Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 633 |
| AciI | CCGC | 1 cut(s) | 474 |
| AcoI | YGGCCR | 1 cut(s) | 242 |
| AcsI | RAATTY | 2 cut(s) | 51, 337 |
| AcuI | CTGAAG | 1 cut(s) | 175 |
| AfaI | GTAC | 1 cut(s) | 11 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 124 |
| AflIII | ACRYGT | 2 cut(s) | 15, 322 |
| AgsI | TTSAA | 3 cut(s) | 50, 101, 172 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 352, 384 |
| AluBI | AGCT | 5 cut(s) | 68, 296, 347, 367, 634 |
| AluI | AGCT | 5 cut(s) | 68, 296, 347, 367, 634 |
| Ama87I | CYCGRG | 1 cut(s) | 175 |
| AoxI | GGCC | 3 cut(s) | 242, 387, 391 |
| ApeKI | GCWGC | 2 cut(s) | 202, 224 |
| ApoI | RAATTY | 2 cut(s) | 51, 337 |
| AspS9I | GGNCC | 1 cut(s) | 392 |
| AvaI | CYCGRG | 1 cut(s) | 175 |
| BbvI | GCAGC | 2 cut(s) | 214, 236 |
| BceAI | ACGGC | 1 cut(s) | 257 |
| BfaI | CTAG | 2 cut(s) | 69, 284 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfuAI | ACCTGC | 1 cut(s) | 633 |
| BisI | GCNGC | 3 cut(s) | 203, 225, 475 |
| BlsI | GCNGC | 3 cut(s) | 204, 226, 476 |
| BmeT110I | CYCGRG | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 1 cut(s) | 392 |
| Bpu10I | CCTNAGC | 1 cut(s) | 198 |
| BpuEI | CTTGAG | 2 cut(s) | 143, 458 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 124 |
| Bse118I | RCCGGY | 1 cut(s) | 389 |
| BseGI | GGATG | 1 cut(s) | 507 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BseX3I | CGGCCG | 1 cut(s) | 242 |
| BseXI | GCAGC | 2 cut(s) | 214, 236 |
| Bsh1285I | CGRYCG | 1 cut(s) | 245 |
| BshFI | GGCC | 3 cut(s) | 244, 389, 393 |
| BsiEI | CGRYCG | 1 cut(s) | 245 |
| BsiHKCI | CYCGRG | 1 cut(s) | 175 |
| BsiSI | CCGG | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BsnI | GGCC | 3 cut(s) | 244, 389, 393 |
| BsoBI | CYCGRG | 1 cut(s) | 175 |
| Bsp143I | GATC | 1 cut(s) | 87 |
| BspACI | CCGC | 1 cut(s) | 474 |
| BspANI | GGCC | 3 cut(s) | 244, 389, 393 |
| BspMI | ACCTGC | 1 cut(s) | 633 |
| BsrFI | RCCGGY | 1 cut(s) | 389 |
| BssAI | RCCGGY | 1 cut(s) | 389 |
| BssMI | GATC | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 2 cut(s) | 112, 375 |
| BstC8I | GCNNGC | 1 cut(s) | 391 |
| BstDEI | CTNAG | 2 cut(s) | 152, 198 |
| BstF5I | GGATG | 1 cut(s) | 507 |
| BstKTI | GATC | 1 cut(s) | 90 |
| BstMBI | GATC | 1 cut(s) | 87 |
| BstMCI | CGRYCG | 1 cut(s) | 245 |
| BstNSI | RCATGY | 1 cut(s) | 326 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 2 cut(s) | 214, 236 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 566 |
| BstZI | CGGCCG | 1 cut(s) | 242 |
| BsuRI | GGCC | 3 cut(s) | 244, 389, 393 |
| BtsCI | GGATG | 1 cut(s) | 507 |
| BtsIMutI | CAGTG | 1 cut(s) | 117 |
| BveI | ACCTGC | 1 cut(s) | 633 |
| Cac8I | GCNNGC | 1 cut(s) | 391 |
| Cfr10I | RCCGGY | 1 cut(s) | 389 |
| Cfr13I | GGNCC | 1 cut(s) | 392 |
| Csp6I | GTAC | 1 cut(s) | 10 |
| CviAII | CATG | 3 cut(s) | 323, 496, 512 |
| CviQI | GTAC | 1 cut(s) | 10 |
| DdeI | CTNAG | 2 cut(s) | 152, 198 |
| DpnI | GATC | 1 cut(s) | 89 |
| DpnII | GATC | 1 cut(s) | 87 |
| DraI | TTTAAA | 1 cut(s) | 22 |
| EaeI | YGGCCR | 1 cut(s) | 242 |
| EagI | CGGCCG | 1 cut(s) | 242 |
| EclXI | CGGCCG | 1 cut(s) | 242 |
| Eco32I | GATATC | 1 cut(s) | 505 |
| Eco52I | CGGCCG | 1 cut(s) | 242 |
| Eco57I | CTGAAG | 1 cut(s) | 175 |
| Eco88I | CYCGRG | 1 cut(s) | 175 |
| EcoRV | GATATC | 1 cut(s) | 505 |
| FaeI | CATG | 3 cut(s) | 326, 499, 515 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 145, 177, 564, 596 |
