Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

7089282 .. 7091973

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCATGGGCCAAAAGTGGAGTGCTTACAACTGTGGTTGATGATTTCACTAACGTTGGAGGTTCTGAAGAGGAGCTGGTAAACCTTATACAACTGATCGAGAAGTGGGATGTGAATGTGAATGTTGATTGTTGTTCCGAGCATGTTGAAATTATATTTTCAGCACTTAAGAACACAATTAATGAGCTTGGAGTCAAGACACGACAAGGACGCAGCGTGACAAGTGACATAATTGAGACGTGGTTGGATTTGCTCGAGTCTGGGCTGAAGGAAGCTGAGTGGTTGAGAAACAAGTCAGTGCCAACAATGGAGGAGTATATGACAAATGGATATATATCAATTGGCATTGGACCAATTGTCCTTCCAGCTCTCTATTTTGTTGGGCATGACCTTTCAGAGGAGGTTGTAGGAAGTTCCGAATTGCATGAGCTGTATAGCCTTATGAGCACCTGTGGACGTCTTCTGAATGATATCCAAGGCTTCAAGAGGGATTCCGCTGAAGGGAAGCTAAATGCTCTATCATTGACCATGATTCATGGGAACGGTGTCGTTACTGAAGAAGAGGCCATCAATGAGATAAATAGTATTATAAAAAATGATGGATTCAGTGCACATGAGGTGATGCAAAGTGTAAATGCAGTAACTGAGGAACCCATCATTCTCAGTGAATTGCGAGTAAAAAGCCCTACCTATGTGGGGGCCACCTCTATTAAAGAGAAGTCCAGATCTCCAGTGCTATCGTCTCTCCACATCAACCACCTAGGAGAGAGAAGGCCTAATGAATCTCTAGGTGTGAGGTTTTATCACAAAAGGCCTCAGTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

276

Amino Acids

30.5

Weight (kDa)

