Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 201, 214 |
| AcsI | RAATTY | 2 cut(s) | 67, 284 |
| AgsI | TTSAA | 2 cut(s) | 66, 310 |
| AluBI | AGCT | 3 cut(s) | 101, 161, 236 |
| AluI | AGCT | 3 cut(s) | 101, 161, 236 |
| Alw26I | GTCTC | 1 cut(s) | 179 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| ApoI | RAATTY | 2 cut(s) | 67, 284 |
| AspS9I | GGNCC | 1 cut(s) | 88 |
| AsuC2I | CCSGG | 2 cut(s) | 177, 178 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| BcnI | CCSGG | 2 cut(s) | 177, 178 |
| BcoDI | GTCTC | 1 cut(s) | 179 |
| BfmI | CTRYAG | 1 cut(s) | 243 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 178 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 1 cut(s) | 88 |
| BmiI | GGNNCC | 2 cut(s) | 90, 174 |
| BmrFI | CCNGG | 2 cut(s) | 177, 178 |
| BmsI | GCATC | 2 cut(s) | 62, 144 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| BpuMI | CCSGG | 2 cut(s) | 177, 178 |
| BsaJI | CCNNGG | 1 cut(s) | 176 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 176 |
| BseGI | GGATG | 2 cut(s) | 53, 145 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 2 cut(s) | 41, 177 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BsmAI | GTCTC | 1 cut(s) | 179 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 1 cut(s) | 177 |
| BspACI | CCGC | 2 cut(s) | 201, 214 |
| BspLI | GGNNCC | 2 cut(s) | 90, 174 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| BssECI | CCNNGG | 1 cut(s) | 176 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstC8I | GCNNGC | 1 cut(s) | 159 |
| BstF5I | GGATG | 2 cut(s) | 53, 145 |
| BstMAI | GTCTC | 1 cut(s) | 179 |
| BstSCI | CCNGG | 2 cut(s) | 175, 176 |
| BstSFI | CTRYAG | 1 cut(s) | 243 |
| BtsCI | GGATG | 2 cut(s) | 53, 145 |
| Cac8I | GCNNGC | 1 cut(s) | 159 |
| Cfr13I | GGNCC | 1 cut(s) | 88 |
| Cfr9I | CCCGGG | 1 cut(s) | 176 |
| CviAII | CATG | 1 cut(s) | 25 |
| CviJI | RGCY | 6 cut(s) | 40, 101, 161, 175, 236, 305 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 101, 161, 175, 236, 305 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| EciI | GGCGGA | 1 cut(s) | 229 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| FaeI | CATG | 1 cut(s) | 28 |
| FaiI | YATR | 4 cut(s) | 26, 191, 233, 253 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FatI | CATG | 1 cut(s) | 24 |
| FokI | GGATG | 2 cut(s) | 40, 152 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HapII | CCGG | 2 cut(s) | 41, 177 |
| Hin1II | CATG | 1 cut(s) | 28 |
| HinfI | GANTC | 3 cut(s) | 4, 228, 310 |
| HpaII | CCGG | 2 cut(s) | 41, 177 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 1 cut(s) | 8 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 314 |
| Hpy8I | GTNNAC | 1 cut(s) | 8 |
| Hpy99I | CGWCG | 1 cut(s) | 227 |
| HpyAV | CCTTC | 1 cut(s) | 204 |
| HpyCH4V | TGCA | 4 cut(s) | 53, 120, 157, 255 |
| Hsp92II | CATG | 1 cut(s) | 28 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| LpnPI | CCDG | 6 cut(s) | 54, 57, 63, 105, 190, 286 |
| LweI | GCATC | 2 cut(s) | 62, 144 |
| MaeIII | GTNAC | 1 cut(s) | 218 |
| MboII | GAAGA | 2 cut(s) | 41, 230 |
| MhlI | GDGCHC | 1 cut(s) | 177 |
| MluCI | AATT | 3 cut(s) | 61, 67, 284 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 2 cut(s) | 81, 117 |
| MnlI | CCTC | 4 cut(s) | 37, 197, 241, 283 |
| MslI | CAYNNNNRTG | 1 cut(s) | 152 |
| MspI | CCGG | 2 cut(s) | 41, 177 |
| MspR9I | CCNGG | 2 cut(s) | 177, 178 |
| NciI | CCSGG | 2 cut(s) | 177, 178 |
| NlaIII | CATG | 1 cut(s) | 28 |
| NlaIV | GGNNCC | 2 cut(s) | 90, 174 |
| NmuCI | GTSAC | 1 cut(s) | 218 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PfeI | GAWTC | 2 cut(s) | 228, 310 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 2 cut(s) | 90, 174 |
| PspPI | GGNCC | 1 cut(s) | 88 |
| RseI | CAYNNNNRTG | 1 cut(s) | 152 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| Sau96I | GGNCC | 1 cut(s) | 88 |
| SchI | GAGTC | 1 cut(s) | 13 |
| ScrFI | CCNGG | 2 cut(s) | 177, 178 |
| SduI | GDGCHC | 1 cut(s) | 177 |
| SetI | ASST | 7 cut(s) | 48, 103, 163, 238, 252, 263, 294 |
| SfaNI | GCATC | 2 cut(s) | 62, 144 |
| SfcI | CTRYAG | 1 cut(s) | 243 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmaI | CCCGGG | 1 cut(s) | 178 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 152 |
| Sse9I | AATT | 3 cut(s) | 61, 67, 284 |
| SsiI | CCGC | 2 cut(s) | 201, 214 |
| StyD4I | CCNGG | 2 cut(s) | 175, 176 |
| TaqI | TCGA | 2 cut(s) | 103, 313 |
| TasI | AATT | 3 cut(s) | 61, 67, 284 |
| TfiI | GAWTC | 2 cut(s) | 228, 310 |
| TseFI | GTSAC | 1 cut(s) | 218 |
| Tsp45I | GTSAC | 1 cut(s) | 218 |
| TspGWI | ACGGA | 1 cut(s) | 240 |
| TspMI | CCCGGG | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| XapI | RAATTY | 2 cut(s) | 67, 284 |
| XmaI | CCCGGG | 1 cut(s) | 176 |