Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005664.1

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5891

Gene Structure 5891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2026 bp

gcctacaaacagatgctggctgcagggggatgaagatatatttgcagatgctggcacctgtgctatggcatttcgactcttacgtgttaatggatatgatgtctctgcagatcggttaaatcaattttcagaagaccatttctttgattcccttggaggatatctaagggacactgatgctgcattagaactgtttagggcatcggaagtcatcattcatccagatgaatcagttctagagaaacaaaattactggacaaggaatttcctaaaacaggaattttctaataatttaactcagcctcacagaatcaataagcatattggcctagaggtggttgatgctcttaagtttccttcctatgctactttgggtcggttatcgagcaggagggcaatgatatcttacaacaccagcagtacaaggattttaaaatcttcttatcgacttcctaaaactggcagtggaagacttcaatacgtgccaatcgatacatcgggaagaactcgagcatctttcaaggtagatgttcctcctcctcctcctcctcttttctctgtctttgagctgtttgttagtgatgtttccaccttgatgtcatatgaatcactgagagtgcaggttgtggaggttggctctttttggtgggttatcgagagcagattagacaagctaaaatttgccaggcagaagctggcttactgttatttcactgctgctggaacccttttccctcctgaactatcagatgctcgcatatcatgggccaaaaacggagtacttacaactgtggtcgatgatttctttgacgttggaggttccgaagaggaactagtaaaccttatacaattggttgagaagtgggatgtgaatccaagaaccgattcttgctccgagaatgttgaaatcgttttttcagcaattaagagcttagttagtgagattggcatcaatgcattcgcaaggcaagagcgcagtgtgacaaatcacgtcattgagatttggttggatttgctcaaagctatgctgaaggaagctaagtggttgataaacaagtcagcgccaacaatggaggaatacatggaaaatgcgtacgtctcatttgccttgggacctaatgtcctttcaaatctctgtttggtagggcctaagctctcagaggatgctgtacggagttcggaatactaccatctgtatagactaatgagcacttttgggcgtcttctcaatgatatgcaaagctataagagggaagctgcggaagggaagctaaatgctgtaacattggccatgattcatggcaatggtagtgttagcgaagaagaggccatcaatgagatgaagagcattatcaccagtaagaggagagaactgcaaagactagttttgcaggatgacaaggatagtgtagttccaagagcttgcaaggatcttttttggaacatgggcaatattttgcatctattttatgataggcacgatggatacaccgcgcatgacatgatgaaaactgtaaatgaagtaaccgaagaacccatcattctcaatgcaaagcaagcaagtgaatggcataaactcactctcttcactcgatcgacacctttgaaaattcaacggcgagttcttgctgaggttctaaacccgatcgttcacgtacatgcccggcgacgaagctccgcgtcaatcaaaatctccggcgatggaatcggaccgcttgtcaaaaatgctgtcgagaaggtgatggacgcatcagtctacttcaagaaaaaccaccgccgccaccttgaagatctcaactccaggagtccagaaccggcggccccaccccctgaaccggccggcaaaccaccgaaccggccaccggaagtagcaaaagtccctctgcccggttcaaagccttcctcacatcctcctgcagccatactcgactacctgcagcgtctccaccccagtaacccggaaccggaaatttcatcactggaaccggccaaaattccaccgaaccctccatcggaatcttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

674

Amino Acids

75.97

Weight (kDa)

6.56

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1752
Acc36I	ACCTGC	2 cut(s)	611, 1942
