Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 193, 239 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AhlI | ACTAGT | 1 cut(s) | 64 |
| AjnI | CCWGG | 1 cut(s) | 138 |
| AluBI | AGCT | 4 cut(s) | 152, 160, 203, 295 |
| AluI | AGCT | 4 cut(s) | 152, 160, 203, 295 |
| AoxI | GGCC | 2 cut(s) | 315, 319 |
| ApoI | RAATTY | 2 cut(s) | 193, 239 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 320 |
| BciT130I | CCWGG | 1 cut(s) | 140 |
| BcuI | ACTAGT | 1 cut(s) | 64 |
| BfaI | CTAG | 1 cut(s) | 65 |
| Bme1390I | CCNGG | 1 cut(s) | 140 |
| BmgT120I | GGNCC | 1 cut(s) | 320 |
| BmrFI | CCNGG | 1 cut(s) | 140 |
| Bse118I | RCCGGY | 1 cut(s) | 317 |
| BseBI | CCWGG | 1 cut(s) | 140 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BshFI | GGCC | 2 cut(s) | 317, 321 |
| BsiSI | CCGG | 1 cut(s) | 318 |
| BsnI | GGCC | 2 cut(s) | 317, 321 |
| BspANI | GGCC | 2 cut(s) | 317, 321 |
| BspHI | TCATGA | 1 cut(s) | 235 |
| BsrFI | RCCGGY | 1 cut(s) | 317 |
| BssAI | RCCGGY | 1 cut(s) | 317 |
| Bst2UI | CCWGG | 1 cut(s) | 140 |
| Bst4CI | ACNGT | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 1 cut(s) | 319 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstNI | CCWGG | 1 cut(s) | 140 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 138 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 277 |
| BsuRI | GGCC | 2 cut(s) | 317, 321 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 1 cut(s) | 319 |
| CciI | TCATGA | 1 cut(s) | 235 |
| Cfr10I | RCCGGY | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 1 cut(s) | 320 |
| CsiI | ACCWGGT | 1 cut(s) | 138 |
| CviAII | CATG | 2 cut(s) | 179, 236 |
| CviJI | RGCY | 7 cut(s) | 100, 152, 160, 203, 295, 317, 321 |
| CviKI_1 | RGCY | 7 cut(s) | 100, 152, 160, 203, 295, 317, 321 |
| DraI | TTTAAA | 1 cut(s) | 52 |
| EcoRI | GAATTC | 1 cut(s) | 239 |
| EcoRII | CCWGG | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 182, 239 |
| FaiI | YATR | 6 cut(s) | 14, 180, 224, 237, 342, 375 |
| FatI | CATG | 2 cut(s) | 178, 235 |
| FokI | GGATG | 1 cut(s) | 143 |
| FseI | GGCCGGCC | 1 cut(s) | 321 |
| FspBI | CTAG | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 317, 321 |
| HapII | CCGG | 1 cut(s) | 318 |
| Hin1II | CATG | 2 cut(s) | 182, 239 |
| HinfI | GANTC | 1 cut(s) | 368 |
| HpaII | CCGG | 1 cut(s) | 318 |
| Hpy166II | GTNNAC | 1 cut(s) | 59 |
| Hpy188III | TCNNGA | 1 cut(s) | 236 |
| Hpy8I | GTNNAC | 1 cut(s) | 59 |
| HpyAV | CCTTC | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 303 |
| Hsp92II | CATG | 2 cut(s) | 182, 239 |
| KroI | GCCGGC | 1 cut(s) | 317 |
| KroNI | GCCGGC | 1 cut(s) | 319 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| LpnPI | CCDG | 5 cut(s) | 21, 125, 152, 283, 331 |
| MabI | ACCWGGT | 1 cut(s) | 138 |
| MaeI | CTAG | 1 cut(s) | 65 |
| MboII | GAAGA | 2 cut(s) | 17, 235 |
| MluCI | AATT | 4 cut(s) | 193, 239, 324, 334 |
| MlyI | GAGTC | 1 cut(s) | 377 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MroNI | GCCGGC | 1 cut(s) | 317 |
| MroXI | GAANNNNTTC | 1 cut(s) | 110 |
| MseI | TTAA | 5 cut(s) | 51, 288, 312, 329, 379 |
| MspI | CCGG | 1 cut(s) | 318 |
| MspR9I | CCNGG | 1 cut(s) | 140 |
| MvaI | CCWGG | 1 cut(s) | 140 |
| NaeI | GCCGGC | 1 cut(s) | 319 |
| NgoMIV | GCCGGC | 1 cut(s) | 317 |
| NlaIII | CATG | 2 cut(s) | 182, 239 |
| NspI | RCATGY | 1 cut(s) | 182 |
| PagI | TCATGA | 1 cut(s) | 235 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PdiI | GCCGGC | 1 cut(s) | 319 |
| PdmI | GAANNNNTTC | 1 cut(s) | 110 |
| PleI | GAGTC | 1 cut(s) | 376 |
| PpsI | GAGTC | 1 cut(s) | 376 |
| PscI | ACATGT | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 138 |
| PspGI | CCWGG | 1 cut(s) | 138 |
| PspPI | GGNCC | 1 cut(s) | 320 |
| RigI | GGCCGGCC | 1 cut(s) | 321 |
| SaqAI | TTAA | 5 cut(s) | 51, 288, 312, 329, 379 |
| Sau96I | GGNCC | 1 cut(s) | 320 |
| SchI | GAGTC | 1 cut(s) | 377 |
| ScrFI | CCNGG | 1 cut(s) | 140 |
| SetI | ASST | 5 cut(s) | 141, 154, 162, 205, 297 |
| SexAI | ACCWGGT | 1 cut(s) | 138 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| SpeI | ACTAGT | 1 cut(s) | 64 |
| Sse9I | AATT | 4 cut(s) | 193, 239, 324, 334 |
| SspMI | CTAG | 1 cut(s) | 65 |
| StyD4I | CCNGG | 1 cut(s) | 138 |
| TaaI | ACNGT | 1 cut(s) | 303 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 4 cut(s) | 193, 239, 324, 334 |
| Tru1I | TTAA | 5 cut(s) | 51, 288, 312, 329, 379 |
| Tru9I | TTAA | 5 cut(s) | 51, 288, 312, 329, 379 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspRI | CASTG | 1 cut(s) | 121 |
| XapI | RAATTY | 2 cut(s) | 193, 239 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 1 cut(s) | 110 |
| XspI | CTAG | 1 cut(s) | 65 |