Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17761292 .. 17764105

Gene Structure 2814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGGTCATGAAGTACCAGAAGAAGAATGGGTCATTGTTTAACTCACCATCAACTACTGCTGCTGCTTTTACTCACCTCAACAATGCTGGTTGTCTTAGTTATCTACGCTCACTCATAGAAAAGTTTGGAAGTGCAGTTCCAACGATTTATCCTCTAGGTAACTATGCTCGCCTTTCCATGGTTTCCAGTCTTGAAAGTATGGGCGTTGATCGACATTTCAGGAAGGAAATAAGGAGTGTACTCGATGAAACATACAGTTCTCATCCATGGGGAAGCATGACATTACCCAACAGACAATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGATGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTCTTCATGGATATGATGTTTCTGCAGACAGTTTCTTCAATTCCCTTGGAGGATATCTGAAGGACACTGGTGTTGCCTTGGAACTTTTTAGGGCTTCAGAAGTCATCATTCATCCAGATGAATCAGTTCTAGAGAAACAACATTACTGGACAAGTCATTTCTTGAAACAGGAATTAGCAAATAACTTAACTCAGGCTCATAAACTCAATAAGCATATTGATCAGGTGGATGATGCTCTTCGGTTTCCTTCCTATGCAACTCTGGGTCGGTTATCAAGCAGGAAAGCAATAAAATATTACAACACTGATAGTACAAAGATTTTAAAATCTTCTTATCGTTGTTCAAATGTTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATAAGTGTCAATCGATACATCGGGAAGAACTCGAGTATTTTTCAAGGTGGGTTGTCGAGAGCAGATTAGACAAGCTAGAATTTGCTAGGCAGAAGCAGGCATACTGTTACTTCTCTGCTGCTGCAACCATTTTCCCTCCTGAACTATCAGATGCCCGCATATCATGGGCCAAAAACGGAGTGCTTACAACTGTGGTTGATGATTTCTTTGACGTTGGAGGTTCTGAAGAGGAACTAGTCAACCTTGTACAATTGATCGAGAAGTGGGATGTGAATGCAAAAACTGATTCTTGTTCTGAGCAAGTTGAAATCATATTTTCAGCAATTAAGAGCACAATTAATGAGATTGGAGCCAATGCATTCCCACGGCAACAGCGCAGTGTAACAAATCACGTCATAGAGATTTGGTTGGATTTGGTTAAGTCTATGCTGAAGGAAGCTCAGTGGTTGATAAACAATTCGGCGCCGGCACTGGATGAATACATGGAAAATGCATATGTATCATTTGCCTTGGGACCGATTGTGCTTCCAGCTCTCTATTTGGTAGGGCCTAAGCTCTCAGAGGAGGCTGTACGGAGTTTCGAATTCCACCAGTTGTATAAACTTATGAGCACCGGTGGGCGTCTTCTCAATGATATGCAAACCTTTAAGAGGGAATCTGCGGAAGGGAAGCTAAATGCTGTTACATTGGCCATGCTTCATGGCAATGGCAGTGCTACTGACGAAGAGACCTTCAGTGAGATGAAGAGCATTATAGCCATTAAGAGGAGAGAACTGCAAAGACTAGTTTTGCAGAAGGATAGCTTAGTTCCAAGAGCTTGCAAGGACCTGTTTTGGAACATGTGCAAAATTGTGCACCTATTTTATGCAAAGCACGATGGATTCACTGGCATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

551

Amino Acids

62.51

Weight (kDa)

6.23

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	2 - 197	5.3e-33	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	274 - 509	1.3e-68	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	312 - 505	3.6e-40	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	366
AccB1I	GGYRCC	2 cut(s)	338, 1219
AciI	CCGC	2 cut(s)	913, 1418
AcoI	YGGCCR	1 cut(s)	1446
AcsI	RAATTY	2 cut(s)	836, 1340
AcuI	CTGAAG	5 cut(s)	446, 447, 1002, 1208, 1474
AcyI	GRCGYC	2 cut(s)	1220, 1378