AccB1I	GGYRCC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	1756
AccII	CGCG	2 cut(s)	1494, 1680
AciI	CCGC	7 cut(s)	1260, 1492, 1678, 1713, 1775, 1778, 1818
AclWI	GGATC	1 cut(s)	1438
AcoI	YGGCCR	4 cut(s)	1288, 1837, 1857, 1987
AcsI	RAATTY	6 cut(s)	263, 279, 678, 1609, 1969, 1993
AcuI	CTGAAG	1 cut(s)	1050
AcyI	GRCGYC	1 cut(s)	1220
AfaI	GTAC	5 cut(s)	422, 781, 1095, 1171, 1657
AfiI	CCNNNNNNNGG	9 cut(s)	275, 335, 459, 1363, 1835, 1862, 1887, 1964, 2012
AflII	CTTAAG	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	9 cut(s)	477, 521, 906, 1129, 1607, 1614, 1763, 1788, 1894
AhdI	GACNNNNNGTC	2 cut(s)	1119, 1716
AhlI	ACTAGT	2 cut(s)	833, 1382
AjiI	CACGTC	1 cut(s)	992
AjnI	CCWGG	2 cut(s)	684, 1800
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
Alw21I	GWGCWC	1 cut(s)	1212
Alw26I	GTCTC	3 cut(s)	107, 1103, 1947
AlwI	GGATC	1 cut(s)	1438
AlwNI	CAGNNNCTG	3 cut(s)	16, 51, 695
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	9 cut(s)	326, 766, 1146, 1288, 1327, 1819, 1837, 1857, 1987
ApeKI	GCWGC	6 cut(s)	20, 180, 717, 1257, 1917, 1937
ApoI	RAATTY	6 cut(s)	263, 279, 678, 1609, 1969, 1993
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 1714, 1746
Asp700I	GAANNNNTTC	2 cut(s)	232, 884
AspLEI	GCGC	3 cut(s)	976, 1064, 1496
AspS9I	GGNCC	5 cut(s)	766, 1113, 1146, 1710, 1820
AsuC2I	CCSGG	3 cut(s)	1664, 1888, 1959
AsuHPI	GGTGA	2 cut(s)	1346, 1751
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	2 cut(s)	1113, 1710
BalI	TGGCCA	1 cut(s)	1290
BanI	GGYRCC	1 cut(s)	54
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbsI	GAAGAC	3 cut(s)	139, 476, 1215
Bbv12I	GWGCWC	1 cut(s)	1212
BbvCI	CCTCAGC	1 cut(s)	1630
BbvI	GCAGC	6 cut(s)	7, 167, 704, 1244, 1929, 1949
BccI	CCATC	7 cut(s)	1198, 1338, 1476, 1545, 1695, 1736, 2018
BceAI	ACGGC	1 cut(s)	1632
BciT130I	CCWGG	2 cut(s)	686, 1802
BciVI	GTATCC	1 cut(s)	1479
BcnI	CCSGG	3 cut(s)	1664, 1888, 1959
BcoDI	GTCTC	3 cut(s)	107, 1103, 1947
BcuI	ACTAGT	2 cut(s)	833, 1382
BfaI	CTAG	4 cut(s)	237, 330, 834, 1383
BfmI	CTRYAG	4 cut(s)	21, 106, 1915, 1935
BfoI	RGCGCY	1 cut(s)	1065
BfrI	CTTAAG	1 cut(s)	348
BfuAI	ACCTGC	2 cut(s)	611, 1942
BfuI	GTATCC	1 cut(s)	1479
BglII	AGATCT	1 cut(s)	1790
BisI	GCNGC	8 cut(s)	21, 181, 718, 1258, 1778, 1819, 1918, 1938
BlsI	GCNGC	8 cut(s)	22, 182, 719, 1259, 1779, 1820, 1919, 1939
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	5 cut(s)	686, 1664, 1802, 1888, 1959
Bme18I	GGWCC	2 cut(s)	1113, 1710
BmeRI	GACNNNNNGTC	2 cut(s)	1119, 1716
