Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 139 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AgsI | TTSAA | 2 cut(s) | 43, 314 |
| AluBI | AGCT | 6 cut(s) | 46, 98, 106, 149, 187, 310 |
| AluI | AGCT | 6 cut(s) | 46, 98, 106, 149, 187, 310 |
| AoxI | GGCC | 3 cut(s) | 207, 211, 276 |
| ApeKI | GCWGC | 1 cut(s) | 106 |
| ApoI | RAATTY | 1 cut(s) | 139 |
| AspS9I | GGNCC | 1 cut(s) | 212 |
| AsuHPI | GGTGA | 1 cut(s) | 100 |
| BaeGI | GKGCMC | 1 cut(s) | 335 |
| BbvI | GCAGC | 1 cut(s) | 93 |
| BccI | CCATC | 1 cut(s) | 33 |
| BisI | GCNGC | 1 cut(s) | 107 |
| BlsI | GCNGC | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 1 cut(s) | 212 |
| BpuEI | CTTGAG | 2 cut(s) | 278, 313 |
| Bse118I | RCCGGY | 1 cut(s) | 209 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseSI | GKGCMC | 1 cut(s) | 335 |
| BseXI | GCAGC | 1 cut(s) | 93 |
| BshFI | GGCC | 3 cut(s) | 209, 213, 278 |
| BsiSI | CCGG | 1 cut(s) | 210 |
| BsnI | GGCC | 3 cut(s) | 209, 213, 278 |
| Bsp1286I | GDGCHC | 1 cut(s) | 335 |
| BspANI | GGCC | 3 cut(s) | 209, 213, 278 |
| BsrFI | RCCGGY | 1 cut(s) | 209 |
| BssAI | RCCGGY | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 88, 195 |
| BstC8I | GCNNGC | 3 cut(s) | 211, 276, 308 |
| BstDEI | CTNAG | 1 cut(s) | 336 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 303 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstSLI | GKGCMC | 1 cut(s) | 335 |
| BstV1I | GCAGC | 1 cut(s) | 93 |
| BsuRI | GGCC | 3 cut(s) | 209, 213, 278 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 3 cut(s) | 211, 276, 308 |
| Cfr10I | RCCGGY | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 1 cut(s) | 212 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 1 cut(s) | 336 |
| FaeI | CATG | 1 cut(s) | 128 |
| FaiI | YATR | 3 cut(s) | 126, 232, 234 |
| FatI | CATG | 1 cut(s) | 124 |
| Fnu4HI | GCNGC | 1 cut(s) | 107 |
| FokI | GGATG | 1 cut(s) | 89 |
| FseI | GGCCGGCC | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 1 cut(s) | 107 |
| GluI | GCNGC | 1 cut(s) | 107 |
| HaeIII | GGCC | 3 cut(s) | 209, 213, 278 |
| HapII | CCGG | 1 cut(s) | 210 |
| Hin1II | CATG | 1 cut(s) | 128 |
| HindIII | AAGCTT | 2 cut(s) | 44, 308 |
| HinfI | GANTC | 2 cut(s) | 5, 39 |
| HpaII | CCGG | 1 cut(s) | 210 |
| HphI | GGTGA | 1 cut(s) | 100 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 88, 195 |
| HpyCH4V | TGCA | 1 cut(s) | 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 303 |
| HpyF3I | CTNAG | 1 cut(s) | 336 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| KroI | GCCGGC | 1 cut(s) | 209 |
| KroNI | GCCGGC | 1 cut(s) | 211 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 2 cut(s) | 223, 260 |
| Lsp1109I | GCAGC | 1 cut(s) | 93 |
| MaeIII | GTNAC | 1 cut(s) | 88 |
| MboII | GAAGA | 1 cut(s) | 65 |
| MhlI | GDGCHC | 1 cut(s) | 335 |
| MluCI | AATT | 3 cut(s) | 33, 139, 280 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MnlI | CCTC | 1 cut(s) | 253 |
| MroNI | GCCGGC | 1 cut(s) | 209 |
| MseI | TTAA | 4 cut(s) | 180, 204, 221, 302 |
| MspI | CCGG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 303 |
| NaeI | GCCGGC | 1 cut(s) | 211 |
| NgoMIV | GCCGGC | 1 cut(s) | 209 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PdiI | GCCGGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 39 |
| PkrI | GCNGC | 1 cut(s) | 108 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| PscI | ACATGT | 1 cut(s) | 124 |
| PspPI | GGNCC | 1 cut(s) | 212 |
| RigI | GGCCGGCC | 1 cut(s) | 213 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SaqAI | TTAA | 4 cut(s) | 180, 204, 221, 302 |
| SatI | GCNGC | 1 cut(s) | 107 |
| Sau96I | GGNCC | 1 cut(s) | 212 |
| SchI | GAGTC | 1 cut(s) | 14 |
| SduI | GDGCHC | 1 cut(s) | 335 |
| SetI | ASST | 6 cut(s) | 48, 100, 108, 151, 189, 312 |
| SmlI | CTYRAG | 2 cut(s) | 257, 292 |
| SmoI | CTYRAG | 2 cut(s) | 257, 292 |
| Sse9I | AATT | 3 cut(s) | 33, 139, 280 |
| TaaI | ACNGT | 3 cut(s) | 16, 88, 195 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 3 cut(s) | 33, 139, 280 |
| TatI | WGTACW | 1 cut(s) | 288 |
| TfiI | GAWTC | 1 cut(s) | 39 |
| Tru1I | TTAA | 4 cut(s) | 180, 204, 221, 302 |
| Tru9I | TTAA | 4 cut(s) | 180, 204, 221, 302 |
| TscAI | CASTG | 1 cut(s) | 67 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 106 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspGWI | ACGGA | 2 cut(s) | 10, 65 |
| TspRI | CASTG | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 139 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 32 |