Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17509754 .. 17515416

Gene Structure 5663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGTCCTTCTCCCAGCTCAACACTTTCAGGTGTTGCACCTTTTCCCCATCAGAAAAAAAATTAGGAAAAGTTCTCTTGCCACAAGCAGCTTCAATAGTTCCAAGGACAAATGGCACAGCAGAAGTAAATGCTGCTGTTTTGAGTTTGGATGGAACTAAAAAAAGAATAAAGGAGATGTTCAACAAGGTTGATCTCTCTGTTTCATCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCGGGAAGGAGCCTTTCTTCCCTGAATGCGTAAATTGGTTGTTAGATAATCAACTTCATGATGGCTCATGGGGTCCTCCTAATCTGCATCAGTTGTTAACAAAAGATGCCCTCTTATCCACGTTAGCATGCATCCTTGCACTAAAGCGATGGAATATTGGTGAAGAACTAATTGACAAGGGTCTGCATTTTATCGAGTCAAATTTAGCTTCAGCTACTGATCGAGAGCAACCATCTCCTGTTGGGTTTGGTATAATATTTCCTTCCATGATTGAATCTGCAATGAATTTGGATGTGAATCTACCTTTGGGAGGATTAACCTTAGATGCTTTACTTCTCAGGAGAGACTTTGAGCTTCAAAGAGGCAACAGAAGCAACTCAGAGGGGTGGAGAGCCTATCTCGCATATATTTCAGAAGGAATCGGAAAGTCACAGGACTGGGAGATGGTCATGAAGTACCAGAAGAAGAATGGGTCCTTGTTTAACTCACCATCAACTACTGCTGCTGCTTTTACTCACCTCAACAATGCTGGTTGTCTTAGTTATCTACGCTCACTCATAGAAAAGTTCGGAAGTGCAGTTCCAACGATTTATCCTCTAGATAACTATGCTCGCCTTTCTATGGTTTCCAGTCTTGAAAGTATGGGCGTTGATCGACATTTCAGGGAGGAAATAAGGAGTGTACTCGATGAAACATACAGATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGGTGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTCTTCATGGATATGATGTTTCTGCAGATCCATTAAGTCAATTTTCAGAAGACAGTTTCTTCAATTCCCTTGGAGGATATCTGAAGGACACTGGTGCTGCCTTAGAACTTTTTAGGGCTTCAGAAGTCATCATTCATCCAGATGAATCAGTTCTAGAGAAACAACATTACTGGACAAGTCATTTCTTGAAACAGGAATTATCAAATAACTTAACTCAGGCTCATAAACTCAATAACCATATTGATCAGGTGGATGATGCTCTTCGGTTTCCTTCCTATGCAACTCTGGGTCGGTTATCAAGCAGGAAATCAATAAAATATTACAACACTGATAGTACAAAGATTTTAAAATCTTCTTATCGTTGTTCAAATGTTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATATGTGTCAATCGATTCATCGGGAAGAACTCAAGTATCTTTCAAGGTGGGTTGTCGAGAGCAGATTAGACAAGCTAGAATTTGCTAGGCAGAAGCAGGCATACTGTTACTTCTCTGCTGCTGCAACCCTTTTCCCTCCTGAACTATCAGATGCCCGCATATCATGGGCCAAAAACGGAGTGCTTACAACTGTGGTTGATGATTTCTTTGACGTTGGAGGTTCTGAAGAGGAACTAGTAAACCTTATACAATTGATCGAGAAGTGGGATGTGAACGCAAAAACTGATTCTTGTTCTGAGCAAGTTGAAATCATATTTTCAGCAATTAAGAGCACAATTAATGAGATTGGAGCCAATGCATTCCCGCGGCAACAGCGCAGTGTAACAAATCACGTCATAGAGATTGTAAGATGGAATCTCTTTAACTTGTCCATGTTATCATTGTTCTATCTATTGATCGAGTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

633

Amino Acids

71.41

Weight (kDa)

5.52

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	228 - 421	1.4e-41	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	499 - 613	9.3e-33	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	537 - 613	9.6e-10	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1017
AccB1I	GGYRCC	1 cut(s)	989
AccII	CGCG	1 cut(s)	1798
AciI	CCGC	3 cut(s)	1588, 1796, 1798
AclWI	GGATC	1 cut(s)	1040
AcsI	RAATTY	4 cut(s)	244, 448, 532, 1511
AcuI	CTGAAG	4 cut(s)	441, 1121, 1122, 1677
AfaI	GTAC	4 cut(s)	704, 930, 1354, 1895
AfiI	CCNNNNNNNGG	4 cut(s)	248, 557, 868, 1414
AhlI	ACTAGT	1 cut(s)	1666
AjiI	CACGTC	1 cut(s)	1825