BmeT110I	CYCGRG	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	5 cut(s)	766, 1113, 1146, 1710, 1820
BmiI	GGNNCC	7 cut(s)	56, 725, 821, 1114, 1822, 1963, 1984
BmrFI	CCNGG	5 cut(s)	686, 1664, 1802, 1888, 1959
BmrI	ACTGGG	1 cut(s)	1945
BmuI	ACTGGG	1 cut(s)	1945
BpiI	GAAGAC	3 cut(s)	139, 476, 1215
BplI	GAGNNNNNCTC	2 cut(s)	621, 653
BpmI	CTGGAG	1 cut(s)	1784
Bpu10I	CCTNAGC	2 cut(s)	1150, 1630
BpuMI	CCSGG	3 cut(s)	1664, 1888, 1959
Bsa29I	ATCGAT	1 cut(s)	490
BsaAI	YACGTR	3 cut(s)	84, 482, 1655
BsaBI	GATNNNNATC	2 cut(s)	871, 948
BsaHI	GRCGYC	1 cut(s)	1220
BsaJI	CCNNGG	2 cut(s)	152, 1108
BsaWI	WCCGGW	2 cut(s)	1862, 1964
Bsc4I	CCNNNNNNNGG	9 cut(s)	275, 335, 459, 1363, 1835, 1862, 1887, 1964, 2012
Bse118I	RCCGGY	5 cut(s)	1814, 1835, 1839, 1855, 1985
Bse1I	ACTGG	5 cut(s)	258, 464, 1357, 1951, 1984
Bse3DI	GCAATG	2 cut(s)	403, 1310
Bse8I	GATNNNNATC	2 cut(s)	871, 948
BseBI	CCWGG	2 cut(s)	686, 1802
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	152, 1108
BseGI	GGATG	6 cut(s)	35, 218, 872, 1169, 1400, 1907
BseJI	GATNNNNATC	2 cut(s)	871, 948
BseLI	CCNNNNNNNGG	9 cut(s)	275, 335, 459, 1363, 1835, 1862, 1887, 1964, 2012
BseMI	GCAATG	2 cut(s)	403, 1310
BseMII	CTCAG	4 cut(s)	312, 603, 1171, 1621
BseNI	ACTGG	5 cut(s)	258, 464, 1357, 1951, 1984
BseRI	GAGGAG	6 cut(s)	526, 529, 532, 535, 538, 1379
BseX3I	CGGCCG	1 cut(s)	1837
BseXI	GCAGC	6 cut(s)	7, 167, 704, 1244, 1929, 1949
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	2 cut(s)	1494, 1680
Bsh1285I	CGRYCG	3 cut(s)	1596, 1648, 1840
BshFI	GGCC	9 cut(s)	328, 768, 1148, 1290, 1329, 1821, 1839, 1859, 1989
BshNI	GGYRCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	490
BsiEI	CGRYCG	3 cut(s)	1596, 1648, 1840
BsiHKAI	GWGCWC	1 cut(s)	1212
BsiHKCI	CYCGRG	1 cut(s)	508
BsiWI	CGTACG	1 cut(s)	1093
BslFI	GGGAC	3 cut(s)	183, 1126, 1863
BslI	CCNNNNNNNGG	9 cut(s)	275, 335, 459, 1363, 1835, 1862, 1887, 1964, 2012
BsmAI	GTCTC	3 cut(s)	107, 1103, 1947
BsmBI	CGTCTC	2 cut(s)	1103, 1947
BsmFI	GGGAC	3 cut(s)	183, 1126, 1863
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	9 cut(s)	328, 768, 1148, 1290, 1329, 1821, 1839, 1859, 1989
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp143I	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
BspACI	CCGC	7 cut(s)	1260, 1492, 1678, 1713, 1775, 1778, 1818
BspANI	GGCC	9 cut(s)	328, 768, 1148, 1290, 1329, 1821, 1839, 1859, 1989
BspCNI	CTCAG	4 cut(s)	311, 604, 1170, 1622
BspDI	ATCGAT	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	1494, 1680
