Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Reverse (-)

15242765 .. 15244998

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTTCAATAAGGTTGATCTCTCTGTTTCCTCGTACGATACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCTCAGGACCCTTTTTTCCCTGAATGTGTCAACTGGCTATTGTGTAATCAACTCCACGACGGGTCATGGGGTCATCCAAATTGCCATCCTTTGTTAAAGAAAGATGCTCTTTTATCTACGTTAGCATGTATCCTTGCACTAAAGCAATGGAGTGTTGGTGAAGAGCTAATTAACAACGGACTACGTTTTATTGAGTCAAATATATCTTCAGCTACCGATGAAGTGCAACAATCTCCTCTTGGATTTGATATAATATTTCCTTCTTTGATACAATCCGCAATGAATTTGAATATCAATCTTCCCCTTGGAGAAACAACCCTGGCCAGTATTTTCCACATGAGAGACTTTGAGCTTCAAAGTCAACATCTATCTTGTTTCCAAATGTTATCCTTTAGAGGAAATGGAAGCAACTCAGAGGGTTGGAGAGCCTTCTTAGCTTATATTTCGGAAGGAAATGCAGAGTTGCAGGATTGGCAGACGGTTATGAAGTACCAAAGGAAGAATGGGTCCTTGTTTAATTCACCATCAACCACAGCCGCTGCTTTTACTCACACTAAGAATGCTGATTGTCTTCAGTACCTCCGCAGACTCTTAGACAAGTTTGGGAATGCAGTTCCAACGATATATCCTCTAGATAAATATGCTCGTCTTTCTATGGTTTCCAGCCTTGAAAGTTTGGGTATCGATCGACATTTCAGGGATGAAATTAGAAGCGTAATCGATGAAACATACAGATTATGGCTGCAGGGGGATGAAGAAATATTTTCAGATGCTGCCACCTGTGCAATGGCGTTTCGACTCTTACGTGTTAATGGATATGGCATTTCTGCAGATCCATTAGTAAAATTTTCCGAAGATTGTTTCTTCAATTCCTACGGAGGATACTTGAAGGACGTTAGTGCTGCCTTAGAATTGTTTAAGGCTTCCAAAATCATCATACATCCAGATGAGTCAATTCTTGAGAAACAAAACTACTGGACAAGTCATTTTCTGAAAGAAGAGTTATCCAATATGTTAATTCAGCCTCATAGACCGAATAAGCACATTGCCCTAGAGGTGGATCATGCTCTTAAATCCCCTTACCATGCAAATTTGGGACGGTTATCAACCAAGAGAGCTATAAAACATTACAACACAGATGGTACAAGGATTCTGAAATCTTCGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

415

Amino Acids

46.97

Weight (kDa)

