Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 178 |
| AcsI | RAATTY | 2 cut(s) | 4, 112 |
| AflIII | ACRYGT | 1 cut(s) | 97 |
| AgsI | TTSAA | 3 cut(s) | 9, 188, 200 |
| AjnI | CCWGG | 1 cut(s) | 57 |
| AluBI | AGCT | 3 cut(s) | 71, 79, 122 |
| AluI | AGCT | 3 cut(s) | 71, 79, 122 |
| AlwI | GGATC | 1 cut(s) | 178 |
| ApoI | RAATTY | 2 cut(s) | 4, 112 |
| BciT130I | CCWGG | 1 cut(s) | 59 |
| Bme1390I | CCNGG | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 59 |
| Bpu10I | CCTNAGC | 1 cut(s) | 155 |
| BseBI | CCWGG | 1 cut(s) | 59 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| Bsp143I | GATC | 1 cut(s) | 170 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspPI | GGATC | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 1 cut(s) | 59 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstKTI | GATC | 1 cut(s) | 173 |
| BstMBI | GATC | 1 cut(s) | 170 |
| BstNI | CCWGG | 1 cut(s) | 59 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSCI | CCNGG | 1 cut(s) | 57 |
| BtsIMutI | CAGTG | 1 cut(s) | 40 |
| CsiI | ACCWGGT | 1 cut(s) | 57 |
| CviAII | CATG | 1 cut(s) | 98 |
| CviJI | RGCY | 4 cut(s) | 19, 71, 79, 122 |
| CviKI_1 | RGCY | 4 cut(s) | 19, 71, 79, 122 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 1 cut(s) | 172 |
| DpnII | GATC | 1 cut(s) | 170 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 1 cut(s) | 57 |
| FaeI | CATG | 1 cut(s) | 101 |
| FaiI | YATR | 2 cut(s) | 99, 164 |
| FatI | CATG | 1 cut(s) | 97 |
| Hin1II | CATG | 1 cut(s) | 101 |
| HinfI | GANTC | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 1 cut(s) | 128 |
| Hpy188III | TCNNGA | 1 cut(s) | 204 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| Hsp92II | CATG | 1 cut(s) | 101 |
| Kzo9I | GATC | 1 cut(s) | 170 |
| LpnPI | CCDG | 3 cut(s) | 44, 71, 167 |
| MabI | ACCWGGT | 1 cut(s) | 57 |
| MalI | GATC | 1 cut(s) | 172 |
| MboI | GATC | 1 cut(s) | 170 |
| MboII | GAAGA | 1 cut(s) | 38 |
| MfeI | CAATTG | 1 cut(s) | 174 |
| MluCI | AATT | 4 cut(s) | 4, 112, 174, 195 |
| MmeI | TCCRAC | 1 cut(s) | 27 |
| MspR9I | CCNGG | 1 cut(s) | 59 |
| MunI | CAATTG | 1 cut(s) | 174 |
| MvaI | CCWGG | 1 cut(s) | 59 |
| NdeII | GATC | 1 cut(s) | 170 |
| NlaIII | CATG | 1 cut(s) | 101 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PciI | ACATGT | 1 cut(s) | 97 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PscI | ACATGT | 1 cut(s) | 97 |
| Psp6I | CCWGG | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 57 |
| Sau3AI | GATC | 1 cut(s) | 170 |
| ScrFI | CCNGG | 1 cut(s) | 59 |
| SetI | ASST | 5 cut(s) | 60, 73, 81, 124, 156 |
| SexAI | ACCWGGT | 1 cut(s) | 57 |
| SgeI | CNNG | 8 cut(s) | 28, 64, 70, 71, 80, 88, 110, 166 |
| Sse9I | AATT | 4 cut(s) | 4, 112, 174, 195 |
| StyD4I | CCNGG | 1 cut(s) | 57 |
| TasI | AATT | 4 cut(s) | 4, 112, 174, 195 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 38 |
| TspRI | CASTG | 1 cut(s) | 40 |
| XapI | RAATTY | 2 cut(s) | 4, 112 |
| XceI | RCATGY | 1 cut(s) | 101 |