BspLI	GGNNCC	7 cut(s)	56, 725, 821, 1114, 1822, 1963, 1984
BspMAI	CTGCAG	4 cut(s)	25, 110, 1919, 1939
BspMI	ACCTGC	2 cut(s)	611, 1942
BspPI	GGATC	1 cut(s)	1438
BspQI	GCTCTTC	1 cut(s)	1338
BspT107I	GGYRCC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	403, 1310
BsrFI	RCCGGY	5 cut(s)	1814, 1835, 1839, 1855, 1985
BsrI	ACTGG	5 cut(s)	258, 464, 1357, 1951, 1984
BssAI	RCCGGY	5 cut(s)	1814, 1835, 1839, 1855, 1985
BssECI	CCNNGG	2 cut(s)	152, 1108
BssMI	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
BssNI	GRCGYC	1 cut(s)	1220
BssT1I	CCWWGG	2 cut(s)	152, 1108
Bst2UI	CCWGG	2 cut(s)	686, 1802
Bst4CI	ACNGT	4 cut(s)	193, 705, 791, 1514
Bst6I	CTCTTC	4 cut(s)	820, 1318, 1338, 1590
BstACI	GRCGYC	1 cut(s)	1220
BstAFI	CTTAAG	1 cut(s)	348
BstBAI	YACGTR	3 cut(s)	84, 482, 1655
BstC8I	GCNNGC	7 cut(s)	18, 53, 697, 755, 1424, 1558, 1841
BstDEI	CTNAG	8 cut(s)	165, 298, 612, 932, 1039, 1150, 1157, 1630
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	6 cut(s)	35, 218, 872, 1169, 1400, 1907
BstFNI	CGCG	2 cut(s)	1494, 1680
BstH2I	RGCGCY	1 cut(s)	1065
BstHHI	GCGC	3 cut(s)	976, 1064, 1496
BstKTI	GATC	5 cut(s)	113, 1433, 1596, 1648, 1793
BstMAI	GTCTC	3 cut(s)	107, 1103, 1947
BstMBI	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
BstMCI	CGRYCG	3 cut(s)	1596, 1648, 1840
BstMWI	GCNNNNNNNGC	1 cut(s)	1557
BstNI	CCWGG	2 cut(s)	686, 1802
BstNSI	RCATGY	1 cut(s)	1662
BstSCI	CCNGG	5 cut(s)	684, 1662, 1800, 1886, 1957
BstSFI	CTRYAG	4 cut(s)	21, 106, 1915, 1935
BstUI	CGCG	2 cut(s)	1494, 1680
BstV1I	GCAGC	6 cut(s)	7, 167, 704, 1244, 1929, 1949
BstV2I	GAAGAC	3 cut(s)	139, 476, 1215
BstX2I	RGATCY	2 cut(s)	1430, 1790
BstYI	RGATCY	2 cut(s)	1430, 1790
BstZI	CGGCCG	1 cut(s)	1837
Bsu15I	ATCGAT	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	1479
BsuRI	GGCC	9 cut(s)	328, 768, 1148, 1290, 1329, 1821, 1839, 1859, 1989
BsuTUI	ATCGAT	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	1714
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	6 cut(s)	35, 218, 872, 1169, 1400, 1907
BtsI	GCAGTG	3 cut(s)	470, 712, 983
BtsIMutI	CAGTG	6 cut(s)	172, 470, 609, 712, 983, 1977
BveI	ACCTGC	2 cut(s)	611, 1942
Cac8I	GCNNGC	7 cut(s)	18, 53, 697, 755, 1424, 1558, 1841
CaiI	CAGNNNCTG	3 cut(s)	16, 51, 695
CfoI	GCGC	3 cut(s)	976, 1064, 1496
Cfr10I	RCCGGY	5 cut(s)	1814, 1835, 1839, 1855, 1985
Cfr13I	GGNCC	5 cut(s)	766, 1113, 1146, 1710, 1820
ClaI	ATCGAT	1 cut(s)	490
CpoI	CGGWCCG	1 cut(s)	1710
CseI	GACGC	4 cut(s)	1209, 1669, 1755, 1929