AfaI	GTAC	5 cut(s)	14, 240, 679, 1005, 1329
AfiI	CCNNNNNNNGG	4 cut(s)	178, 739, 1407, 1521
AflIII	ACRYGT	1 cut(s)	1596
AgeI	ACCGGT	1 cut(s)	1370
AgsI	TTSAA	7 cut(s)	194, 406, 532, 711, 757, 801, 1064
AhlI	ACTAGT	2 cut(s)	991, 1540
AjiI	CACGTC	1 cut(s)	1150
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	7 cut(s)	832, 1196, 1289, 1312, 1429, 1560, 1574
AluI	AGCT	7 cut(s)	832, 1196, 1289, 1312, 1429, 1560, 1574
Alw21I	GWGCWC	3 cut(s)	1091, 1370, 1614
Alw26I	GTCTC	1 cut(s)	1478
Alw44I	GTGCAC	1 cut(s)	1610
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	924, 1304, 1446
ApaLI	GTGCAC	1 cut(s)	1610
ApeKI	GCWGC	5 cut(s)	59, 62, 304, 875, 878
ApoI	RAATTY	2 cut(s)	836, 1340
AseI	ATTAAT	1 cut(s)	1095
AsiGI	ACCGGT	1 cut(s)	1370
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	1134, 1222
AspS9I	GGNCC	4 cut(s)	924, 1271, 1304, 1582
AsuHPI	GGTGA	2 cut(s)	36, 65
AsuII	TTCGAA	1 cut(s)	1338
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	2 cut(s)	1271, 1582
BaeGI	GKGCMC	1 cut(s)	1614
BalI	TGGCCA	1 cut(s)	1448
BanI	GGYRCC	2 cut(s)	338, 1219
BarI	GAAGNNNNNNTAC	2 cut(s)	842, 874
BbsI	GAAGAC	4 cut(s)	362, 732, 756, 1373
Bbv12I	GWGCWC	3 cut(s)	1091, 1370, 1614
BbvI	GCAGC	5 cut(s)	46, 49, 291, 862, 865
BccI	CCATC	2 cut(s)	55, 1628
BceAI	ACGGC	1 cut(s)	1139
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	1478
BcuI	ACTAGT	2 cut(s)	991, 1540
BfaI	CTAG	6 cut(s)	155, 497, 833, 843, 992, 1541
BfmI	CTRYAG	2 cut(s)	305, 390
BfoI	RGCGCY	1 cut(s)	1223
BisI	GCNGC	5 cut(s)	60, 63, 305, 876, 879
BlsI	GCNGC	5 cut(s)	61, 64, 306, 877, 880
Bme18I	GGWCC	2 cut(s)	1271, 1582
BmeT110I	CYCGRG	1 cut(s)	788
BmgBI	CACGTC	1 cut(s)	1150
BmgT120I	GGNCC	4 cut(s)	924, 1271, 1304, 1582
BmiI	GGNNCC	4 cut(s)	340, 1108, 1221, 1272
BmsI	GCATC	3 cut(s)	322, 589, 898
BpiI	GAAGAC	4 cut(s)	362, 732, 756, 1373
Bpu10I	CCTNAGC	1 cut(s)	1308
Bpu14I	TTCGAA	1 cut(s)	1338
Bsa29I	ATCGAT	1 cut(s)	770
BsaHI	GRCGYC	2 cut(s)	1220, 1378
BsaI	GGTCTC	1 cut(s)	1478
BsaJI	CCNNGG	6 cut(s)	177, 266, 412, 444, 1121, 1266
BsaWI	WCCGGW	1 cut(s)	1370
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 739, 1407, 1521
Bse118I	RCCGGY	2 cut(s)	1222, 1370
Bse1I	ACTGG	7 cut(s)	186, 439, 518, 744, 1233, 1348, 1648
Bse3DI	GCAATG	1 cut(s)	1468
BseCI	ATCGAT	1 cut(s)	770
BseDI	CCNNGG	6 cut(s)	177, 266, 412, 444, 1121, 1266
BseGI	GGATG	6 cut(s)	262, 319, 478, 601, 1030, 1237
BseLI	CCNNNNNNNGG	4 cut(s)	178, 739, 1407, 1521
