Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003465

Physical Location & Seq

Genomic Coordinates Reverse (-)

35912670 .. 35913937

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG236000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCTTTTGATTTCGGGTTCTTCACTTTTGATTTCAGGTGTTGAGTTCGGGCTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGGCAAACAAGGAAGCAGCTGATGAATGTTCTGTTTTCGTTGGGAATGTGAGTAAATTTCAATTTGTTTTGACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203

Pfam Domains

Protein Families

DUF3452 RB_A RB_B Rb_C

Protein Analysis

82

Amino Acids

8.64

Weight (kDa)

4.44

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28521
malus_domestica	MD05G1190300.v1.1
pyrus_communis	pycom05g17150 pycom05g17590
rosa_roxburghii	Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130
rosa_rugosa	Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000
rosa_samantha	Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	145, 224
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	104, 112, 155, 188
AluI	AGCT	4 cut(s)	104, 112, 155, 188
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	145, 224
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	90
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	52, 104, 112, 155, 188
CviKI_1	RGCY	5 cut(s)	52, 104, 112, 155, 188
DdeI	CTNAG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	134
FaiI	YATR	1 cut(s)	132
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	21, 77, 104
Lsp1109I	GCAGC	1 cut(s)	197
MabI	ACCWGGT	1 cut(s)	90
MboII	GAAGA	2 cut(s)	12, 71
MluCI	AATT	3 cut(s)	145, 224, 230
MmeI	TCCRAC	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NlaIII	CATG	1 cut(s)	134
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	187
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	188
SatI	GCNGC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	40, 93, 106, 114, 157, 190, 245
SexAI	ACCWGGT	1 cut(s)	90
Sse9I	AATT	3 cut(s)	145, 224, 230
StyD4I	CCNGG	1 cut(s)	90
TasI	AATT	3 cut(s)	145, 224, 230
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	145, 224
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.