Csp6I	GTAC	5 cut(s)	421, 780, 1094, 1170, 1656
CspI	CGGWCCG	1 cut(s)	1710
CviAII	CATG	8 cut(s)	763, 1082, 1292, 1299, 1445, 1497, 1502, 1659
CviQI	GTAC	5 cut(s)	421, 780, 1094, 1170, 1656
DdeI	CTNAG	8 cut(s)	165, 298, 612, 932, 1039, 1150, 1157, 1630
DpnI	GATC	5 cut(s)	112, 1432, 1595, 1647, 1792
DpnII	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
DraI	TTTAAA	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	1752
DriI	GACNNNNNGTC	2 cut(s)	1119, 1716
DseDI	GACNNNNNNGTC	1 cut(s)	1752
EaeI	YGGCCR	4 cut(s)	1288, 1837, 1857, 1987
EagI	CGGCCG	1 cut(s)	1837
Eam1104I	CTCTTC	4 cut(s)	820, 1318, 1338, 1590
Eam1105I	GACNNNNNGTC	2 cut(s)	1119, 1716
EarI	CTCTTC	4 cut(s)	820, 1318, 1338, 1590
EclXI	CGGCCG	1 cut(s)	1837
Eco130I	CCWWGG	2 cut(s)	152, 1108
Eco32I	GATATC	2 cut(s)	162, 403
Eco47I	GGWCC	2 cut(s)	1113, 1710
Eco52I	CGGCCG	1 cut(s)	1837
Eco57I	CTGAAG	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	1113, 1146
EcoRII	CCWGG	2 cut(s)	684, 1800
EcoRV	GATATC	2 cut(s)	162, 403
EcoT14I	CCWWGG	2 cut(s)	152, 1108
EcoT22I	ATGCAT	1 cut(s)	959
ErhI	CCWWGG	2 cut(s)	152, 1108
Esp3I	CGTCTC	2 cut(s)	1103, 1947
FaeI	CATG	8 cut(s)	766, 1085, 1295, 1302, 1448, 1500, 1505, 1662
FaqI	GGGAC	3 cut(s)	183, 1126, 1863
FatI	CATG	8 cut(s)	762, 1081, 1291, 1298, 1444, 1496, 1501, 1658
FauNDI	CATATG	1 cut(s)	602
FblI	GTMKAC	1 cut(s)	1756
Fnu4HI	GCNGC	8 cut(s)	21, 181, 718, 1258, 1778, 1819, 1918, 1938
FokI	GGATG	6 cut(s)	42, 205, 879, 1176, 1407, 1894
Fsp4HI	GCNGC	8 cut(s)	21, 181, 718, 1258, 1778, 1819, 1918, 1938
FspBI	CTAG	4 cut(s)	237, 330, 834, 1383
GlaI	GCGC	3 cut(s)	975, 1063, 1495
GluI	GCNGC	8 cut(s)	21, 181, 718, 1258, 1778, 1819, 1918, 1938
GsuI	CTGGAG	1 cut(s)	1784
HaeII	RGCGCY	1 cut(s)	1065
HaeIII	GGCC	9 cut(s)	328, 768, 1148, 1290, 1329, 1821, 1839, 1859, 1989
HgaI	GACGC	4 cut(s)	1209, 1669, 1755, 1929
HhaI	GCGC	3 cut(s)	976, 1064, 1496
Hin1I	GRCGYC	1 cut(s)	1220
Hin1II	CATG	8 cut(s)	766, 1085, 1295, 1302, 1448, 1500, 1505, 1662
Hin6I	GCGC	3 cut(s)	974, 1062, 1494
HinP1I	GCGC	3 cut(s)	974, 1062, 1494
HphI	GGTGA	2 cut(s)	1346, 1751
Hpy166II	GTNNAC	3 cut(s)	839, 1652, 1757
Hpy188I	TCNGA	9 cut(s)	131, 206, 749, 824, 896, 1160, 1181, 1710, 2015
Hpy188III	TCNNGA	8 cut(s)	222, 237, 499, 656, 738, 1733, 1763, 1809
Hpy8I	GTNNAC	3 cut(s)	839, 1652, 1757
Hpy99I	CGWCG	1 cut(s)	1672
HpyAV	CCTTC	5 cut(s)	367, 1025, 1257, 1730, 1909
HpyCH4III	ACNGT	4 cut(s)	193, 705, 791, 1514