BseMI	GCAATG	1 cut(s)	1468
BseMII	CTCAG	4 cut(s)	572, 1044, 1211, 1329
BseNI	ACTGG	7 cut(s)	186, 439, 518, 744, 1233, 1348, 1648
BseRI	GAGGAG	2 cut(s)	1334, 1537
BseSI	GKGCMC	1 cut(s)	1614
BseXI	GCAGC	5 cut(s)	46, 49, 291, 862, 865
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	926, 1306, 1448
BshNI	GGYRCC	2 cut(s)	338, 1219
BshTI	ACCGGT	1 cut(s)	1370
BshVI	ATCGAT	1 cut(s)	770
BsiHKAI	GWGCWC	3 cut(s)	1091, 1370, 1614
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	1223, 1371
BslFI	GGGAC	1 cut(s)	1284
BslI	CCNNNNNNNGG	4 cut(s)	178, 739, 1407, 1521
BsmAI	GTCTC	1 cut(s)	1478
BsmFI	GGGAC	1 cut(s)	1284
BsmI	GAATGC	2 cut(s)	1036, 1115
BsnI	GGCC	3 cut(s)	926, 1306, 1448
Bso31I	GGTCTC	1 cut(s)	1478
BsoBI	CYCGRG	1 cut(s)	788
Bsp119I	TTCGAA	1 cut(s)	1338
Bsp1286I	GDGCHC	3 cut(s)	1091, 1370, 1614
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp143I	GATC	3 cut(s)	208, 586, 1011
Bsp19I	CCATGG	2 cut(s)	177, 266
BspACI	CCGC	2 cut(s)	913, 1418
BspANI	GGCC	3 cut(s)	926, 1306, 1448
BspCNI	CTCAG	4 cut(s)	571, 1045, 1210, 1328
BspDI	ATCGAT	1 cut(s)	770
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	4 cut(s)	340, 1108, 1221, 1272
BspMAI	CTGCAG	2 cut(s)	309, 394
BspQI	GCTCTTC	2 cut(s)	609, 1496
BspT104I	TTCGAA	1 cut(s)	1338
BspT107I	GGYRCC	2 cut(s)	338, 1219
BspTNI	GGTCTC	1 cut(s)	1478
BsrDI	GCAATG	1 cut(s)	1468
BsrFI	RCCGGY	2 cut(s)	1222, 1370
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	7 cut(s)	186, 439, 518, 744, 1233, 1348, 1648
BssAI	RCCGGY	2 cut(s)	1222, 1370
BssECI	CCNNGG	6 cut(s)	177, 266, 412, 444, 1121, 1266
BssMI	GATC	3 cut(s)	208, 586, 1011
BssNI	GRCGYC	2 cut(s)	1220, 1378
BssT1I	CCWWGG	5 cut(s)	177, 266, 412, 444, 1266
Bst4CI	ACNGT	4 cut(s)	257, 398, 863, 949
Bst6I	CTCTTC	4 cut(s)	609, 978, 1476, 1496
BstACI	GRCGYC	2 cut(s)	1220, 1378
BstAUI	TGTACA	1 cut(s)	1003
BstBI	TTCGAA	1 cut(s)	1338
BstC8I	GCNNGC	7 cut(s)	169, 302, 337, 855, 913, 1224, 1576
BstDEI	CTNAG	7 cut(s)	95, 558, 1053, 1197, 1308, 1315, 1561
BstDSI	CCRYGG	3 cut(s)	177, 266, 1121
BstENI	CCTNNNNNAGG	1 cut(s)	1405
BstF5I	GGATG	6 cut(s)	262, 319, 478, 601, 1030, 1237
BstH2I	RGCGCY	1 cut(s)	1223
BstHHI	GCGC	2 cut(s)	1134, 1222
BstKTI	GATC	3 cut(s)	211, 589, 1014
BstMAI	GTCTC	1 cut(s)	1478
BstMBI	GATC	3 cut(s)	208, 586, 1011
BstNSI	RCATGY	1 cut(s)	1600
BstSFI	CTRYAG	2 cut(s)	305, 390
BstSLI	GKGCMC	1 cut(s)	1614
BstV1I	GCAGC	5 cut(s)	46, 49, 291, 862, 865
BstV2I	GAAGAC	4 cut(s)	362, 732, 756, 1373
