1 cut(s)	1614
AsiGI	ACCGGT	1 cut(s)	1889
Asp700I	GAANNNNTTC	2 cut(s)	474, 1011
AspLEI	GCGC	2 cut(s)	1653, 1741
AspS9I	GGNCC	6 cut(s)	106, 194, 1443, 1790, 1823, 2101
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	4 cut(s)	25, 293, 555, 584
AsuII	TTCGAA	1 cut(s)	1857
AvaI	CYCGRG	1 cut(s)	1307
AvaII	GGWCC	4 cut(s)	106, 194, 1790, 2101
BaeGI	GKGCMC	1 cut(s)	2133
BalI	TGGCCA	1 cut(s)	1967
BanI	GGYRCC	2 cut(s)	857, 1738
BarI	GAAGNNNNNNTAC	2 cut(s)	1361, 1393
BbsI	GAAGAC	4 cut(s)	881, 1251, 1275, 1892
Bbv12I	GWGCWC	3 cut(s)	1610, 1889, 2133
BbvI	GCAGC	5 cut(s)	565, 568, 810, 1381, 1384
BccI	CCATC	7 cut(s)	176, 264, 335, 361, 514, 574, 2147
BceAI	ACGGC	1 cut(s)	1658
BclI	TGATCA	1 cut(s)	1105
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	1997
BcuI	ACTAGT	2 cut(s)	1510, 2059
BfaI	CTAG	6 cut(s)	674, 1016, 1352, 1362, 1511, 2060
BfmI	CTRYAG	2 cut(s)	824, 909
BfoI	RGCGCY	1 cut(s)	1742
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	7 cut(s)	5, 8, 579, 582, 824, 1395, 1398
BlsI	GCNGC	7 cut(s)	6, 9, 580, 583, 825, 1396, 1399
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	4 cut(s)	106, 194, 1790, 2101
BmeT110I	CYCGRG	1 cut(s)	1307
BmgBI	CACGTC	1 cut(s)	1669
BmgT120I	GGNCC	6 cut(s)	106, 194, 1443, 1790, 1823, 2101
BmiI	GGNNCC	7 cut(s)	108, 132, 195, 859, 1627, 1740, 1791
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	6 cut(s)	217, 217, 261, 841, 1108, 1417
BmuI	ACTGGG	1 cut(s)	523
BoxI	GACNNNNGTC	1 cut(s)	300
BpiI	GAAGAC	4 cut(s)	881, 1251, 1275, 1892
Bpu10I	CCTNAGC	1 cut(s)	1827
Bpu14I	TTCGAA	1 cut(s)	1857
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	1289
BsaHI	GRCGYC	2 cut(s)	1739, 1897
BsaI	GGTCTC	1 cut(s)	1997
BsaJI	CCNNGG	6 cut(s)	696, 785, 931, 963, 1640, 1785
BsaWI	WCCGGW	1 cut(s)	1889
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 697, 1258, 1926, 2040
Bse118I	RCCGGY	2 cut(s)	1741, 1889
Bse1I	ACTGG	9 cut(s)	492, 518, 705, 958, 1037, 1263, 1752, 1867, 2167
Bse3DI	GCAATG	3 cut(s)	108, 408, 1987
BseCI	ATCGAT	1 cut(s)	1289
BseDI	CCNNGG	6 cut(s)	696, 785, 931, 963, 1640, 1785
BseGI	GGATG	7 cut(s)	252, 781, 838, 997, 1120, 1549, 1756
BseLI	CCNNNNNNNGG	5 cut(s)	122, 697, 1258, 1926, 2040
BseMI	GCAATG	3 cut(s)	108, 408, 1987
BseMII	CTCAG	5 cut(s)	419, 1091, 1563, 1730, 1848
BseNI	ACTGG	9 cut(s)	492, 518, 705, 958, 1037, 1263, 1752, 1867, 2167
BseRI	GAGGAG	2 cut(s)	1853, 2056
BseSI	GKGCMC	1 cut(s)	2133
BseXI	GCAGC	5 cut(s)	565, 568, 810, 1381, 1384
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	4 cut(s)	450, 1445, 1825, 1967