HpyCH4IV	ACGT	6 cut(s)	83, 481, 811, 991, 1096, 1654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1557
HpyF3I	CTNAG	8 cut(s)	165, 298, 612, 932, 1039, 1150, 1157, 1630
HpySE526I	ACGT	6 cut(s)	83, 481, 811, 991, 1096, 1654
Hsp92I	GRCGYC	1 cut(s)	1220
Hsp92II	CATG	8 cut(s)	766, 1085, 1295, 1302, 1448, 1500, 1505, 1662
HspAI	GCGC	3 cut(s)	974, 1062, 1494
KroI	GCCGGC	1 cut(s)	1839
KroNI	GCCGGC	1 cut(s)	1841
Kzo9I	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
LguI	GCTCTTC	1 cut(s)	1338
LmnI	GCTCC	2 cut(s)	897, 1680
Lsp1109I	GCAGC	6 cut(s)	7, 167, 704, 1244, 1929, 1949
MaeI	CTAG	4 cut(s)	237, 330, 834, 1383
MaeII	ACGT	6 cut(s)	83, 481, 811, 991, 1096, 1654
MaeIII	GTNAC	4 cut(s)	980, 1280, 1523, 1953
MalI	GATC	5 cut(s)	112, 1432, 1595, 1647, 1792
MboI	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	1430, 1790
MhlI	GDGCHC	1 cut(s)	1212
MlsI	TGGCCA	1 cut(s)	1290
MluNI	TGGCCA	1 cut(s)	1290
MlyI	GAGTC	2 cut(s)	70, 1814
MmeI	TCCRAC	2 cut(s)	794, 988
Mox20I	TGGCCA	1 cut(s)	1290
Mph1103I	ATGCAT	1 cut(s)	959
MroNI	GCCGGC	1 cut(s)	1839
MroXI	GAANNNNTTC	2 cut(s)	232, 884
MscI	TGGCCA	1 cut(s)	1290
MseI	TTAA	6 cut(s)	88, 117, 294, 349, 432, 925
MslI	CAYNNNNRTG	4 cut(s)	223, 594, 1303, 1657
Msp20I	TGGCCA	1 cut(s)	1290
MspCI	CTTAAG	1 cut(s)	348
MspR9I	CCNGG	5 cut(s)	686, 1664, 1802, 1888, 1959
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	2 cut(s)	686, 1802
MvnI	CGCG	2 cut(s)	1494, 1680
MwoI	GCNNNNNNNGC	1 cut(s)	1557
NaeI	GCCGGC	1 cut(s)	1841
NciI	CCSGG	3 cut(s)	1664, 1888, 1959
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
NgoMIV	GCCGGC	1 cut(s)	1839
NlaIII	CATG	8 cut(s)	766, 1085, 1295, 1302, 1448, 1500, 1505, 1662
NlaIV	GGNNCC	7 cut(s)	56, 725, 821, 1114, 1822, 1963, 1984
NmuCI	GTSAC	1 cut(s)	980
NsiI	ATGCAT	1 cut(s)	959
NspI	RCATGY	1 cut(s)	1662
PaeR7I	CTCGAG	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	1338
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 487
PctI	GAATGC	1 cut(s)	957
PdiI	GCCGGC	1 cut(s)	1841
PdmI	GAANNNNTTC	2 cut(s)	232, 884
PfeI	GAWTC	9 cut(s)	147, 228, 310, 606, 872, 885, 1295, 1705, 2016
Pfl23II	CGTACG	1 cut(s)	1093
PfoI	TCCNGGA	1 cut(s)	1800
PkrI	GCNGC	8 cut(s)	22, 182, 719, 1259, 1779, 1820, 1919, 1939
Ple19I	CGATCG	2 cut(s)	1596, 1648
PleI	GAGTC	2 cut(s)	70, 1813
PpsI	GAGTC	2 cut(s)	70, 1813
Ppu21I	YACGTR	3 cut(s)	84, 482, 1655
PpuMI	RGGWCCY	1 cut(s)	1113
Psp5II	RGGWCCY	1 cut(s)	1113
Psp6I	CCWGG	2 cut(s)	684, 1800
PspGI	CCWGG	2 cut(s)	684, 1800
PspLI	CGTACG	1 cut(s)	1093