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AloI	GAACNNNNNNTCC	2 cut(s)	810, 842
AluBI	AGCT	6 cut(s)	16, 89, 455, 461, 601, 1507
AluI	AGCT	6 cut(s)	16, 89, 455, 461, 601, 1507
Alw21I	GWGCWC	1 cut(s)	1766
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	1 cut(s)	1040
AlwNI	CAGNNNCTG	3 cut(s)	464, 951, 986
AoxI	GGCC	1 cut(s)	1599
ApeKI	GCWGC	8 cut(s)	86, 131, 749, 752, 955, 1115, 1550, 1553
ApoI	RAATTY	4 cut(s)	244, 448, 532, 1511
AseI	ATTAAT	1 cut(s)	1770
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspLEI	GCGC	1 cut(s)	1809
AspS9I	GGNCC	4 cut(s)	232, 320, 720, 1599
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	419, 726, 755
AvaII	GGWCC	3 cut(s)	232, 320, 720
BaeI	ACNNNNGTAYC	2 cut(s)	1451, 1484
BanI	GGYRCC	1 cut(s)	989
BarI	GAAGNNNNNNTAC	2 cut(s)	1517, 1549
BbsI	GAAGAC	4 cut(s)	1013, 1074, 1407, 1431
Bbv12I	GWGCWC	1 cut(s)	1766
BbvI	GCAGC	8 cut(s)	98, 118, 736, 739, 942, 1102, 1537, 1540
BccI	CCATC	8 cut(s)	55, 143, 302, 390, 487, 685, 745, 1836
BclI	TGATCA	1 cut(s)	1261
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	585
BcuI	ACTAGT	1 cut(s)	1666
BfaI	CTAG	5 cut(s)	845, 1172, 1508, 1518, 1667
BfmI	CTRYAG	2 cut(s)	956, 1041
BisI	GCNGC	9 cut(s)	87, 132, 750, 753, 956, 1116, 1551, 1554, 1799
BlsI	GCNGC	9 cut(s)	88, 133, 751, 754, 957, 1117, 1552, 1555, 1800
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	3 cut(s)	232, 320, 720
BmgBI	CACGTC	1 cut(s)	1825
BmgT120I	GGNCC	4 cut(s)	232, 320, 720, 1599
BmiI	GGNNCC	6 cut(s)	234, 258, 321, 721, 991, 1783
BmrFI	CCNGG	1 cut(s)	250
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	7 cut(s)	343, 343, 387, 562, 938, 1264, 1573
BmuI	ACTGGG	1 cut(s)	694
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	4 cut(s)	1013, 1074, 1407, 1431
BplI	GAGNNNNNCTC	2 cut(s)	630, 662
BpuEI	CTTGAG	1 cut(s)	1448
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	1445
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	101, 1087, 1796
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 557, 868, 1414
Bse1I	ACTGG	6 cut(s)	689, 876, 1114, 1193, 1419, 1897
Bse3DI	GCAATG	2 cut(s)	234, 534
Bse8I	GATNNNNATC	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	1445
BseDI	CCNNGG	3 cut(s)	101, 1087, 1796
BseGI	GGATG	7 cut(s)	154, 378, 544, 970, 1153, 1276, 1705
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	4 cut(s)	248, 557, 868, 1414
BseMI	GCAATG	2 cut(s)	234, 534
BseMII	CTCAG	4 cut(s)	598, 639, 1247, 1719
BseNI	ACTGG	6 cut(s)	689, 876, 1114, 1193, 1419, 1897
BseXI	GCAGC	8 cut(s)	98, 118, 736, 739, 942, 1102, 1537, 1540
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	1798
BshFI	GGCC	1 cut(s)	1601
BshNI	GGYRCC	1 cut(s)	989
BshVI	ATCGAT	1 cut(s)	1445
BsiHKAI	GWGCWC	1 cut(s)	1766
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	248, 557, 868, 1414
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	2 cut(s)	278, 1790
BsnI	GGCC	1 cut(s)	1601