Bsu15I	ATCGAT	1 cut(s)	770
BsuRI	GGCC	3 cut(s)	926, 1306, 1448
BsuTUI	ATCGAT	1 cut(s)	770
BtgI	CCRYGG	3 cut(s)	177, 266, 1121
BtrI	CACGTC	1 cut(s)	1150
BtsCI	GGATG	6 cut(s)	262, 319, 478, 601, 1030, 1237
BtsI	GCAGTG	3 cut(s)	750, 1141, 1474
BtsIMutI	CAGTG	9 cut(s)	432, 669, 750, 1141, 1205, 1226, 1474, 1498, 1641
Cac8I	GCNNGC	7 cut(s)	169, 302, 337, 855, 913, 1224, 1576
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	2 cut(s)	1134, 1222
Cfr10I	RCCGGY	2 cut(s)	1222, 1370
Cfr13I	GGNCC	4 cut(s)	924, 1271, 1304, 1582
ClaI	ATCGAT	1 cut(s)	770
CseI	GACGC	1 cut(s)	1367
Csp6I	GTAC	5 cut(s)	13, 239, 678, 1004, 1328
CspAI	ACCGGT	1 cut(s)	1370
CviQI	GTAC	5 cut(s)	13, 239, 678, 1004, 1328
DdeI	CTNAG	7 cut(s)	95, 558, 1053, 1197, 1308, 1315, 1561
DinI	GGCGCC	1 cut(s)	1221
DpnI	GATC	3 cut(s)	210, 588, 1013
DpnII	GATC	3 cut(s)	208, 586, 1011
DraI	TTTAAA	1 cut(s)	690
DrdI	GACNNNNNNGTC	1 cut(s)	366
DseDI	GACNNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	1446
Eam1104I	CTCTTC	4 cut(s)	609, 978, 1476, 1496
EarI	CTCTTC	4 cut(s)	609, 978, 1476, 1496
Eco130I	CCWWGG	5 cut(s)	177, 266, 412, 444, 1266
Eco31I	GGTCTC	1 cut(s)	1478
Eco32I	GATATC	1 cut(s)	422
Eco47I	GGWCC	2 cut(s)	1271, 1582
Eco57I	CTGAAG	5 cut(s)	446, 447, 1002, 1208, 1474
Eco88I	CYCGRG	1 cut(s)	788
EcoNI	CCTNNNNNAGG	1 cut(s)	1405
EcoO109I	RGGNCCY	2 cut(s)	1304, 1582
EcoRI	GAATTC	1 cut(s)	1340
EcoRV	GATATC	1 cut(s)	422
EcoT14I	CCWWGG	5 cut(s)	177, 266, 412, 444, 1266
EcoT22I	ATGCAT	2 cut(s)	1117, 1252
EgeI	GGCGCC	1 cut(s)	1221
EheI	GGCGCC	1 cut(s)	1221
ErhI	CCWWGG	5 cut(s)	177, 266, 412, 444, 1266
FalI	AAGNNNNNCTT	2 cut(s)	1544, 1576
FaqI	GGGAC	1 cut(s)	1284
FauI	CCCGC	1 cut(s)	920
FauNDI	CATATG	1 cut(s)	1252
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	5 cut(s)	60, 63, 305, 876, 879
FokI	GGATG	6 cut(s)	249, 326, 465, 608, 1037, 1244
Fsp4HI	GCNGC	5 cut(s)	60, 63, 305, 876, 879
FspBI	CTAG	6 cut(s)	155, 497, 833, 843, 992, 1541
GlaI	GCGC	2 cut(s)	1133, 1221
GluI	GCNGC	5 cut(s)	60, 63, 305, 876, 879
HaeII	RGCGCY	1 cut(s)	1223
HaeIII	GGCC	3 cut(s)	926, 1306, 1448
HapII	CCGG	2 cut(s)	1223, 1371
HgaI	GACGC	1 cut(s)	1367
HhaI	GCGC	2 cut(s)	1134, 1222
Hin1I	GRCGYC	2 cut(s)	1220, 1378
Hin6I	GCGC	2 cut(s)	1132, 1220
HinP1I	GCGC	2 cut(s)	1132, 1220
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	5 cut(s)	360, 488, 1043, 1412, 1638
HpaII	CCGG	2 cut(s)	1223, 1371
HphI	GGTGA	2 cut(s)	36, 65
