Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

17295126 .. 17300224

Gene Structure 5099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG165500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGTCCTTCTCCCAGCTCAACACTTTCAGGTGTTGCACCTTGTCCCCATCAGGAAAAGATCTCTTGCCACAAGCAGCTTCAATAGTTCCATGGACAAATGGCACAGCAGAAGTAAATACTGATGTTTTGAGTTTGGAAGGAACTAAAAAAAGAATAAGGAAGATGTTCAACAAGGTTGATCTCTCTGTTTCATCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCGGGAAGGAGCCTTTCTTCCCTGAATGCGTAAATTGGTTGTTAGATAATCAACTTCATGATGGCTCATGGGGTCCTCCTAATCTGCATCAGTTGTTAACAAAAGATGCCCTCTTATCCACGTTAGCATGCATCCTTGCACTAAAGCGATGGAATATTGGTGAAGAACTAATCGACAAGGGTCTGCATTTTATCGAGTCAAATTTAGCTTCAGCTACTGATGGAGAGCAACCATCTCCTGTTGGGTTTGATATAATATTTCCTTCCATGATTGAATCTGCAATGAATTTGGATGTGAATCTACCTTTGAGAGGATTAACCTTAGATGCTTTACTTCTCAGGAGAGACTTTGAGCTTCAAAGAGGCAACAGAAGCAACTCAGAGGGGTGGAGAGCCTATCTCGCATATATTTCAGAAGGAATCGGAAAGTCACAGGACTGGGAGATGGTCATGAAGTACCAGAAGAAGAATGGGTCCTTGTTTAACTCACCATCAACTACTGCTACTGCTTTTACTCACCTCAACAATGCTGGTTGTCTTAGTTATCTACGCTCACTCATAGAAAAGTTTGGAAGTGCAGTTCCAACGATTTATCCTCTAGATAACTATGCTCGCCTTTCTATGGTTTCCAGCCTTGAAAGTATGGGCGTTGATCGACATTTCAGGGAGGAAATAAGGAGTGTACTCGATGAAACATACAGATGCTGGCTGCAGGGGGATGAAGATATATTTTCAGATGCTGGCACCTGTGCTATGGCATTTCGACTCTTACGTCTTCATGGATATGATGTTTCTGCAGATCCATTAAGTCAATTTTCAGAAGACAGTTTCTTCAATTCCCTTGGAGGATATCTGAAGGACACTGGTGCTGCCTTAGAACTTTTTAGGGCTTCAGAAGTCATCATTCATCCAGATGAATCAGTTCTAGAGAAACAACATTACTGGACAAGTCATTTCTTGAAACAGGAATTATCAAATAACTTAACTCAGGCTCATAAACTCAATAAGCATATTGATCAGGTGGATGATGCTCTTCGGTTTCCTTCCTATGCGACTCTGGGTCGGTTATCAAGCAGGAAAGCAATAAAATATTACAATACTGATAGTACAAAGATTTTAAAATCTTCTTATCGTTGTTCAAATGTTGGGAATGAAGACTTCCTAAAACTGGCAGTGGAAGACTTCAATATGTGTCAATCGATACATCGGGAAGAACTCGAGTATCTTTCAAGGTGGGTTGTCGAGAGCAGATTAGACAAGCTAGAATTTGCTAGGCAGAAGCAGGCATACTGTTACTTCTCTGCTGCTGCAACCCTTTTCCCTCCTGAACTATCAGATGCCCGCATATCATGGGCCAAAAACGGAGTGCTTACAACTGTGGTTGATGATTTCTTTGACGTTGGAGGTTCTGAAGAGGAACTAGTAAACCTTATACAATTGATCGAGAAGTGGGATGTGAATGCAAAAACTGATTCTTGTTCTGAGCAAGTTGAAATCATATTTTCAGCAATTAAGAGCACAATTAATGAGATTGGAGCCAAGGCATTCCCACGGCAACAGCGCAGTGTAACAAATCACGTCATAGAGATTTGGTTGGATTTGGTTAAGTCTATGCTGAAGGAAGCTCAGTGGTTGATCAACAATTCGGTGCCGGCACTGGATGAATACATGGAAAATGCATATGTATCATTTGCCTTGGGACCGATTGTGCTTCCAGCTCTCTATTTGGTAGGGCCTAAGCTCTCAGAGGAGGCTGTACGGAGTCTCGAATTCCACCAGTTGTATAAACTTATTAGCACCGGTGGGCGTCTTCTCAATGATATGCAAACCTTTAAGAGGGAATCTGCAGAAGGGAAGCTAAATGCTGTTACATTGGCCATGCTTCATGGCAATGGCAGTGCTACTGAAGAAGAGACCTTCAGTGAGATGAAGAGCATTATAGCCATTAAGAGGAGAGAACTGCAGAGACTAGTTTTGCAGAAGGATAGCTTAGTTCCAAGAGCTTGCAAGGACCTGTTTTGGAACATGTGCAAAATTGTGCACCTATTTTATGCAAAGCACGATGGATTCACTGGGCATGACTTGATGAAAACCGTAAATGGACTAACCGAAGAACCGATCATTCTCAGTGAATTGCAAGTAGAAAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

795

Amino Acids

89.74

Weight (kDa)

5.44

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	224 - 418	1.2e-42	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	495 - 730	2.8e-69	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	533 - 727	2.5e-41	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1005
AccB1I	GGYRCC	2 cut(s)	977, 1882
AciI	CCGC	1 cut(s)	1576
AclWI	GGATC	1 cut(s)	1028
AcoI	YGGCCR	1 cut(s)	2109
AcsI	RAATTY	5 cut(s)	232, 436, 520, 1499, 2003
AcuI	CTGAAG	7 cut(s)	429, 1109, 1110, 1665, 1871, 2137, 2160
AcyI	GRCGYC	1 cut(s)	2041
AfaI	GTAC	4 cut(s)	692, 918, 1342, 1992
AfiI	CCNNNNNNNGG	6 cut(s)	236, 545, 856, 1402, 2070, 2184
AflIII	ACRYGT	1 cut(s)	2259
AgeI	ACCGGT	1 cut(s)	2033
AhdI	GACNNNNNGTC	1 cut(s)	1293
AhlI	ACTAGT	2 cut(s)	1654, 2203
AjiI	CACGTC	1 cut(s)	1813
AloI	GAACNNNNNNTCC	2 cut(s)	798, 830
Alw21I	GWGCWC	2 cut(s)	1754, 2277
Alw26I	GTCTC	4 cut(s)	573, 2003, 2141, 2194
Alw44I	GTGCAC	1 cut(s)	2273
AlwI	GGATC	1 cut(s)	1028
AlwNI	CAGNNNCTG	3 cut(s)	452, 939, 974
Ama87I	CYCGRG	1 cut(s)	1451
AoxI	GGCC	3 cut(s)	1587, 1967, 2109
ApaLI	GTGCAC	1 cut(s)	2273
ApeKI	GCWGC	5 cut(s)	74, 943, 1103, 1538, 1541
ApoI	RAATTY	5 cut(s)	232, 436, 520, 1499, 2003
AseI	ATTAAT	1 cut(s)	1758
AsiGI	ACCGGT	1 cut(s)	2033
Asp700I	GAANNNNTTC	2 cut(s)	164, 1155
AspLEI	GCGC	1 cut(s)	1797
AspS9I	GGNCC	7 cut(s)	220, 308, 708, 1587, 1934, 1967, 2245
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	407, 714, 743
AvaI	CYCGRG	1 cut(s)	1451
AvaII	GGWCC	5 cut(s)	220, 308, 708, 1934, 2245
BaeGI	GKGCMC	1 cut(s)	2277
BaeI	ACNNNNGTAYC	2 cut(s)	1439, 1472
BalI	TGGCCA	1 cut(s)	2111
BanI	GGYRCC	2 cut(s)	977, 1882
BarI	GAAGNNNNNNTAC	2 cut(s)	1505, 1537
BbsI	GAAGAC	5 cut(s)	1001, 1062, 1395, 1419, 2036
Bbv12I	GWGCWC	2 cut(s)	1754, 2277
BbvI	GCAGC	5 cut(s)	86, 930, 1090, 1525, 1528
BccI	CCATC	8 cut(s)	55, 290, 378, 449, 475, 673, 733, 2291
BceAI	ACGGC	1 cut(s)	1802
BclI	TGATCA	2 cut(s)	1249, 1869