Bsp1286I	GDGCHC	1 cut(s)	1766
Bsp143I	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
BspACI	CCGC	3 cut(s)	1588, 1796, 1798
BspANI	GGCC	1 cut(s)	1601
BspCNI	CTCAG	4 cut(s)	597, 638, 1246, 1720
BspDI	ATCGAT	1 cut(s)	1445
BspFNI	CGCG	1 cut(s)	1798
BspHI	TCATGA	2 cut(s)	304, 696
BspLI	GGNNCC	6 cut(s)	234, 258, 321, 721, 991, 1783
BspMAI	CTGCAG	2 cut(s)	960, 1045
BspPI	GGATC	1 cut(s)	1040
BspQI	GCTCTTC	1 cut(s)	1284
BspT107I	GGYRCC	1 cut(s)	989
BsrDI	GCAATG	2 cut(s)	234, 534
BsrI	ACTGG	6 cut(s)	689, 876, 1114, 1193, 1419, 1897
BssECI	CCNNGG	3 cut(s)	101, 1087, 1796
BssMI	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
BssT1I	CCWWGG	2 cut(s)	101, 1087
Bst4CI	ACNGT	3 cut(s)	1073, 1538, 1624
Bst6I	CTCTTC	2 cut(s)	1284, 1653
BstC8I	GCNNGC	6 cut(s)	376, 859, 953, 988, 1530, 1588
BstDEI	CTNAG	7 cut(s)	568, 584, 625, 785, 1120, 1233, 1728
BstDSI	CCRYGG	1 cut(s)	1796
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	7 cut(s)	154, 378, 544, 970, 1153, 1276, 1705
BstFNI	CGCG	1 cut(s)	1798
BstHHI	GCGC	1 cut(s)	1809
BstKTI	GATC	7 cut(s)	193, 469, 901, 1048, 1264, 1689, 1890
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 618, 647, 1804
BstNSI	RCATGY	1 cut(s)	378
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	2 cut(s)	956, 1041
BstUI	CGCG	1 cut(s)	1798
BstV1I	GCAGC	8 cut(s)	98, 118, 736, 739, 942, 1102, 1537, 1540
BstV2I	GAAGAC	4 cut(s)	1013, 1074, 1407, 1431
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
Bsu15I	ATCGAT	1 cut(s)	1445
BsuRI	GGCC	1 cut(s)	1601
BsuTUI	ATCGAT	1 cut(s)	1445
BtgI	CCRYGG	1 cut(s)	1796
BtgZI	GCGATG	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	1825
BtsCI	GGATG	7 cut(s)	154, 378, 544, 970, 1153, 1276, 1705
BtsI	GCAGTG	3 cut(s)	213, 1425, 1816
BtsIMutI	CAGTG	5 cut(s)	213, 1107, 1344, 1425, 1816
Cac8I	GCNNGC	6 cut(s)	376, 859, 953, 988, 1530, 1588
CaiI	CAGNNNCTG	3 cut(s)	464, 951, 986
CciI	TCATGA	2 cut(s)	304, 696
CfoI	GCGC	1 cut(s)	1809
Cfr13I	GGNCC	4 cut(s)	232, 320, 720, 1599
Cfr42I	CCGCGG	1 cut(s)	1799
ClaI	ATCGAT	1 cut(s)	1445
Csp6I	GTAC	4 cut(s)	703, 929, 1353, 1894
CviAII	CATG	8 cut(s)	305, 315, 375, 514, 697, 1025, 1596, 1864
CviQI	GTAC	4 cut(s)	703, 929, 1353, 1894
DdeI	CTNAG	7 cut(s)	568, 584, 625, 785, 1120, 1233, 1728
DpnI	GATC	7 cut(s)	192, 468, 900, 1047, 1263, 1688, 1889
DpnII	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
DraI	TTTAAA	1 cut(s)	1365
DrdI	GACNNNNNNGTC	1 cut(s)	1017
DseDI	GACNNNNNNGTC	1 cut(s)	1017
Eam1104I	CTCTTC	2 cut(s)	1284, 1653
EarI	CTCTTC	2 cut(s)	1284, 1653
Eco130I	CCWWGG	2 cut(s)	101, 1087
Eco32I	GATATC	1 cut(s)	1097
Eco47I	GGWCC	3 cut(s)	232, 320, 720
Eco57I	CTGAAG	4 cut(s)	441, 1121, 1122, 1677
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	2 cut(s)	320, 720
EcoRV	GATATC	1 cut(s)	1097
EcoT14I	CCWWGG	2 cut(s)	101, 1087
EcoT22I	ATGCAT	2 cut(s)	380, 1792
ErhI	CCWWGG	2 cut(s)	101, 1087