4.98

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AatII	GACGTC	1 cut(s)	460
AciI	CCGC	1 cut(s)	495
AclI	AACGTT	1 cut(s)	54
AcuI	CTGAAG	4 cut(s)	87, 287, 519, 576
AcyI	GRCGYC	1 cut(s)	457
AfiI	CCNNNNNNNGG	3 cut(s)	397, 501, 696
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	149, 484
AhdI	GACNNNNNGTC	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	240
AluBI	AGCT	6 cut(s)	76, 187, 275, 368, 430, 508
AluI	AGCT	6 cut(s)	76, 187, 275, 368, 430, 508
Alw21I	GWGCWC	2 cut(s)	449, 613
Alw26I	GTCTC	2 cut(s)	230, 747
Alw44I	GTGCAC	1 cut(s)	609
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	5 cut(s)	9, 564, 699, 773, 812
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	760
AspS9I	GGNCC	3 cut(s)	9, 350, 699
AsuHPI	GGTGA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	760
BaeGI	GKGCMC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	449, 613
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	575, 593, 662
BcoDI	GTCTC	2 cut(s)	230, 747
BfaI	CTAG	2 cut(s)	761, 788
BfrI	CTTAAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	1 cut(s)	214
BlnI	CCTAGG	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	3 cut(s)	9, 350, 699
BmiI	GGNNCC	2 cut(s)	651, 700
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	714
BsaBI	GATNNNNATC	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	475, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 501, 696
Bse1I	ACTGG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	475, 760
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	397, 501, 696
BseMII	CTCAG	3 cut(s)	267, 636, 676
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	3 cut(s)	86, 326, 413
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	5 cut(s)	11, 566, 701, 775, 814
BsiHKAI	GWGCWC	2 cut(s)	449, 613
BsiHKCI	CYCGRG	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	397, 501, 696
BsmAI	GTCTC	2 cut(s)	230, 747
BsmBI	CGTCTC	2 cut(s)	230, 747
BsnI	GGCC	5 cut(s)	11, 566, 701, 775, 814
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	449, 613
Bsp143I	GATC	2 cut(s)	96, 725
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	5 cut(s)	11, 566, 701, 775, 814
BspCNI	CTCAG	3 cut(s)	268, 637, 675
BspLI	GGNNCC	2 cut(s)	651, 700
BspTI	CTTAAG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	2 cut(s)	475, 760
BssMI	GATC	2 cut(s)	96, 725
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	2 cut(s)	475, 760
Bst4CI	ACNGT	2 cut(s)	34, 545
Bst6I	CTCTTC	2 cut(s)	63, 555
BstACI	GRCGYC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	276, 645, 662, 816
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	99, 728
BstMAI	GTCTC	2 cut(s)	230, 747
BstMBI	GATC	2 cut(s)	96, 725
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	725
BsuRI	GGCC	5 cut(s)	11, 566, 701, 775, 814
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	5 cut(s)	303, 613, 670, 738, 824
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	3 cut(s)	9, 350, 699
CseI	GACGC	1 cut(s)	219
CviAII	CATG	7 cut(s)	6, 143, 386, 425, 529, 536, 614
DdeI	CTNAG	4 cut(s)	276, 645, 662, 816
DpnI	GATC	2 cut(s)	98, 727
DpnII	GATC	2 cut(s)	96, 725
DriI	GACNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	63, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	356
EarI	CTCTTC	2 cut(s)	63, 555
Eco130I	CCWWGG	2 cut(s)	475, 760
Eco147I	AGGCCT	2 cut(s)	775, 814
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	87, 287, 519, 576
Eco88I	CYCGRG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	475, 760
ErhI	CCWWGG	2 cut(s)	475, 760
Esp3I	CGTCTC	2 cut(s)	230, 747
FaeI	CATG	7 cut(s)	9, 146, 389, 428, 532, 539, 617
FatI	CATG	7 cut(s)	5, 142, 385, 424, 528, 535, 613
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	761, 788
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	5 cut(s)	11, 566, 701, 775, 814
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	7 cut(s)	9, 146, 389, 428, 532, 539, 617
HinfI	GANTC	6 cut(s)	192, 257, 491, 532, 603, 782
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	3 cut(s)	82, 455, 611
Hpy188I	TCNGA	5 cut(s)	67, 139, 397, 418, 465
Hpy188III	TCNNGA	4 cut(s)	100, 196, 484, 723
Hpy8I	GTNNAC	3 cut(s)	82, 455, 611
HpyAV	CCTTC	4 cut(s)	262, 371, 494, 765
HpyCH4III	ACNGT	2 cut(s)	34, 545
HpyCH4IV	ACGT	3 cut(s)	54, 239, 457
HpyCH4V	TGCA	4 cut(s)	424, 611, 625, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	4 cut(s)	276, 645, 662, 816
HpySE526I	ACGT	3 cut(s)	54, 239, 457
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	7 cut(s)	9, 146, 389, 428, 532, 539, 617
Kzo9I	GATC	2 cut(s)	96, 725
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	62, 246, 378, 463, 736, 744
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	2 cut(s)	761, 788
MaeII	ACGT	3 cut(s)	54, 239, 457
MaeIII	GTNAC	4 cut(s)	217, 224, 550, 640
MalI	GATC	2 cut(s)	98, 727
MboI	GATC	2 cut(s)	96, 725
MboII	GAAGA	4 cut(s)	80, 452, 569, 572
MfeI	CAATTG	2 cut(s)	339, 354
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	2 cut(s)	449, 613
MluCI	AATT	8 cut(s)	150, 177, 231, 339, 354, 419, 668, 823
MlyI	GAGTC	2 cut(s)	201, 266
MmeI	TCCRAC	2 cut(s)	37, 225
MseI	TTAA	4 cut(s)	168, 180, 711, 826
MspA1I	CMGCKG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	167
MunI	CAATTG	2 cut(s)	339, 354
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	2 cut(s)	96, 725
NlaIII	CATG	7 cut(s)	9, 146, 389, 428, 532, 539, 617
NlaIV	GGNNCC	2 cut(s)	651, 700
NmuCI	GTSAC	2 cut(s)	217, 224
NspI	RCATGY	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	254
PceI	AGGCCT	2 cut(s)	775, 814
PfeI	GAWTC	4 cut(s)	491, 532, 603, 782
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	200, 265
PpsI	GAGTC	2 cut(s)	200, 265
PshBI	ATTAAT	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	590
Psp1406I	AACGTT	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	651, 700
PspPI	GGNCC	3 cut(s)	9, 350, 699
PspXI	VCTCGAGB	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	725
SaqAI	TTAA	4 cut(s)	168, 180, 711, 826
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	96, 725
Sau96I	GGNCC	3 cut(s)	9, 350, 699
SchI	GAGTC	2 cut(s)	201, 266
SduI	GDGCHC	2 cut(s)	449, 613
SfaNI	GCATC	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	167, 254
SmoI	CTYRAG	2 cut(s)	167, 254
Sse9I	AATT	8 cut(s)	150, 177, 231, 339, 354, 419, 668, 823
SseBI	AGGCCT	2 cut(s)	775, 814
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	761, 788
StuI	AGGCCT	2 cut(s)	775, 814
StyI	CCWWGG	2 cut(s)	475, 760
TaaI	ACNGT	2 cut(s)	34, 545
TaiI	ACGT	3 cut(s)	57, 242, 460
TaqI	TCGA	2 cut(s)	99, 255
TasI	AATT	8 cut(s)	150, 177, 231, 339, 354, 419, 668, 823
TfiI	GAWTC	4 cut(s)	491, 532, 603, 782
Tru1I	TTAA	4 cut(s)	168, 180, 711, 826
Tru9I	TTAA	4 cut(s)	168, 180, 711, 826
TscAI	CASTG	5 cut(s)	303, 613, 670, 738, 824
TseFI	GTSAC	2 cut(s)	217, 224
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	2 cut(s)	217, 224
TspDTI	ATGAA	2 cut(s)	524, 795
TspRI	CASTG	5 cut(s)	303, 613, 670, 738, 824
Vha464I	CTTAAG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	395
XceI	RCATGY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	254
XmaJI	CCTAGG	1 cut(s)	760
XspI	CTAG	2 cut(s)	761, 788
ZraI	GACGTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.