6.16

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	348, 609, 655
AclWI	GGATC	2 cut(s)	899, 1140
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	4 cut(s)	70, 355, 917, 1162
AcuI	CTGAAG	2 cut(s)	264, 629
AfaI	GTAC	4 cut(s)	35, 563, 650, 1216
AfiI	CCNNNNNNNGG	1 cut(s)	1129
AflIII	ACRYGT	1 cut(s)	877
AgsI	TTSAA	6 cut(s)	7, 361, 428, 743, 940, 961
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	5 cut(s)	238, 284, 424, 509, 1190
AluI	AGCT	5 cut(s)	238, 284, 424, 509, 1190
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	899, 1140
AlwNI	CAGNNNCTG	2 cut(s)	611, 845
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	611, 814, 845, 974
ApoI	RAATTY	4 cut(s)	70, 355, 917, 1162
AspS9I	GGNCC	3 cut(s)	58, 79, 579
AsuHPI	GGTGA	2 cut(s)	242, 585
AvaII	GGWCC	3 cut(s)	58, 79, 579
BalI	TGGCCA	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	598, 801, 832, 961
BccI	CCATC	3 cut(s)	165, 604, 1205
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	2 cut(s)	212, 947
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	704, 1124
BfmI	CTRYAG	2 cut(s)	815, 900
BfuI	GTATCC	2 cut(s)	212, 947
BisI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
BlsI	GCNGC	5 cut(s)	610, 613, 816, 847, 976
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	3 cut(s)	58, 79, 579
BmgT120I	GGNCC	3 cut(s)	58, 79, 579
BmiI	GGNNCC	3 cut(s)	60, 81, 580
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	166, 832
BpiI	GAAGAC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	1052
Bsa29I	ATCGAT	2 cut(s)	756, 792
BsaAI	YACGTR	1 cut(s)	878
BsaJI	CCNNGG	2 cut(s)	376, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	1129
Bse1I	ACTGG	3 cut(s)	110, 396, 1052
Bse3DI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	2 cut(s)	756, 792
BseDI	CCNNGG	2 cut(s)	376, 390
BseGI	GGATG	5 cut(s)	145, 157, 778, 829, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	1129
BseMI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BseMII	CTCAG	2 cut(s)	89, 498
BseNI	ACTGG	3 cut(s)	110, 396, 1052
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	598, 801, 832, 961
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	395
BshVI	ATCGAT	2 cut(s)	756, 792
BsiEI	CGRYCG	1 cut(s)	760
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	44, 1182
BslI	CCNNNNNNNGG	1 cut(s)	1129
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	44, 1182
BsmI	GAATGC	2 cut(s)	637, 685
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	16, 757, 904, 1132
BspACI	CCGC	3 cut(s)	348, 609, 655
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	88, 497
BspDI	ATCGAT	2 cut(s)	756, 792
BspLI	GGNNCC	3 cut(s)	60, 81, 580
BspMAI	CTGCAG	2 cut(s)	819, 904
BspPI	GGATC	2 cut(s)	899, 1140
BspQI	GCTCTTC	1 cut(s)	228
BsrDI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BsrI	ACTGG	3 cut(s)	110, 396, 1052
BssECI	CCNNGG	2 cut(s)	376, 390
BssMI	GATC	4 cut(s)	16, 757, 904, 1132
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	553, 1173
Bst6I	CTCTTC	2 cut(s)	228, 1065
BstBAI	YACGTR	1 cut(s)	878
BstDEI	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
BstF5I	GGATG	5 cut(s)	145, 157, 778, 829, 1012
BstKTI	GATC	4 cut(s)	19, 760, 907, 1135
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	16, 757, 904, 1132
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	815, 900
BstV1I	GCAGC	4 cut(s)	598, 801, 832, 961
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
Bsu15I	ATCGAT	2 cut(s)	756, 792
BsuI	GTATCC	2 cut(s)	212, 947
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	2 cut(s)	756, 792
BtsCI	GGATG	5 cut(s)	145, 157, 778, 829, 1012
CaiI	CAGNNNCTG	2 cut(s)	611, 845
Cfr13I	GGNCC	3 cut(s)	58, 79, 579
ClaI	ATCGAT	2 cut(s)	756, 792
Csp6I	GTAC	4 cut(s)	34, 562, 649, 1215
CviAII	CATG	5 cut(s)	138, 198, 409, 1136, 1157
CviQI	GTAC	4 cut(s)	34, 562, 649, 1215
DdeI	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
DpnI	GATC	4 cut(s)	18, 759, 906, 1134
DpnII	GATC	4 cut(s)	16, 757, 904, 1132
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	228, 1065
EarI	CTCTTC	2 cut(s)	228, 1065
Eco130I	CCWWGG	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	58, 79, 579