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	573, 2003, 2141, 2194
BcuI	ACTAGT	2 cut(s)	1654, 2203
BfaI	CTAG	6 cut(s)	833, 1160, 1496, 1506, 1655, 2204
BfmI	CTRYAG	4 cut(s)	944, 1029, 2079, 2195
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	5 cut(s)	75, 944, 1104, 1539, 1542
BlsI	GCNGC	5 cut(s)	76, 945, 1105, 1540, 1543
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	5 cut(s)	220, 308, 708, 1934, 2245
BmeRI	GACNNNNNGTC	1 cut(s)	1293
BmeT110I	CYCGRG	1 cut(s)	1451
BmgBI	CACGTC	1 cut(s)	1813
BmgT120I	GGNCC	7 cut(s)	220, 308, 708, 1587, 1934, 1967, 2245
BmiI	GGNNCC	8 cut(s)	222, 246, 309, 709, 979, 1771, 1884, 1935
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	2 cut(s)	682, 2316
BmsI	GCATC	8 cut(s)	331, 331, 375, 550, 926, 961, 1252, 1561
BmuI	ACTGGG	2 cut(s)	682, 2316
BoxI	GACNNNNGTC	1 cut(s)	414
BpiI	GAAGAC	5 cut(s)	1001, 1062, 1395, 1419, 2036
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
Bpu10I	CCTNAGC	1 cut(s)	1971
BpuMI	CCSGG	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	1433
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	2041
BsaI	GGTCTC	1 cut(s)	2141
BsaJI	CCNNGG	5 cut(s)	89, 1075, 1773, 1784, 1929
BsaWI	WCCGGW	1 cut(s)	2033
Bsc4I	CCNNNNNNNGG	6 cut(s)	236, 545, 856, 1402, 2070, 2184
Bse118I	RCCGGY	2 cut(s)	1885, 2033
Bse1I	ACTGG	7 cut(s)	677, 1102, 1181, 1407, 1896, 2011, 2311
Bse3DI	GCAATG	3 cut(s)	222, 522, 2131
Bse8I	GATNNNNATC	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	1433
BseDI	CCNNGG	5 cut(s)	89, 1075, 1773, 1784, 1929
BseGI	GGATG	7 cut(s)	366, 532, 958, 1141, 1264, 1693, 1900
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	6 cut(s)	236, 545, 856, 1402, 2070, 2184
BseMI	GCAATG	3 cut(s)	222, 522, 2131
BseMII	CTCAG	7 cut(s)	586, 627, 1235, 1707, 1874, 1992, 2374
BseNI	ACTGG	7 cut(s)	677, 1102, 1181, 1407, 1896, 2011, 2311
BseRI	GAGGAG	2 cut(s)	1997, 2200
BseSI	GKGCMC	1 cut(s)	2277
BseXI	GCAGC	5 cut(s)	86, 930, 1090, 1525, 1528
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	3 cut(s)	1589, 1969, 2111
BshNI	GGYRCC	2 cut(s)	977, 1882
BshTI	ACCGGT	1 cut(s)	2033
BshVI	ATCGAT	1 cut(s)	1433
BsiHKAI	GWGCWC	2 cut(s)	1754, 2277
BsiHKCI	CYCGRG	1 cut(s)	1451
BsiSI	CCGG	3 cut(s)	237, 1886, 2034
BslFI	GGGAC	3 cut(s)	28, 206, 1947
