Rh3AG115100

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003465
Physical Location & Seq
Reverse (-)
9832852 .. 9838407
5556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG115100.1

Sequence Viewer

Length: 330 bp
ATGGAACGCATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCGACCCAATTTTAAGTAATCTGTATGGTGTAGATTGGGAGAGCAAACTTGAGGTATTAATTCTTCAGATTCAGTTACTTCACGACATTGTGTTTTATGTATTTTACTTTATCACTCATGAGTATCCTGCTACTGCTGCTGATTCTCAGGCAAACAAGGAAGCAGCTGATGAATGTTTTGTTTTCGTTGGGAATAAAAGAAGACAAAGGATAAGCAAACAGAAGCAAACATCGCTGCTTGGTAATGGCACATTCAAAGGCTGTCTCAACCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

109

Amino Acids

12.57

Weight (kDa)

6.08

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 2 cut(s) 31, 218
AluI AGCT 2 cut(s) 31, 218
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 188, 215, 286
AseI ATTAAT 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 175, 227, 273
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 3 cut(s) 189, 216, 287
BlsI GCNGC 3 cut(s) 190, 217, 288
BpiI GAAGAC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 3 cut(s) 175, 227, 273
BshFI GGCC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 1 cut(s) 53
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 188, 283
BstV1I GCAGC 3 cut(s) 175, 227, 273
BstV2I GAAGAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 267
CciI TCATGA 1 cut(s) 169
CviAII CATG 1 cut(s) 170
CviJI RGCY 4 cut(s) 31, 53, 218, 312
CviKI_1 RGCY 4 cut(s) 31, 53, 218, 312
DdeI CTNAG 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 101
FaeI CATG 1 cut(s) 173
FaiI YATR 3 cut(s) 78, 150, 171
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 189, 216, 287
Fsp4HI GCNGC 3 cut(s) 189, 216, 287
GluI GCNGC 3 cut(s) 189, 216, 287
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 1 cut(s) 173
HinfI GANTC 2 cut(s) 121, 194
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 134, 170
HpyCH4III ACNGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 283
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 173
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 185, 192
Lsp1109I GCAGC 3 cut(s) 175, 227, 273
MaeIII GTNAC 1 cut(s) 126
MboII GAAGA 2 cut(s) 107, 264
MluCI AATT 2 cut(s) 60, 111
MnlI CCTC 1 cut(s) 97
MseI TTAA 4 cut(s) 24, 48, 65, 110
MspA1I CMGCKG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 188, 283
NlaIII CATG 1 cut(s) 173
PagI TCATGA 1 cut(s) 169
PfeI GAWTC 2 cut(s) 121, 194
PkrI GCNGC 3 cut(s) 190, 217, 288
PshBI ATTAAT 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 4 cut(s) 24, 48, 65, 110
SatI GCNGC 3 cut(s) 189, 216, 287
SetI ASST 3 cut(s) 33, 108, 220
SgeI CNNG 7 cut(s) 113, 146, 182, 191, 212, 220, 302
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 60, 111
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 60, 111
TfiI GAWTC 2 cut(s) 121, 194
Tru1I TTAA 4 cut(s) 24, 48, 65, 110
Tru9I TTAA 4 cut(s) 24, 48, 65, 110
TseI GCWGC 3 cut(s) 188, 215, 286
TspDTI ATGAA 1 cut(s) 237
VspI ATTAAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.