Hpy166II	GTNNAC	3 cut(s)	239, 997, 1612
Hpy188I	TCNGA	7 cut(s)	331, 426, 466, 907, 982, 1054, 1318
Hpy8I	GTNNAC	3 cut(s)	239, 997, 1612
HpyAV	CCTTC	7 cut(s)	217, 421, 624, 1183, 1415, 1498, 1546
HpyCH4III	ACNGT	4 cut(s)	257, 398, 863, 949
HpyCH4IV	ACGT	3 cut(s)	367, 969, 1149
HpyF3I	CTNAG	7 cut(s)	95, 558, 1053, 1197, 1308, 1315, 1561
HpySE526I	ACGT	3 cut(s)	367, 969, 1149
Hsp92I	GRCGYC	2 cut(s)	1220, 1378
HspAI	GCGC	2 cut(s)	1132, 1220
KasI	GGCGCC	1 cut(s)	1219
KroI	GCCGGC	1 cut(s)	1222
KroNI	GCCGGC	1 cut(s)	1224
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	208, 586, 1011
LguI	GCTCTTC	2 cut(s)	609, 1496
LmnI	GCTCC	1 cut(s)	1106
Lsp1109I	GCAGC	5 cut(s)	46, 49, 291, 862, 865
LweI	GCATC	3 cut(s)	322, 589, 898
MaeI	CTAG	6 cut(s)	155, 497, 833, 843, 992, 1541
MaeII	ACGT	3 cut(s)	367, 969, 1149
MaeIII	GTNAC	4 cut(s)	158, 863, 1138, 1438
MalI	GATC	3 cut(s)	210, 588, 1013
MboI	GATC	3 cut(s)	208, 586, 1011
MfeI	CAATTG	1 cut(s)	1007
MhlI	GDGCHC	3 cut(s)	1091, 1370, 1614
MlsI	TGGCCA	1 cut(s)	1448
MluCI	AATT	9 cut(s)	406, 539, 836, 1007, 1080, 1092, 1213, 1340, 1605
MluNI	TGGCCA	1 cut(s)	1448
Mly113I	GGCGCC	1 cut(s)	1220
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	3 cut(s)	164, 952, 1146
Mox20I	TGGCCA	1 cut(s)	1448
Mph1103I	ATGCAT	2 cut(s)	1117, 1252
MroNI	GCCGGC	1 cut(s)	1222
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	1448
MseI	TTAA	8 cut(s)	39, 554, 689, 1083, 1095, 1176, 1404, 1518
MslI	CAYNNNNRTG	4 cut(s)	378, 483, 1461, 1646
Msp20I	TGGCCA	1 cut(s)	1448
MspI	CCGG	2 cut(s)	1223, 1371
MunI	CAATTG	1 cut(s)	1007
Mva1269I	GAATGC	2 cut(s)	1036, 1115
NaeI	GCCGGC	1 cut(s)	1224
NarI	GGCGCC	1 cut(s)	1220
NcoI	CCATGG	2 cut(s)	177, 266
NdeI	CATATG	1 cut(s)	1252
NdeII	GATC	3 cut(s)	208, 586, 1011
NgoMIV	GCCGGC	1 cut(s)	1222
NlaIV	GGNNCC	4 cut(s)	340, 1108, 1221, 1272
NsiI	ATGCAT	2 cut(s)	1117, 1252
NspI	RCATGY	1 cut(s)	1600
NspV	TTCGAA	1 cut(s)	1338
PaeR7I	CTCGAG	1 cut(s)	788
PagI	TCATGA	1 cut(s)	6
PciI	ACATGT	1 cut(s)	1596
PciSI	GCTCTTC	2 cut(s)	609, 1496
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	2 cut(s)	1036, 1115
PdiI	GCCGGC	1 cut(s)	1224
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	488, 1043, 1412, 1638
PinAI	ACCGGT	1 cut(s)	1370
PkrI	GCNGC	5 cut(s)	61, 64, 306, 877, 880
PleI	GAGTC	1 cut(s)	354
PluTI	GGCGCC	1 cut(s)	1223
PpsI	GAGTC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	1582
PscI	ACATGT	1 cut(s)	1596
PshBI	ATTAAT	1 cut(s)	1095