BslI	CCNNNNNNNGG	6 cut(s)	236, 545, 856, 1402, 2070, 2184
BsmAI	GTCTC	4 cut(s)	573, 2003, 2141, 2194
BsmFI	GGGAC	3 cut(s)	28, 206, 1947
BsmI	GAATGC	3 cut(s)	266, 1699, 1778
BsnI	GGCC	3 cut(s)	1589, 1969, 2111
Bso31I	GGTCTC	1 cut(s)	2141
BsoBI	CYCGRG	1 cut(s)	1451
Bsp1286I	GDGCHC	2 cut(s)	1754, 2277
Bsp143I	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	1576
BspANI	GGCC	3 cut(s)	1589, 1969, 2111
BspCNI	CTCAG	7 cut(s)	585, 626, 1234, 1708, 1873, 1991, 2373
BspDI	ATCGAT	1 cut(s)	1433
BspHI	TCATGA	2 cut(s)	292, 684
BspLI	GGNNCC	8 cut(s)	222, 246, 309, 709, 979, 1771, 1884, 1935
BspMAI	CTGCAG	4 cut(s)	948, 1033, 2083, 2199
BspPI	GGATC	1 cut(s)	1028
BspQI	GCTCTTC	2 cut(s)	1272, 2159
BspT107I	GGYRCC	2 cut(s)	977, 1882
BspTNI	GGTCTC	1 cut(s)	2141
BsrDI	GCAATG	3 cut(s)	222, 522, 2131
BsrFI	RCCGGY	2 cut(s)	1885, 2033
BsrI	ACTGG	7 cut(s)	677, 1102, 1181, 1407, 1896, 2011, 2311
BssAI	RCCGGY	2 cut(s)	1885, 2033
BssECI	CCNNGG	5 cut(s)	89, 1075, 1773, 1784, 1929
BssMI	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
BssNI	GRCGYC	1 cut(s)	2041
BssT1I	CCWWGG	4 cut(s)	89, 1075, 1773, 1929
Bst4CI	ACNGT	4 cut(s)	1061, 1526, 1612, 2329
Bst6I	CTCTTC	4 cut(s)	1272, 1641, 2139, 2159
BstACI	GRCGYC	1 cut(s)	2041
BstC8I	GCNNGC	8 cut(s)	364, 847, 941, 976, 1518, 1576, 1887, 2239
BstDSI	CCRYGG	2 cut(s)	89, 1784
BstENI	CCTNNNNNAGG	2 cut(s)	543, 2068
BstF5I	GGATG	7 cut(s)	366, 532, 958, 1141, 1264, 1693, 1900
BstHHI	GCGC	1 cut(s)	1797
BstKTI	GATC	8 cut(s)	61, 181, 889, 1036, 1252, 1677, 1872, 2355
BstMAI	GTCTC	4 cut(s)	573, 2003, 2141, 2194
BstMBI	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 606, 635
BstNSI	RCATGY	2 cut(s)	366, 2263
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	4 cut(s)	944, 1029, 2079, 2195
BstSLI	GKGCMC	1 cut(s)	2277
BstV1I	GCAGC	5 cut(s)	86, 930, 1090, 1525, 1528
BstV2I	GAAGAC	5 cut(s)	1001, 1062, 1395, 1419, 2036
BstX2I	RGATCY	2 cut(s)	58, 1033
BstYI	RGATCY	2 cut(s)	58, 1033
Bsu15I	ATCGAT	1 cut(s)	1433
BsuRI	GGCC	3 cut(s)	1589, 1969, 2111
BsuTUI	ATCGAT	1 cut(s)	1433
BtgI	CCRYGG	2 cut(s)	89, 1784
BtgZI	GCGATG	1 cut(s)	397
BtrI	CACGTC	1 cut(s)	1813
BtsCI	GGATG	7 cut(s)	366, 532, 958, 1141, 1264, 1693, 1900
BtsI	GCAGTG	4 cut(s)	201, 1413, 1804, 2137
Cac8I	GCNNGC	8 cut(s)	364, 847, 941, 976, 1518, 1576, 1887, 2239
CaiI	CAGNNNCTG	3 cut(s)	452, 939, 974