| FatI | CATG | 3 cut(s) | 322, 495, 511 |
| Fnu4HI | GCNGC | 3 cut(s) | 203, 225, 475 |
| FokI | GGATG | 1 cut(s) | 494 |
| FseI | GGCCGGCC | 1 cut(s) | 393 |
| Fsp4HI | GCNGC | 3 cut(s) | 203, 225, 475 |
| FspBI | CTAG | 2 cut(s) | 69, 284 |
| GluI | GCNGC | 3 cut(s) | 203, 225, 475 |
| HaeIII | GGCC | 3 cut(s) | 244, 389, 393 |
| HapII | CCGG | 1 cut(s) | 390 |
| Hin1II | CATG | 3 cut(s) | 326, 499, 515 |
| HpaII | CCGG | 1 cut(s) | 390 |
| Hpy166II | GTNNAC | 2 cut(s) | 115, 274 |
| Hpy188I | TCNGA | 1 cut(s) | 57 |
| Hpy188III | TCNNGA | 1 cut(s) | 91 |
| Hpy8I | GTNNAC | 2 cut(s) | 115, 274 |
| Hpy99I | CGWCG | 2 cut(s) | 37, 250 |
| HpyAV | CCTTC | 2 cut(s) | 66, 88 |
| HpyCH4III | ACNGT | 2 cut(s) | 112, 375 |
| HpyCH4IV | ACGT | 2 cut(s) | 17, 32 |
| HpyCH4V | TGCA | 2 cut(s) | 533, 605 |
| HpyF3I | CTNAG | 2 cut(s) | 152, 198 |
| HpySE526I | ACGT | 2 cut(s) | 17, 32 |
| Hsp92II | CATG | 3 cut(s) | 326, 499, 515 |
| KroI | GCCGGC | 1 cut(s) | 389 |
| KroNI | GCCGGC | 1 cut(s) | 391 |
| Kzo9I | GATC | 1 cut(s) | 87 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LpnPI | CCDG | 1 cut(s) | 403 |
| Lsp1109I | GCAGC | 2 cut(s) | 214, 236 |
| MaeI | CTAG | 2 cut(s) | 69, 284 |
| MaeII | ACGT | 2 cut(s) | 17, 32 |
| MaeIII | GTNAC | 4 cut(s) | 137, 145, 210, 303 |
| MalI | GATC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 87 |
| MboII | GAAGA | 5 cut(s) | 97, 117, 211, 263, 631 |
| MluCI | AATT | 4 cut(s) | 51, 337, 396, 607 |
| MnlI | CCTC | 4 cut(s) | 118, 177, 433, 492 |
| MroNI | GCCGGC | 1 cut(s) | 389 |
| MseI | TTAA | 3 cut(s) | 21, 384, 401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 564 |
| MspI | CCGG | 1 cut(s) | 390 |
| NaeI | GCCGGC | 1 cut(s) | 391 |
| NdeII | GATC | 1 cut(s) | 87 |
| NgoMIV | GCCGGC | 1 cut(s) | 389 |
| NlaIII | CATG | 3 cut(s) | 326, 499, 515 |
| NmuCI | GTSAC | 2 cut(s) | 137, 210 |
| NspI | RCATGY | 1 cut(s) | 326 |
| PciI | ACATGT | 1 cut(s) | 322 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PdiI | GCCGGC | 1 cut(s) | 391 |
| PkrI | GCNGC | 3 cut(s) | 204, 226, 476 |
| PscI | ACATGT | 1 cut(s) | 322 |
| PspPI | GGNCC | 1 cut(s) | 392 |
| RigI | GGCCGGCC | 1 cut(s) | 393 |
| RsaI | GTAC | 1 cut(s) | 11 |
| RsaNI | GTAC | 1 cut(s) | 10 |
| RseI | CAYNNNNRTG | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 21, 384, 401 |
| SatI | GCNGC | 3 cut(s) | 203, 225, 475 |
| Sau3AI | GATC | 1 cut(s) | 87 |
| Sau96I | GGNCC | 1 cut(s) | 392 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 564 |
| SmlI | CTYRAG | 2 cut(s) | 122, 437 |
| SmoI | CTYRAG | 2 cut(s) | 122, 437 |
| Sse9I | AATT | 4 cut(s) | 51, 337, 396, 607 |
| SsiI | CCGC | 1 cut(s) | 474 |
| SspMI | CTAG | 2 cut(s) | 69, 284 |
| TaaI | ACNGT | 2 cut(s) | 112, 375 |
| TaiI | ACGT | 2 cut(s) | 20, 35 |
| TasI | AATT | 4 cut(s) | 51, 337, 396, 607 |
| TauI | GCSGC | 1 cut(s) | 477 |
| Tru1I | TTAA | 3 cut(s) | 21, 384, 401 |
| Tru9I | TTAA | 3 cut(s) | 21, 384, 401 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TseFI | GTSAC | 2 cut(s) | 137, 210 |
| TseI | GCWGC | 2 cut(s) | 202, 224 |
| Tsp45I | GTSAC | 2 cut(s) | 137, 210 |
| TspDTI | ATGAA | 2 cut(s) | 600, 632 |
| TspGWI | ACGGA | 3 cut(s) | 263, 377, 399 |
| TspRI | CASTG | 1 cut(s) | 117 |
| XapI | RAATTY | 2 cut(s) | 51, 337 |
| XceI | RCATGY | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 69, 284 |