FvH4_3g28521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003465
Physical Location & Seq
Forward (+)
21529089 .. 21531268
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28521.t1

Sequence Viewer

Length: 246 bp
ATGAGAGAGACTCTTGTGCCCTTGCTCAATTTTATCCACATTCAAGTTGTCTTCTTCCAGGGCCATCACGTAGTGAGAATGAACTTGGCCAGGAGATCAAATGACCAATCTGAACAATGCTGTGGGAAAAGGCGTCATTTTAACTTTCATGGTGCTGCAAAGGTGACCAGAGTGACCAGCACACGAATGATGTTGTCTCTTTCAGGAGACATAACAACTGCAGAACGCAGCAGTAAACAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.31

Weight (kDa)

11.19

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 133
AdeI CACNNNGTG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 2 cut(s) 57, 89
Alw26I GTCTC 3 cut(s) 2, 201, 201
AoxI GGCC 2 cut(s) 61, 87
ApeKI GCWGC 2 cut(s) 155, 228
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 142, 240
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 59, 91
BcoDI GTCTC 3 cut(s) 2, 201, 201
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 156, 229
BlsI GCNGC 2 cut(s) 157, 230
Bme1390I CCNGG 2 cut(s) 59, 91
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 59, 91
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 58
BseBI CCWGG 2 cut(s) 59, 91
BseDI CCNNGG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 2 cut(s) 142, 240
BshFI GGCC 2 cut(s) 63, 89
BsmAI GTCTC 3 cut(s) 2, 201, 201
BsnI GGCC 2 cut(s) 63, 89
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 95
BspANI GGCC 2 cut(s) 63, 89
BspMAI CTGCAG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 95
BssNI GRCGYC 1 cut(s) 133
Bst2UI CCWGG 2 cut(s) 59, 91
BstACI GRCGYC 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 163
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 3 cut(s) 2, 201, 201
BstMBI GATC 1 cut(s) 95
BstNI CCWGG 2 cut(s) 59, 91
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 57, 89
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 142, 240
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 63, 89
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 122
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 63, 89
CviKI_1 RGCY 2 cut(s) 63, 89
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraIII CACNNNGTG 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 57, 89
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 150, 212, 244
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 156, 229
Fsp4HI GCNGC 2 cut(s) 156, 229
GluI GCNGC 2 cut(s) 156, 229
HaeIII GGCC 2 cut(s) 63, 89
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 10
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 158, 221
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 44, 71, 76, 103, 181, 189, 190, 224
Lsp1109I GCAGC 2 cut(s) 142, 240
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 163, 172
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 2 cut(s) 43, 46
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 4
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 59, 91
MvaI CCWGG 2 cut(s) 59, 91
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 163, 172
PkrI GCNGC 2 cut(s) 157, 230
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 57, 89
PspEI GGTNACC 1 cut(s) 163
PspGI CCWGG 2 cut(s) 57, 89
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 156, 229
Sau3AI GATC 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 59, 91
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 72, 165, 243
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 57, 89
TaiI ACGT 1 cut(s) 72
TasI AATT 1 cut(s) 28
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 2 cut(s) 163, 172
TseI GCWGC 2 cut(s) 155, 228
Tsp45I GTSAC 2 cut(s) 163, 172
TspDTI ATGAA 2 cut(s) 95, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.