CciI	TCATGA	2 cut(s)	292, 684
CfoI	GCGC	1 cut(s)	1797
Cfr10I	RCCGGY	2 cut(s)	1885, 2033
Cfr13I	GGNCC	7 cut(s)	220, 308, 708, 1587, 1934, 1967, 2245
ClaI	ATCGAT	1 cut(s)	1433
CseI	GACGC	1 cut(s)	2030
Csp6I	GTAC	4 cut(s)	691, 917, 1341, 1991
CspAI	ACCGGT	1 cut(s)	2033
CviQI	GTAC	4 cut(s)	691, 917, 1341, 1991
DpnI	GATC	8 cut(s)	60, 180, 888, 1035, 1251, 1676, 1871, 2354
DpnII	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
DraI	TTTAAA	1 cut(s)	1353
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DriI	GACNNNNNGTC	1 cut(s)	1293
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	2109
Eam1104I	CTCTTC	4 cut(s)	1272, 1641, 2139, 2159
Eam1105I	GACNNNNNGTC	1 cut(s)	1293
EarI	CTCTTC	4 cut(s)	1272, 1641, 2139, 2159
Eco130I	CCWWGG	4 cut(s)	89, 1075, 1773, 1929
Eco31I	GGTCTC	1 cut(s)	2141
Eco32I	GATATC	1 cut(s)	1085
Eco47I	GGWCC	5 cut(s)	220, 308, 708, 1934, 2245
Eco57I	CTGAAG	7 cut(s)	429, 1109, 1110, 1665, 1871, 2137, 2160
Eco88I	CYCGRG	1 cut(s)	1451
EcoNI	CCTNNNNNAGG	2 cut(s)	543, 2068
EcoO109I	RGGNCCY	4 cut(s)	308, 708, 1967, 2245
EcoRI	GAATTC	1 cut(s)	2003
EcoRV	GATATC	1 cut(s)	1085
EcoT14I	CCWWGG	4 cut(s)	89, 1075, 1773, 1929
EcoT22I	ATGCAT	2 cut(s)	368, 1915
ErhI	CCWWGG	4 cut(s)	89, 1075, 1773, 1929
FalI	AAGNNNNNCTT	2 cut(s)	2207, 2239
FaqI	GGGAC	3 cut(s)	28, 206, 1947
FauI	CCCGC	1 cut(s)	1583
FauNDI	CATATG	2 cut(s)	196, 1915
FbaI	TGATCA	2 cut(s)	1249, 1869
Fnu4HI	GCNGC	5 cut(s)	75, 944, 1104, 1539, 1542
FokI	GGATG	7 cut(s)	353, 539, 965, 1128, 1271, 1700, 1907
Fsp4HI	GCNGC	5 cut(s)	75, 944, 1104, 1539, 1542
FspBI	CTAG	6 cut(s)	833, 1160, 1496, 1506, 1655, 2204
GlaI	GCGC	1 cut(s)	1796
GluI	GCNGC	5 cut(s)	75, 944, 1104, 1539, 1542
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	1589, 1969, 2111
HapII	CCGG	3 cut(s)	237, 1886, 2034
HgaI	GACGC	1 cut(s)	2030
HhaI	GCGC	1 cut(s)	1797
Hin1I	GRCGYC	1 cut(s)	2041
Hin6I	GCGC	1 cut(s)	1795
HinP1I	GCGC	1 cut(s)	1795
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	3 cut(s)	237, 1886, 2034
HphI	GGTGA	3 cut(s)	407, 714, 743
Hpy166II	GTNNAC	4 cut(s)	333, 917, 1660, 2275
Hpy8I	GTNNAC	4 cut(s)	333, 917, 1660, 2275
HpyCH4III	ACNGT	4 cut(s)	1061, 1526, 1612, 2329
HpyCH4IV	ACGT	4 cut(s)	356, 1006, 1632, 1812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 606, 635
HpySE526I	ACGT	4 cut(s)	356, 1006, 1632, 1812