BshNI	GGYRCC	2 cut(s)	857, 1738
BshTI	ACCGGT	1 cut(s)	1889
BshVI	ATCGAT	1 cut(s)	1289
BsiHKAI	GWGCWC	3 cut(s)	1610, 1889, 2133
BsiHKCI	CYCGRG	1 cut(s)	1307
BsiSI	CCGG	3 cut(s)	123, 1742, 1890
BslFI	GGGAC	2 cut(s)	92, 1803
BslI	CCNNNNNNNGG	5 cut(s)	122, 697, 1258, 1926, 2040
BsmAI	GTCTC	1 cut(s)	1997
BsmFI	GGGAC	2 cut(s)	92, 1803
BsmI	GAATGC	3 cut(s)	152, 1555, 1634
BsnI	GGCC	4 cut(s)	450, 1445, 1825, 1967
Bso31I	GGTCTC	1 cut(s)	1997
BsoBI	CYCGRG	1 cut(s)	1307
Bsp119I	TTCGAA	1 cut(s)	1857
Bsp1286I	GDGCHC	3 cut(s)	1610, 1889, 2133
Bsp1407I	TGTACA	1 cut(s)	1522
Bsp143I	GATC	4 cut(s)	64, 727, 1105, 1530
Bsp19I	CCATGG	2 cut(s)	696, 785
BspACI	CCGC	2 cut(s)	1432, 1937
BspANI	GGCC	4 cut(s)	450, 1445, 1825, 1967
BspCNI	CTCAG	5 cut(s)	420, 1090, 1564, 1729, 1847
BspDI	ATCGAT	1 cut(s)	1289
BspHI	TCATGA	2 cut(s)	178, 525
BspLI	GGNNCC	7 cut(s)	108, 132, 195, 859, 1627, 1740, 1791
BspMAI	CTGCAG	2 cut(s)	828, 913
BspMI	ACCTGC	1 cut(s)	432
BspQI	GCTCTTC	2 cut(s)	1128, 2015
BspT104I	TTCGAA	1 cut(s)	1857
BspT107I	GGYRCC	2 cut(s)	857, 1738
BspTNI	GGTCTC	1 cut(s)	1997
BsrDI	GCAATG	3 cut(s)	108, 408, 1987
BsrFI	RCCGGY	2 cut(s)	1741, 1889
BsrGI	TGTACA	1 cut(s)	1522
BsrI	ACTGG	9 cut(s)	492, 518, 705, 958, 1037, 1263, 1752, 1867, 2167
BssAI	RCCGGY	2 cut(s)	1741, 1889
BssECI	CCNNGG	6 cut(s)	696, 785, 931, 963, 1640, 1785
BssMI	GATC	4 cut(s)	64, 727, 1105, 1530
BssNI	GRCGYC	2 cut(s)	1739, 1897
BssT1I	CCWWGG	5 cut(s)	696, 785, 931, 963, 1785
Bst4CI	ACNGT	4 cut(s)	776, 917, 1382, 1468
Bst6I	CTCTTC	4 cut(s)	1128, 1497, 1995, 2015
BstACI	GRCGYC	2 cut(s)	1739, 1897
BstAUI	TGTACA	1 cut(s)	1522
BstBI	TTCGAA	1 cut(s)	1857
BstC8I	GCNNGC	8 cut(s)	250, 688, 821, 856, 1374, 1432, 1743, 2095
BstDEI	CTNAG	8 cut(s)	428, 614, 1077, 1572, 1716, 1827, 1834, 2080
BstDSI	CCRYGG	3 cut(s)	696, 785, 1640
BstENI	CCTNNNNNAGG	1 cut(s)	1924
BstF5I	GGATG	7 cut(s)	252, 781, 838, 997, 1120, 1549, 1756
BstH2I	RGCGCY	1 cut(s)	1742
BstHHI	GCGC	2 cut(s)	1653, 1741
BstKTI	GATC	4 cut(s)	67, 730, 1108, 1533
BstMAI	GTCTC	1 cut(s)	1997
BstMBI	GATC	4 cut(s)	64, 727, 1105, 1530
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 438, 447
BstNSI	RCATGY	2 cut(s)	441, 2119
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	2 cut(s)	824, 909
BstSLI	GKGCMC	1 cut(s)	2133
BstV1I	GCAGC	5 cut(s)	565, 568, 810, 1381, 1384
BstV2I	GAAGAC	4 cut(s)	881, 1251, 1275, 1892
Bsu15I	ATCGAT	1 cut(s)	1289
BsuRI	GGCC	4 cut(s)	450, 1445, 1825, 1967
BsuTUI	ATCGAT	1 cut(s)	1289