Eco57I	CTGAAG	2 cut(s)	264, 629
EcoO109I	RGGNCCY	2 cut(s)	79, 579
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	5 cut(s)	141, 201, 412, 1139, 1160
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	44, 1182
FatI	CATG	5 cut(s)	137, 197, 408, 1135, 1156
Fnu4HI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
FokI	GGATG	5 cut(s)	132, 144, 785, 836, 999
Fsp4HI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
FspBI	CTAG	2 cut(s)	704, 1124
GluI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	5 cut(s)	141, 201, 412, 1139, 1160
HincII	GTYRAC	2 cut(s)	103, 434
HindII	GTYRAC	2 cut(s)	103, 434
HinfI	GANTC	5 cut(s)	266, 660, 870, 1022, 1222
HphI	GGTGA	2 cut(s)	242, 585
Hpy166II	GTNNAC	2 cut(s)	103, 434
Hpy188I	TCNGA	6 cut(s)	487, 520, 841, 925, 1065, 1227
Hpy188III	TCNNGA	4 cut(s)	77, 704, 1016, 1031
Hpy8I	GTNNAC	2 cut(s)	103, 434
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	72, 342, 511, 515, 955
HpyCH4III	ACNGT	2 cut(s)	553, 1173
HpyCH4IV	ACGT	4 cut(s)	191, 256, 877, 966
HpyCH4V	TGCA	9 cut(s)	209, 298, 530, 538, 683, 817, 857, 902, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
HpyF3I	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
HpySE526I	ACGT	4 cut(s)	191, 256, 877, 966
Hsp92II	CATG	5 cut(s)	141, 201, 412, 1139, 1160
Kzo9I	GATC	4 cut(s)	16, 757, 904, 1132
LguI	GCTCTTC	1 cut(s)	228
Lsp1109I	GCAGC	4 cut(s)	598, 801, 832, 961
LweI	GCATC	2 cut(s)	166, 832
MaeI	CTAG	2 cut(s)	704, 1124
MaeII	ACGT	4 cut(s)	191, 256, 877, 966
MalI	GATC	4 cut(s)	18, 759, 906, 1134
MboI	GATC	4 cut(s)	16, 757, 904, 1132
MflI	RGATCY	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	4 cut(s)	275, 654, 864, 1031
MmeI	TCCRAC	2 cut(s)	473, 713
MnlI	CCTC	9 cut(s)	40, 318, 461, 481, 662, 711, 944, 1107, 1120
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
MslI	CAYNNNNRTG	1 cut(s)	1017
Msp20I	TGGCCA	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	2 cut(s)	637, 685
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
NdeII	GATC	4 cut(s)	16, 757, 904, 1132
NlaIII	CATG	5 cut(s)	141, 201, 412, 1139, 1160
NlaIV	GGNNCC	3 cut(s)	60, 81, 580
NspI	RCATGY	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PctI	GAATGC	2 cut(s)	637, 685
PfeI	GAWTC	1 cut(s)	1222
Pfl23II	CGTACG	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	610, 613, 816, 847, 976
Ple19I	CGATCG	1 cut(s)	760
PleI	GAGTC	4 cut(s)	274, 654, 864, 1030
PpsI	GAGTC	4 cut(s)	274, 654, 864, 1030
Ppu21I	YACGTR	1 cut(s)	878
PpuMI	RGGWCCY	2 cut(s)	79, 579
Psp5II	RGGWCCY	2 cut(s)	79, 579
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	60, 81, 580
PspPI	GGNCC	3 cut(s)	58, 79, 579
PspPPI	RGGWCCY	2 cut(s)	79, 579
PstI	CTGCAG	2 cut(s)	819, 904
PstNI	CAGNNNCTG	2 cut(s)	611, 845
PsuI	RGATCY	1 cut(s)	904
PvuI	CGATCG	1 cut(s)	760
RsaI	GTAC	4 cut(s)	35, 563, 650, 1216
RsaNI	GTAC	4 cut(s)	34, 562, 649, 1215
RseI	CAYNNNNRTG	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
SatI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
Sau3AI	GATC	4 cut(s)	16, 757, 904, 1132
Sau96I	GGNCC	3 cut(s)	58, 79, 579
SchI	GAGTC	4 cut(s)	275, 654, 864, 1031
ScrFI	CCNGG	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	166, 832
SfcI	CTRYAG	2 cut(s)	815, 900
SinI	GGWCC	3 cut(s)	58, 79, 579
SmiMI	CAYNNNNRTG	1 cut(s)	1017
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SsiI	CCGC	3 cut(s)	348, 609, 655
SspI	AATATT	2 cut(s)	327, 834
SspMI	CTAG	2 cut(s)	704, 1124
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	553, 1173
TaiI	ACGT	4 cut(s)	194, 259, 880, 969
TaqI	TCGA	4 cut(s)	756, 760, 792, 868
TaqII	GACCGA	1 cut(s)	1120
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	1222
Tru1I	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
Tru9I	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
TseI	GCWGC	4 cut(s)	611, 814, 845, 974
TspDTI	ATGAA	6 cut(s)	306, 368, 572, 789, 810, 840
TspGWI	ACGGA	2 cut(s)	264, 963
VpaK11BI	GGWCC	3 cut(s)	58, 79, 579
XapI	RAATTY	4 cut(s)	70, 355, 917, 1162
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	2 cut(s)	572, 856
XspI	CTAG	2 cut(s)	704, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.