Hsp92I	GRCGYC	1 cut(s)	2041
HspAI	GCGC	1 cut(s)	1795
KroI	GCCGGC	1 cut(s)	1885
KroNI	GCCGGC	1 cut(s)	1887
Ksp22I	TGATCA	2 cut(s)	1249, 1869
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
LguI	GCTCTTC	2 cut(s)	1272, 2159
LmnI	GCTCC	2 cut(s)	244, 1769
Lsp1109I	GCAGC	5 cut(s)	86, 930, 1090, 1525, 1528
LweI	GCATC	8 cut(s)	331, 331, 375, 550, 926, 961, 1252, 1561
MaeI	CTAG	6 cut(s)	833, 1160, 1496, 1506, 1655, 2204
MaeII	ACGT	4 cut(s)	356, 1006, 1632, 1812
MaeIII	GTNAC	4 cut(s)	663, 1526, 1801, 2101
MalI	GATC	8 cut(s)	60, 180, 888, 1035, 1251, 1676, 1871, 2354
MboI	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
MfeI	CAATTG	1 cut(s)	1670
MflI	RGATCY	2 cut(s)	58, 1033
MhlI	GDGCHC	2 cut(s)	1754, 2277
MlsI	TGGCCA	1 cut(s)	2111
MluNI	TGGCCA	1 cut(s)	2111
MlyI	GAGTC	4 cut(s)	440, 993, 1282, 2005
MmeI	TCCRAC	3 cut(s)	842, 1615, 1809
Mox20I	TGGCCA	1 cut(s)	2111
Mph1103I	ATGCAT	2 cut(s)	368, 1915
MroNI	GCCGGC	1 cut(s)	1885
MroXI	GAANNNNTTC	2 cut(s)	164, 1155
MscI	TGGCCA	1 cut(s)	2111
MslI	CAYNNNNRTG	4 cut(s)	934, 1017, 1146, 2124
Msp20I	TGGCCA	1 cut(s)	2111
MspI	CCGG	3 cut(s)	237, 1886, 2034
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	1670
Mva1269I	GAATGC	3 cut(s)	266, 1699, 1778
MwoI	GCNNNNNNNGC	3 cut(s)	212, 606, 635
NaeI	GCCGGC	1 cut(s)	1887
NciI	CCSGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	89
NdeI	CATATG	2 cut(s)	196, 1915
NdeII	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
NgoMIV	GCCGGC	1 cut(s)	1885
NlaIV	GGNNCC	8 cut(s)	222, 246, 309, 709, 979, 1771, 1884, 1935
NmuCI	GTSAC	1 cut(s)	663
NsiI	ATGCAT	2 cut(s)	368, 1915
NspI	RCATGY	2 cut(s)	366, 2263
PaeI	GCATGC	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	1451
PagI	TCATGA	2 cut(s)	292, 684
PciI	ACATGT	1 cut(s)	2259
PciSI	GCTCTTC	2 cut(s)	1272, 2159
PcsI	WCGNNNNNNNCGW	1 cut(s)	1003
PctI	GAATGC	3 cut(s)	266, 1699, 1778
PdiI	GCCGGC	1 cut(s)	1887
PdmI	GAANNNNTTC	2 cut(s)	164, 1155
PfeI	GAWTC	7 cut(s)	509, 532, 654, 1151, 1706, 2075, 2301
PfoI	TCCNGGA	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	2033
PkrI	GCNGC	5 cut(s)	76, 945, 1105, 1540, 1543
PleI	GAGTC	4 cut(s)	439, 993, 1282, 2004
PpsI	GAGTC	4 cut(s)	439, 993, 1282, 2004
PpuMI	RGGWCCY	3 cut(s)	308, 708, 2245
PscI	ACATGT	1 cut(s)	2259