BtgI	CCRYGG	3 cut(s)	696, 785, 1640
BtgZI	GCGATG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	1669
BtsCI	GGATG	7 cut(s)	252, 781, 838, 997, 1120, 1549, 1756
BtsI	GCAGTG	4 cut(s)	87, 1269, 1660, 1993
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	8 cut(s)	250, 688, 821, 856, 1374, 1432, 1743, 2095
CaiI	CAGNNNCTG	2 cut(s)	338, 854
CciI	TCATGA	2 cut(s)	178, 525
CfoI	GCGC	2 cut(s)	1653, 1741
Cfr10I	RCCGGY	2 cut(s)	1741, 1889
Cfr13I	GGNCC	6 cut(s)	106, 194, 1443, 1790, 1823, 2101
ClaI	ATCGAT	1 cut(s)	1289
CseI	GACGC	1 cut(s)	1886
Csp6I	GTAC	5 cut(s)	532, 758, 1197, 1523, 1847
CspAI	ACCGGT	1 cut(s)	1889
CviQI	GTAC	5 cut(s)	532, 758, 1197, 1523, 1847
DdeI	CTNAG	8 cut(s)	428, 614, 1077, 1572, 1716, 1827, 1834, 2080
DinI	GGCGCC	1 cut(s)	1740
DpnI	GATC	4 cut(s)	66, 729, 1107, 1532
DpnII	GATC	4 cut(s)	64, 727, 1105, 1530
DraI	TTTAAA	1 cut(s)	1209
DrdI	GACNNNNNNGTC	1 cut(s)	885
DseDI	GACNNNNNNGTC	1 cut(s)	885
EaeI	YGGCCR	1 cut(s)	1965
Eam1104I	CTCTTC	4 cut(s)	1128, 1497, 1995, 2015
EarI	CTCTTC	4 cut(s)	1128, 1497, 1995, 2015
Eco130I	CCWWGG	5 cut(s)	696, 785, 931, 963, 1785
Eco31I	GGTCTC	1 cut(s)	1997
Eco32I	GATATC	1 cut(s)	941
Eco47I	GGWCC	4 cut(s)	106, 194, 1790, 2101
Eco57I	CTGAAG	6 cut(s)	315, 965, 966, 1521, 1727, 1993
Eco88I	CYCGRG	1 cut(s)	1307
EcoNI	CCTNNNNNAGG	1 cut(s)	1924
EcoO109I	RGGNCCY	3 cut(s)	194, 1823, 2101
EcoRI	GAATTC	1 cut(s)	1859
EcoRV	GATATC	1 cut(s)	941
EcoT14I	CCWWGG	5 cut(s)	696, 785, 931, 963, 1785
EcoT22I	ATGCAT	2 cut(s)	1636, 1771
EgeI	GGCGCC	1 cut(s)	1740
EheI	GGCGCC	1 cut(s)	1740
ErhI	CCWWGG	5 cut(s)	696, 785, 931, 963, 1785
FalI	AAGNNNNNCTT	2 cut(s)	2063, 2095
FaqI	GGGAC	2 cut(s)	92, 1803
FauI	CCCGC	1 cut(s)	1439
FauNDI	CATATG	2 cut(s)	82, 1771
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	7 cut(s)	5, 8, 579, 582, 824, 1395, 1398
FokI	GGATG	7 cut(s)	239, 768, 845, 984, 1127, 1556, 1763
Fsp4HI	GCNGC	7 cut(s)	5, 8, 579, 582, 824, 1395, 1398
FspBI	CTAG	6 cut(s)	674, 1016, 1352, 1362, 1511, 2060
GlaI	GCGC	2 cut(s)	1652, 1740
GluI	GCNGC	7 cut(s)	5, 8, 579, 582, 824, 1395, 1398
HaeII	RGCGCY	1 cut(s)	1742
HaeIII	GGCC	4 cut(s)	450, 1445, 1825, 1967
HapII	CCGG	3 cut(s)	123, 1742, 1890
HgaI	GACGC	1 cut(s)	1886
HhaI	GCGC	2 cut(s)	1653, 1741
Hin1I	GRCGYC	2 cut(s)	1739, 1897
Hin6I	GCGC	2 cut(s)	1651, 1739
HinP1I	GCGC	2 cut(s)	1651, 1739
HincII	GTYRAC	2 cut(s)	219, 1516
HindII	GTYRAC	2 cut(s)	219, 1516
HinfI	GANTC	9 cut(s)	317, 395, 462, 495, 879, 1007, 1562, 1931, 2157
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	3 cut(s)	123, 1742, 1890