FaeI	CATG	8 cut(s)	308, 318, 378, 517, 700, 1028, 1599, 1867
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	8 cut(s)	304, 314, 374, 513, 696, 1024, 1595, 1863
FauI	CCCGC	2 cut(s)	1595, 1803
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	1261
Fnu4HI	GCNGC	9 cut(s)	87, 132, 750, 753, 956, 1116, 1551, 1554, 1799
FokI	GGATG	7 cut(s)	161, 365, 551, 977, 1140, 1283, 1712
Fsp4HI	GCNGC	9 cut(s)	87, 132, 750, 753, 956, 1116, 1551, 1554, 1799
FspBI	CTAG	5 cut(s)	845, 1172, 1508, 1518, 1667
GlaI	GCGC	1 cut(s)	1808
GluI	GCNGC	9 cut(s)	87, 132, 750, 753, 956, 1116, 1551, 1554, 1799
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	1601
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	1809
Hin1II	CATG	8 cut(s)	308, 318, 378, 517, 700, 1028, 1599, 1867
Hin6I	GCGC	1 cut(s)	1807
HinP1I	GCGC	1 cut(s)	1807
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	9 cut(s)	443, 521, 544, 666, 1011, 1163, 1447, 1718, 1846
HpaI	GTTAAC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	419, 726, 755
Hpy166II	GTNNAC	4 cut(s)	345, 929, 1672, 1705
Hpy8I	GTNNAC	4 cut(s)	345, 929, 1672, 1705
HpyAV	CCTTC	7 cut(s)	16, 246, 247, 519, 656, 1096, 1299
HpyCH4III	ACNGT	3 cut(s)	1073, 1538, 1624
HpyCH4IV	ACGT	4 cut(s)	368, 1018, 1644, 1824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 618, 647, 1804
HpyF3I	CTNAG	7 cut(s)	568, 584, 625, 785, 1120, 1233, 1728
HpySE526I	ACGT	4 cut(s)	368, 1018, 1644, 1824
Hsp92II	CATG	8 cut(s)	308, 318, 378, 517, 700, 1028, 1599, 1867
HspAI	GCGC	1 cut(s)	1807
Ksp22I	TGATCA	1 cut(s)	1261
KspAI	GTTAAC	1 cut(s)	345
KspI	CCGCGG	1 cut(s)	1799
Kzo9I	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
LguI	GCTCTTC	1 cut(s)	1284
LmnI	GCTCC	2 cut(s)	256, 1781
Lsp1109I	GCAGC	8 cut(s)	98, 118, 736, 739, 942, 1102, 1537, 1540
LweI	GCATC	7 cut(s)	343, 343, 387, 562, 938, 1264, 1573
MaeI	CTAG	5 cut(s)	845, 1172, 1508, 1518, 1667
MaeII	ACGT	4 cut(s)	368, 1018, 1644, 1824
MaeIII	GTNAC	3 cut(s)	675, 1538, 1813
MalI	GATC	7 cut(s)	192, 468, 900, 1047, 1263, 1688, 1889
MboI	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
MfeI	CAATTG	1 cut(s)	1682
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	1766
MlyI	GAGTC	2 cut(s)	452, 1005
MmeI	TCCRAC	2 cut(s)	854, 1627
Mph1103I	ATGCAT	2 cut(s)	380, 1792
MroXI	GAANNNNTTC	1 cut(s)	1167
MseI	TTAA	9 cut(s)	344, 563, 729, 1052, 1229, 1364, 1758, 1770, 1854
MslI	CAYNNNNRTG	3 cut(s)	946, 1029, 1158
MspA1I	CMGCKG	1 cut(s)	1798
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	1682
Mva1269I	GAATGC	2 cut(s)	278, 1790
MvnI	CGCG	1 cut(s)	1798
MwoI	GCNNNNNNNGC	4 cut(s)	224, 618, 647, 1804
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
NlaIII	CATG	8 cut(s)	308, 318, 378, 517, 700, 1028, 1599, 1867
NlaIV	GGNNCC	6 cut(s)	234, 258, 321, 721, 991, 1783
NmuCI	GTSAC	1 cut(s)	675
NsiI	ATGCAT	2 cut(s)	380, 1792