PshAI	GACNNNNGTC	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	1758
Psp5II	RGGWCCY	3 cut(s)	308, 708, 2245
PspFI	CCCAGC	1 cut(s)	12
PspN4I	GGNNCC	8 cut(s)	222, 246, 309, 709, 979, 1771, 1884, 1935
PspPI	GGNCC	7 cut(s)	220, 308, 708, 1587, 1934, 1967, 2245
PspPPI	RGGWCCY	3 cut(s)	308, 708, 2245
PspXI	VCTCGAGB	1 cut(s)	1451
PstI	CTGCAG	4 cut(s)	948, 1033, 2083, 2199
PstNI	CAGNNNCTG	3 cut(s)	452, 939, 974
PsuI	RGATCY	2 cut(s)	58, 1033
RsaI	GTAC	4 cut(s)	692, 918, 1342, 1992
RsaNI	GTAC	4 cut(s)	691, 917, 1341, 1991
RseI	CAYNNNNRTG	4 cut(s)	934, 1017, 1146, 2124
SapI	GCTCTTC	2 cut(s)	1272, 2159
SatI	GCNGC	5 cut(s)	75, 944, 1104, 1539, 1542
Sau3AI	GATC	8 cut(s)	58, 178, 886, 1033, 1249, 1674, 1869, 2352
Sau96I	GGNCC	7 cut(s)	220, 308, 708, 1587, 1934, 1967, 2245
SchI	GAGTC	4 cut(s)	440, 993, 1282, 2005
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	1754, 2277
SfaNI	GCATC	8 cut(s)	331, 331, 375, 550, 926, 961, 1252, 1561
SfcI	CTRYAG	4 cut(s)	944, 1029, 2079, 2195
Sfr274I	CTCGAG	1 cut(s)	1451
SgrAI	CRCCGGYG	1 cut(s)	2033
SinI	GGWCC	5 cut(s)	220, 308, 708, 1934, 2245
SlaI	CTCGAG	1 cut(s)	1451
SmiMI	CAYNNNNRTG	4 cut(s)	934, 1017, 1146, 2124
SmlI	CTYRAG	1 cut(s)	1451
SmoI	CTYRAG	1 cut(s)	1451
SpeI	ACTAGT	2 cut(s)	1654, 2203
SphI	GCATGC	1 cut(s)	366
SsiI	CCGC	1 cut(s)	1576
SspI	AATATT	3 cut(s)	391, 492, 1325
SspMI	CTAG	6 cut(s)	833, 1160, 1496, 1506, 1655, 2204
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	4 cut(s)	89, 1075, 1773, 1929
TaaI	ACNGT	4 cut(s)	1061, 1526, 1612, 2329
TaiI	ACGT	4 cut(s)	359, 1009, 1635, 1815
TaqII	GACCGA	1 cut(s)	1951
TatI	WGTACW	2 cut(s)	916, 1340
TfiI	GAWTC	7 cut(s)	509, 532, 654, 1151, 1706, 2075, 2301
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	5 cut(s)	74, 943, 1103, 1538, 1541
Tsp45I	GTSAC	1 cut(s)	663
TspGWI	ACGGA	2 cut(s)	1611, 2008
VneI	GTGCAC	1 cut(s)	2273
VpaK11BI	GGWCC	5 cut(s)	220, 308, 708, 1934, 2245
VspI	ATTAAT	1 cut(s)	1758
XagI	CCTNNNNNAGG	2 cut(s)	543, 2068
XapI	RAATTY	5 cut(s)	232, 436, 520, 1499, 2003
XbaI	TCTAGA	2 cut(s)	832, 1159
XceI	RCATGY	2 cut(s)	366, 2263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XhoI	CTCGAG	1 cut(s)	1451
XmnI	GAANNNNTTC	2 cut(s)	164, 1155
XspI	CTAG	6 cut(s)	833, 1160, 1496, 1506, 1655, 2204
Zsp2I	ATGCAT	2 cut(s)	368, 1915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.