Rh7AG402200

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003465
Physical Location & Seq
Forward (+)
53051240 .. 53070425
19186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG402200.1

Sequence Viewer

Length: 255 bp
ATGAGTAGATTCGTGTCATACCATCAGCATGAGCTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGCAGAACAGTTCTGGTTTTCGTTTGTTTTGTTCTCGGTGAAAACATTGAGTGAGAAGAGTTCTGATAATTCACAAATTGAGAGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

4.65

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 112
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 5 cut(s) 34, 86, 94, 137, 249
AluI AGCT 5 cut(s) 34, 86, 94, 137, 249
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 214
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 74
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 72
CviAII CATG 2 cut(s) 29, 113
CviJI RGCY 5 cut(s) 34, 86, 94, 137, 249
CviKI_1 RGCY 5 cut(s) 34, 86, 94, 137, 249
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 32, 116
FaiI YATR 3 cut(s) 19, 30, 114
FatI CATG 2 cut(s) 28, 112
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 32, 116
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 143, 229
HpyCH4III ACNGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 32, 116
LpnPI CCDG 4 cut(s) 59, 86, 163, 168
Lsp1109I GCAGC 1 cut(s) 236
MabI ACCWGGT 1 cut(s) 72
MboII GAAGA 3 cut(s) 53, 170, 232
MluCI AATT 4 cut(s) 127, 161, 232, 240
MmeI TCCRAC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
NlaIII CATG 2 cut(s) 32, 116
NspI RCATGY 1 cut(s) 116
PciI ACATGT 1 cut(s) 112
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 251
PscI ACATGT 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 74
SetI ASST 6 cut(s) 36, 75, 88, 96, 139, 251
SexAI ACCWGGT 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 4 cut(s) 127, 161, 232, 240
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 174
TasI AATT 4 cut(s) 127, 161, 232, 240
TfiI GAWTC 1 cut(s) 9
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.