Psp5II	RGGWCCY	1 cut(s)	1582
PspN4I	GGNNCC	4 cut(s)	340, 1108, 1221, 1272
PspPI	GGNCC	4 cut(s)	924, 1271, 1304, 1582
PspPPI	RGGWCCY	1 cut(s)	1582
PspXI	VCTCGAGB	1 cut(s)	788
PstI	CTGCAG	2 cut(s)	309, 394
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	5 cut(s)	14, 240, 679, 1005, 1329
RsaNI	GTAC	5 cut(s)	13, 239, 678, 1004, 1328
RseI	CAYNNNNRTG	4 cut(s)	378, 483, 1461, 1646
SapI	GCTCTTC	2 cut(s)	609, 1496
SaqAI	TTAA	8 cut(s)	39, 554, 689, 1083, 1095, 1176, 1404, 1518
SatI	GCNGC	5 cut(s)	60, 63, 305, 876, 879
Sau3AI	GATC	3 cut(s)	208, 586, 1011
Sau96I	GGNCC	4 cut(s)	924, 1271, 1304, 1582
SchI	GAGTC	1 cut(s)	354
SduI	GDGCHC	3 cut(s)	1091, 1370, 1614
SfaNI	GCATC	3 cut(s)	322, 589, 898
SfcI	CTRYAG	2 cut(s)	305, 390
SfoI	GGCGCC	1 cut(s)	1221
Sfr274I	CTCGAG	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	1338
SgrAI	CRCCGGYG	1 cut(s)	1370
SinI	GGWCC	2 cut(s)	1271, 1582
SlaI	CTCGAG	1 cut(s)	788
SmiMI	CAYNNNNRTG	4 cut(s)	378, 483, 1461, 1646
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
SpeI	ACTAGT	2 cut(s)	991, 1540
Sse9I	AATT	9 cut(s)	406, 539, 836, 1007, 1080, 1092, 1213, 1340, 1605
SsiI	CCGC	2 cut(s)	913, 1418
SspDI	GGCGCC	1 cut(s)	1219
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	6 cut(s)	155, 497, 833, 843, 992, 1541
StyI	CCWWGG	5 cut(s)	177, 266, 412, 444, 1266
TaaI	ACNGT	4 cut(s)	257, 398, 863, 949
TaiI	ACGT	3 cut(s)	370, 972, 1152
TaqI	TCGA	8 cut(s)	211, 243, 358, 770, 789, 813, 1014, 1338
TaqII	GACCGA	1 cut(s)	1288
TasI	AATT	9 cut(s)	406, 539, 836, 1007, 1080, 1092, 1213, 1340, 1605
TatI	WGTACW	3 cut(s)	238, 677, 1003
TfiI	GAWTC	4 cut(s)	488, 1043, 1412, 1638
Tru1I	TTAA	8 cut(s)	39, 554, 689, 1083, 1095, 1176, 1404, 1518
Tru9I	TTAA	8 cut(s)	39, 554, 689, 1083, 1095, 1176, 1404, 1518
TscAI	CASTG	9 cut(s)	439, 676, 750, 1141, 1205, 1233, 1474, 1498, 1648
TseI	GCWGC	5 cut(s)	59, 62, 304, 875, 878
TspGWI	ACGGA	2 cut(s)	948, 1345
TspRI	CASTG	9 cut(s)	439, 676, 750, 1141, 1205, 1233, 1474, 1498, 1648
VneI	GTGCAC	1 cut(s)	1610
VpaK11BI	GGWCC	2 cut(s)	1271, 1582
VspI	ATTAAT	1 cut(s)	1095
XagI	CCTNNNNNAGG	1 cut(s)	1405
XapI	RAATTY	2 cut(s)	836, 1340
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	1600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	788
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	6 cut(s)	155, 497, 833, 843, 992, 1541
Zsp2I	ATGCAT	2 cut(s)	1117, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.