Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 63 |
| AcuI | CTGAAG | 1 cut(s) | 48 |
| AfaI | GTAC | 1 cut(s) | 216 |
| AgsI | TTSAA | 3 cut(s) | 50, 160, 265 |
| AluBI | AGCT | 2 cut(s) | 37, 197 |
| AluI | AGCT | 2 cut(s) | 37, 197 |
| Alw26I | GTCTC | 1 cut(s) | 234 |
| Ama87I | CYCGRG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaI | CYCGRG | 1 cut(s) | 55 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BccI | CCATC | 1 cut(s) | 4 |
| BcoDI | GTCTC | 1 cut(s) | 234 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BglII | AGATCT | 1 cut(s) | 172 |
| BisI | GCNGC | 1 cut(s) | 63 |
| BlpI | GCTNAGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 64 |
| BmeT110I | CYCGRG | 1 cut(s) | 55 |
| BmsI | GCATC | 1 cut(s) | 7 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 21 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaAI | YACGTR | 1 cut(s) | 218 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiHKCI | CYCGRG | 1 cut(s) | 55 |
| BsmAI | GTCTC | 1 cut(s) | 234 |
| BsoBI | CYCGRG | 1 cut(s) | 55 |
| Bsp143I | GATC | 2 cut(s) | 84, 172 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 21 |
| BspACI | CCGC | 1 cut(s) | 63 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BssMI | GATC | 2 cut(s) | 84, 172 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| BstBAI | YACGTR | 1 cut(s) | 218 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstKTI | GATC | 2 cut(s) | 87, 175 |
| BstMAI | GTCTC | 1 cut(s) | 234 |
| BstMBI | GATC | 2 cut(s) | 84, 172 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstSNI | TACGTA | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BstX2I | RGATCY | 1 cut(s) | 172 |
| BstYI | RGATCY | 1 cut(s) | 172 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 180 |
| Csp6I | GTAC | 1 cut(s) | 215 |
| CviAII | CATG | 1 cut(s) | 245 |
| CviJI | RGCY | 4 cut(s) | 25, 37, 62, 197 |
| CviKI_1 | RGCY | 4 cut(s) | 25, 37, 62, 197 |
| CviQI | GTAC | 1 cut(s) | 215 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 2 cut(s) | 86, 174 |
| DpnII | GATC | 2 cut(s) | 84, 172 |
| Eco105I | TACGTA | 1 cut(s) | 218 |
| Eco57I | CTGAAG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 1 cut(s) | 55 |
| FaeI | CATG | 1 cut(s) | 248 |
| FaiI | YATR | 4 cut(s) | 227, 240, 246, 260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 21, 53 |
| FatI | CATG | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 1 cut(s) | 63 |
| GluI | GCNGC | 1 cut(s) | 63 |
| HgaI | GACGC | 1 cut(s) | 180 |
| Hin1II | CATG | 1 cut(s) | 248 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188III | TCNNGA | 1 cut(s) | 55 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 2 cut(s) | 104, 149 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92II | CATG | 1 cut(s) | 248 |
| Kzo9I | GATC | 2 cut(s) | 84, 172 |
| LpnPI | CCDG | 2 cut(s) | 39, 56 |
| LweI | GCATC | 1 cut(s) | 7 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MalI | GATC | 2 cut(s) | 86, 174 |
| MboI | GATC | 2 cut(s) | 84, 172 |
| MboII | GAAGA | 3 cut(s) | 19, 26, 67 |
| MflI | RGATCY | 1 cut(s) | 172 |
| MluCI | AATT | 2 cut(s) | 45, 66 |
| MmeI | TCCRAC | 1 cut(s) | 65 |
| MseI | TTAA | 2 cut(s) | 179, 249 |
| NdeII | GATC | 2 cut(s) | 84, 172 |
| NlaIII | CATG | 1 cut(s) | 248 |
| PkrI | GCNGC | 1 cut(s) | 64 |
| Ppu21I | YACGTR | 1 cut(s) | 218 |
| PsuI | RGATCY | 1 cut(s) | 172 |
| RsaI | GTAC | 1 cut(s) | 216 |
| RsaNI | GTAC | 1 cut(s) | 215 |
| SaqAI | TTAA | 2 cut(s) | 179, 249 |
| SatI | GCNGC | 1 cut(s) | 63 |
| Sau3AI | GATC | 2 cut(s) | 84, 172 |
| SetI | ASST | 4 cut(s) | 39, 113, 199, 220 |
| SfaNI | GCATC | 1 cut(s) | 7 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SnaBI | TACGTA | 1 cut(s) | 218 |
| Sse9I | AATT | 2 cut(s) | 45, 66 |
| SsiI | CCGC | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TaqI | TCGA | 1 cut(s) | 87 |
| TasI | AATT | 2 cut(s) | 45, 66 |
| TauI | GCSGC | 1 cut(s) | 65 |
| Tru1I | TTAA | 2 cut(s) | 179, 249 |
| Tru9I | TTAA | 2 cut(s) | 179, 249 |