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PagI	TCATGA	2 cut(s)	304, 696
PciSI	GCTCTTC	1 cut(s)	1284
PcsI	WCGNNNNNNNCGW	1 cut(s)	1015
PctI	GAATGC	2 cut(s)	278, 1790
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	7 cut(s)	521, 544, 666, 1163, 1447, 1718, 1846
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	9 cut(s)	88, 133, 751, 754, 957, 1117, 1552, 1555, 1800
PleI	GAGTC	2 cut(s)	451, 1005
PpsI	GAGTC	2 cut(s)	451, 1005
PpuMI	RGGWCCY	2 cut(s)	320, 720
PshAI	GACNNNNGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	1770
Psp5II	RGGWCCY	2 cut(s)	320, 720
PspFI	CCCAGC	1 cut(s)	12
PspN4I	GGNNCC	6 cut(s)	234, 258, 321, 721, 991, 1783
PspPI	GGNCC	4 cut(s)	232, 320, 720, 1599
PspPPI	RGGWCCY	2 cut(s)	320, 720
PstI	CTGCAG	2 cut(s)	960, 1045
PstNI	CAGNNNCTG	3 cut(s)	464, 951, 986
PsuI	RGATCY	1 cut(s)	1045
RsaI	GTAC	4 cut(s)	704, 930, 1354, 1895
RsaNI	GTAC	4 cut(s)	703, 929, 1353, 1894
RseI	CAYNNNNRTG	3 cut(s)	946, 1029, 1158
SacII	CCGCGG	1 cut(s)	1799
SapI	GCTCTTC	1 cut(s)	1284
SaqAI	TTAA	9 cut(s)	344, 563, 729, 1052, 1229, 1364, 1758, 1770, 1854
SatI	GCNGC	9 cut(s)	87, 132, 750, 753, 956, 1116, 1551, 1554, 1799
Sau3AI	GATC	7 cut(s)	190, 466, 898, 1045, 1261, 1686, 1887
Sau96I	GGNCC	4 cut(s)	232, 320, 720, 1599
SchI	GAGTC	2 cut(s)	452, 1005
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	1766
SfaNI	GCATC	7 cut(s)	343, 343, 387, 562, 938, 1264, 1573
SfcI	CTRYAG	2 cut(s)	956, 1041
Sfr303I	CCGCGG	1 cut(s)	1799
SgrBI	CCGCGG	1 cut(s)	1799
SinI	GGWCC	3 cut(s)	232, 320, 720
SmiMI	CAYNNNNRTG	3 cut(s)	946, 1029, 1158
SmlI	CTYRAG	1 cut(s)	1463
SmoI	CTYRAG	1 cut(s)	1463
SpeI	ACTAGT	1 cut(s)	1666
SphI	GCATGC	1 cut(s)	378
SsiI	CCGC	3 cut(s)	1588, 1796, 1798
SspI	AATATT	3 cut(s)	403, 504, 1337
SspMI	CTAG	5 cut(s)	845, 1172, 1508, 1518, 1667
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	101, 1087
TaaI	ACNGT	3 cut(s)	1073, 1538, 1624
TaiI	ACGT	4 cut(s)	371, 1021, 1647, 1827
TaqI	TCGA	9 cut(s)	441, 469, 901, 933, 1009, 1445, 1488, 1689, 1890
TatI	WGTACW	2 cut(s)	928, 1352
TauI	GCSGC	1 cut(s)	1801
TfiI	GAWTC	7 cut(s)	521, 544, 666, 1163, 1447, 1718, 1846
Tru1I	TTAA	9 cut(s)	344, 563, 729, 1052, 1229, 1364, 1758, 1770, 1854
Tru9I	TTAA	9 cut(s)	344, 563, 729, 1052, 1229, 1364, 1758, 1770, 1854
TscAI	CASTG	5 cut(s)	220, 1114, 1351, 1425, 1816
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	8 cut(s)	86, 131, 749, 752, 955, 1115, 1550, 1553
Tsp45I	GTSAC	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	1623
TspRI	CASTG	5 cut(s)	220, 1114, 1351, 1425, 1816
VpaK11BI	GGWCC	3 cut(s)	232, 320, 720
VspI	ATTAAT	1 cut(s)	1770
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	4 cut(s)	244, 448, 532, 1511
XbaI	TCTAGA	2 cut(s)	844, 1171
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	5 cut(s)	845, 1172, 1508, 1518, 1667
Zsp2I	ATGCAT	2 cut(s)	380, 1792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.