PspN4I	GGNNCC	7 cut(s)	56, 725, 821, 1114, 1822, 1963, 1984
PspPI	GGNCC	5 cut(s)	766, 1113, 1146, 1710, 1820
PspPPI	RGGWCCY	1 cut(s)	1113
PspXI	VCTCGAGB	1 cut(s)	508
PstI	CTGCAG	4 cut(s)	25, 110, 1919, 1939
PstNI	CAGNNNCTG	3 cut(s)	16, 51, 695
PsuI	RGATCY	2 cut(s)	1430, 1790
PvuI	CGATCG	2 cut(s)	1596, 1648
RsaI	GTAC	5 cut(s)	422, 781, 1095, 1171, 1657
RsaNI	GTAC	5 cut(s)	421, 780, 1094, 1170, 1656
RseI	CAYNNNNRTG	4 cut(s)	223, 594, 1303, 1657
Rsr2I	CGGWCCG	1 cut(s)	1710
RsrII	CGGWCCG	1 cut(s)	1710
SapI	GCTCTTC	1 cut(s)	1338
SaqAI	TTAA	6 cut(s)	88, 117, 294, 349, 432, 925
SatI	GCNGC	8 cut(s)	21, 181, 718, 1258, 1778, 1819, 1918, 1938
Sau3AI	GATC	5 cut(s)	110, 1430, 1593, 1645, 1790
Sau96I	GGNCC	5 cut(s)	766, 1113, 1146, 1710, 1820
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	2 cut(s)	70, 1814
ScrFI	CCNGG	5 cut(s)	686, 1664, 1802, 1888, 1959
SduI	GDGCHC	1 cut(s)	1212
SfcI	CTRYAG	4 cut(s)	21, 106, 1915, 1935
Sfr274I	CTCGAG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	1113, 1710
SlaI	CTCGAG	1 cut(s)	508
SmiMI	CAYNNNNRTG	4 cut(s)	223, 594, 1303, 1657
SmlI	CTYRAG	2 cut(s)	348, 508
SmoI	CTYRAG	2 cut(s)	348, 508
SpeI	ACTAGT	2 cut(s)	833, 1382
SsiI	CCGC	7 cut(s)	1260, 1492, 1678, 1713, 1775, 1778, 1818
SspI	AATATT	1 cut(s)	1454
SspMI	CTAG	4 cut(s)	237, 330, 834, 1383
StyD4I	CCNGG	5 cut(s)	684, 1662, 1800, 1886, 1957
StyI	CCWWGG	2 cut(s)	152, 1108
TaaI	ACNGT	4 cut(s)	193, 705, 791, 1514
TaiI	ACGT	6 cut(s)	86, 484, 814, 994, 1099, 1657
TatI	WGTACW	2 cut(s)	420, 779
TauI	GCSGC	2 cut(s)	1780, 1821
TfiI	GAWTC	9 cut(s)	147, 228, 310, 606, 872, 885, 1295, 1705, 2016
Tru1I	TTAA	6 cut(s)	88, 117, 294, 349, 432, 925
Tru9I	TTAA	6 cut(s)	88, 117, 294, 349, 432, 925
TscAI	CASTG	6 cut(s)	179, 470, 616, 719, 983, 1984
TseFI	GTSAC	1 cut(s)	980
TseI	GCWGC	6 cut(s)	20, 180, 717, 1257, 1917, 1937
Tsp45I	GTSAC	1 cut(s)	980
TspDTI	ATGAA	9 cut(s)	46, 207, 241, 619, 1287, 1356, 1521, 1534, 1963
TspGWI	ACGGA	2 cut(s)	790, 1187
TspRI	CASTG	6 cut(s)	179, 470, 616, 719, 983, 1984
Vha464I	CTTAAG	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	1113, 1710
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	6 cut(s)	263, 279, 678, 1609, 1969, 1993
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	1 cut(s)	1662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	1756
XmnI	GAANNNNTTC	2 cut(s)	232, 884
XspI	CTAG	4 cut(s)	237, 330, 834, 1383
ZrmI	AGTACT	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.