HphI	GGTGA	4 cut(s)	25, 293, 555, 584
Hpy166II	GTNNAC	4 cut(s)	219, 758, 1516, 2131
Hpy188I	TCNGA	8 cut(s)	500, 850, 945, 985, 1426, 1501, 1573, 1837
Hpy8I	GTNNAC	4 cut(s)	219, 758, 1516, 2131
HpyCH4III	ACNGT	4 cut(s)	776, 917, 1382, 1468
HpyCH4IV	ACGT	4 cut(s)	242, 886, 1488, 1668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 438, 447
HpyF3I	CTNAG	8 cut(s)	428, 614, 1077, 1572, 1716, 1827, 1834, 2080
HpySE526I	ACGT	4 cut(s)	242, 886, 1488, 1668
Hsp92I	GRCGYC	2 cut(s)	1739, 1897
HspAI	GCGC	2 cut(s)	1651, 1739
KasI	GGCGCC	1 cut(s)	1738
KroI	GCCGGC	1 cut(s)	1741
KroNI	GCCGGC	1 cut(s)	1743
Ksp22I	TGATCA	1 cut(s)	1105
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	4 cut(s)	64, 727, 1105, 1530
LguI	GCTCTTC	2 cut(s)	1128, 2015
LmnI	GCTCC	2 cut(s)	130, 1625
Lsp1109I	GCAGC	5 cut(s)	565, 568, 810, 1381, 1384
LweI	GCATC	6 cut(s)	217, 217, 261, 841, 1108, 1417
MaeI	CTAG	6 cut(s)	674, 1016, 1352, 1362, 1511, 2060
MaeII	ACGT	4 cut(s)	242, 886, 1488, 1668
MaeIII	GTNAC	7 cut(s)	415, 483, 504, 677, 1382, 1657, 1957
MalI	GATC	4 cut(s)	66, 729, 1107, 1532
MboI	GATC	4 cut(s)	64, 727, 1105, 1530
MfeI	CAATTG	1 cut(s)	1526
MhlI	GDGCHC	3 cut(s)	1610, 1889, 2133
MlsI	TGGCCA	1 cut(s)	1967
MluNI	TGGCCA	1 cut(s)	1967
Mly113I	GGCGCC	1 cut(s)	1739
MlyI	GAGTC	2 cut(s)	326, 873
MmeI	TCCRAC	3 cut(s)	683, 1471, 1665
Mox20I	TGGCCA	1 cut(s)	1967
Mph1103I	ATGCAT	2 cut(s)	1636, 1771
MroNI	GCCGGC	1 cut(s)	1741
MroXI	GAANNNNTTC	2 cut(s)	474, 1011
MscI	TGGCCA	1 cut(s)	1967
MslI	CAYNNNNRTG	4 cut(s)	897, 1002, 1980, 2165
Msp20I	TGGCCA	1 cut(s)	1967
MspI	CCGG	3 cut(s)	123, 1742, 1890
MspR9I	CCNGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	1526
Mva1269I	GAATGC	3 cut(s)	152, 1555, 1634
MwoI	GCNNNNNNNGC	3 cut(s)	98, 438, 447
NaeI	GCCGGC	1 cut(s)	1743
NarI	GGCGCC	1 cut(s)	1739
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	2 cut(s)	696, 785
NdeI	CATATG	2 cut(s)	82, 1771
NdeII	GATC	4 cut(s)	64, 727, 1105, 1530
NgoMIV	GCCGGC	1 cut(s)	1741
NlaIV	GGNNCC	7 cut(s)	108, 132, 195, 859, 1627, 1740, 1791
NmuCI	GTSAC	2 cut(s)	415, 504
NsiI	ATGCAT	2 cut(s)	1636, 1771
NspI	RCATGY	2 cut(s)	441, 2119
NspV	TTCGAA	1 cut(s)	1857
PaeR7I	CTCGAG	1 cut(s)	1307
PagI	TCATGA	2 cut(s)	178, 525
PciI	ACATGT	1 cut(s)	2115
PciSI	GCTCTTC	2 cut(s)	1128, 2015
PcsI	WCGNNNNNNNCGW	1 cut(s)	883
PctI	GAATGC	3 cut(s)	152, 1555, 1634
PdiI	GCCGGC	1 cut(s)	1743
PdmI	GAANNNNTTC	2 cut(s)	474, 1011
PfeI	GAWTC	7 cut(s)	395, 462, 495, 1007, 1562, 1931, 2157
