MD05G1190300.v1.1

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003465
Physical Location & Seq
Forward (+)
31939700 .. 31942008
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1190300.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGTGAAGATGGAAGATGCTAAGCCTGAAGTTTCAGCTTCCAACAATTCAAATTCCGAGAGCTGCGATTCTGGTCTTCTCCAAGATCGATTTACTTATTTGTGCAAGATGGTATTTGTCATTGGACGAGAACTCTTACAAGCAAGCTGCAAATATGTTCAAAGAAACCAAGATCTGTTAATATCAAATGCTTCAGCTATTGGCAATGGAACAGTATGTATTGTTATTTCTCCATTCTATAGTCATGTTAATAATGTTATGTTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

90

Amino Acids

9.84

Weight (kDa)

6.53

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 48, 177
AgsI TTSAA 3 cut(s) 51, 161, 265
AluBI AGCT 4 cut(s) 38, 63, 147, 197
AluI AGCT 4 cut(s) 38, 63, 147, 197
ApeKI GCWGC 2 cut(s) 63, 147
ApoI RAATTY 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 50, 134
BccI CCATC 2 cut(s) 4, 103
BfmI CTRYAG 1 cut(s) 238
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 64, 148
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 2 cut(s) 65, 149
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 88
BseMI GCAATG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 50, 134
BshVI ATCGAT 1 cut(s) 88
Bsp143I GATC 2 cut(s) 85, 172
Bsp1720I GCTNAGC 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 2 cut(s) 85, 172
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 2 cut(s) 88, 175
BstMBI GATC 2 cut(s) 85, 172
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 50, 134
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 88
BsuTUI ATCGAT 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 88
CviAII CATG 1 cut(s) 245
CviJI RGCY 5 cut(s) 25, 38, 63, 147, 197
CviKI_1 RGCY 5 cut(s) 25, 38, 63, 147, 197
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 87, 174
DpnII GATC 2 cut(s) 85, 172
Eco57I CTGAAG 2 cut(s) 48, 177
FaeI CATG 1 cut(s) 248
FaiI YATR 5 cut(s) 156, 217, 240, 246, 260
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 64, 148
Fsp4HI GCNGC 2 cut(s) 64, 148
GluI GCNGC 2 cut(s) 64, 148
Hin1II CATG 1 cut(s) 248
HinfI GANTC 1 cut(s) 68
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 105, 150
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 2 cut(s) 85, 172
LpnPI CCDG 2 cut(s) 39, 57
Lsp1109I GCAGC 2 cut(s) 50, 134
LweI GCATC 1 cut(s) 7
MalI GATC 2 cut(s) 87, 174
MboI GATC 2 cut(s) 85, 172
MboII GAAGA 3 cut(s) 19, 26, 68
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 46, 52
MmeI TCCRAC 1 cut(s) 66
MseI TTAA 2 cut(s) 179, 249
NdeII GATC 2 cut(s) 85, 172
NlaIII CATG 1 cut(s) 248
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 65, 149
PsuI RGATCY 1 cut(s) 172
SaqAI TTAA 2 cut(s) 179, 249
SatI GCNGC 2 cut(s) 64, 148
Sau3AI GATC 2 cut(s) 85, 172
SetI ASST 4 cut(s) 40, 65, 149, 199
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 46, 52
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 46, 52
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 179, 249
Tru9I TTAA 2 cut(s) 179, 249
TseI GCWGC 2 cut(s) 63, 147
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.