PfoI	TCCNGGA	1 cut(s)	122
PinAI	ACCGGT	1 cut(s)	1889
PkrI	GCNGC	7 cut(s)	6, 9, 580, 583, 825, 1396, 1399
PleI	GAGTC	2 cut(s)	325, 873
PluTI	GGCGCC	1 cut(s)	1742
PpsI	GAGTC	2 cut(s)	325, 873
PpuMI	RGGWCCY	2 cut(s)	194, 2101
PscI	ACATGT	1 cut(s)	2115
PshAI	GACNNNNGTC	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	1614
Psp5II	RGGWCCY	2 cut(s)	194, 2101
PspN4I	GGNNCC	7 cut(s)	108, 132, 195, 859, 1627, 1740, 1791
PspPI	GGNCC	6 cut(s)	106, 194, 1443, 1790, 1823, 2101
PspPPI	RGGWCCY	2 cut(s)	194, 2101
PspXI	VCTCGAGB	1 cut(s)	1307
PstI	CTGCAG	2 cut(s)	828, 913
PstNI	CAGNNNCTG	2 cut(s)	338, 854
RsaI	GTAC	5 cut(s)	533, 759, 1198, 1524, 1848
RsaNI	GTAC	5 cut(s)	532, 758, 1197, 1523, 1847
RseI	CAYNNNNRTG	4 cut(s)	897, 1002, 1980, 2165
SapI	GCTCTTC	2 cut(s)	1128, 2015
SatI	GCNGC	7 cut(s)	5, 8, 579, 582, 824, 1395, 1398
Sau3AI	GATC	4 cut(s)	64, 727, 1105, 1530
Sau96I	GGNCC	6 cut(s)	106, 194, 1443, 1790, 1823, 2101
SchI	GAGTC	2 cut(s)	326, 873
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	3 cut(s)	1610, 1889, 2133
SfaNI	GCATC	6 cut(s)	217, 217, 261, 841, 1108, 1417
SfcI	CTRYAG	2 cut(s)	824, 909
SfoI	GGCGCC	1 cut(s)	1740
Sfr274I	CTCGAG	1 cut(s)	1307
SfuI	TTCGAA	1 cut(s)	1857
SgrAI	CRCCGGYG	1 cut(s)	1889
SinI	GGWCC	4 cut(s)	106, 194, 1790, 2101
SlaI	CTCGAG	1 cut(s)	1307
SmiMI	CAYNNNNRTG	4 cut(s)	897, 1002, 1980, 2165
SmlI	CTYRAG	1 cut(s)	1307
SmoI	CTYRAG	1 cut(s)	1307
SpeI	ACTAGT	2 cut(s)	1510, 2059
SsiI	CCGC	2 cut(s)	1432, 1937
SspDI	GGCGCC	1 cut(s)	1738
SspI	AATATT	2 cut(s)	378, 1181
SspMI	CTAG	6 cut(s)	674, 1016, 1352, 1362, 1511, 2060
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	5 cut(s)	696, 785, 931, 963, 1785
TaaI	ACNGT	4 cut(s)	776, 917, 1382, 1468
TaiI	ACGT	4 cut(s)	245, 889, 1491, 1671
TaqII	GACCGA	1 cut(s)	1807
TatI	WGTACW	3 cut(s)	757, 1196, 1522
TfiI	GAWTC	7 cut(s)	395, 462, 495, 1007, 1562, 1931, 2157
TseFI	GTSAC	2 cut(s)	415, 504
TseI	GCWGC	7 cut(s)	4, 7, 578, 581, 823, 1394, 1397
Tsp45I	GTSAC	2 cut(s)	415, 504
TspGWI	ACGGA	2 cut(s)	1467, 1864
VneI	GTGCAC	1 cut(s)	2129
VpaK11BI	GGWCC	4 cut(s)	106, 194, 1790, 2101
VspI	ATTAAT	1 cut(s)	1614
XagI	CCTNNNNNAGG	1 cut(s)	1924
XapI	RAATTY	5 cut(s)	118, 322, 406, 1355, 1859
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	2 cut(s)	441, 2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	1307
XmnI	GAANNNNTTC	2 cut(s)	474, 1011
XspI	CTAG	6 cut(s)	674, 1016, 1352, 1362, 1511, 2060
Zsp2I	ATGCAT	2 cut(s)	1636, 1771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.