Rroxscaffold_4G00318550

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003465
Physical Location & Seq
Reverse (-)
44735967 .. 44739109
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318550.1

Sequence Viewer

Length: 351 bp
ATGGCCAAAGGGAGACTTCTACAGATAATGAAGGAGAATTTCAAGGGATTGCAACAAGAAAAGGTCCAAAACAATGAATGGAAGCGCAAATATGAACCGGAGAGGGCGCACAATCTGCATTTGGAACATGAAGGGCCATCACATAGAGAGAATAACGGGGATGATGAGAGGATAGAGAACTTGGCCAGGAGATCAAATGACCAATCGAACAATGTTGTGGGAGCAATGGGATATGCTCTCATGAAGTTCTTCGGGATGGTGAATGTGATATCGATTCAAAATCGCTTCTCAATAAGTTTGCAAGAAAGGTGTCATTCAAACTTTCATGGTGCTGCAAAGGTGACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

116

Amino Acids

13.48

Weight (kDa)

8.82

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 3, 183
AcsI RAATTY 1 cut(s) 37
AgsI TTSAA 3 cut(s) 43, 278, 318
AjnI CCWGG 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 3 cut(s) 3, 134, 183
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 87, 109
AspS9I GGNCC 2 cut(s) 64, 134
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 64
BalI TGGCCA 2 cut(s) 5, 185
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 145, 250
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 7
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 64, 134
BmrFI CCNGG 1 cut(s) 187
Bsa29I ATCGAT 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 272
BseGI GGATG 2 cut(s) 166, 261
BseMI GCAATG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 3 cut(s) 5, 136, 185
BshVI ATCGAT 1 cut(s) 272
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 3 cut(s) 5, 136, 185
Bsp143I GATC 1 cut(s) 191
BspANI GGCC 3 cut(s) 5, 136, 185
BspDI ATCGAT 1 cut(s) 272
BspHI TCATGA 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 231
BssMI GATC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 2 cut(s) 166, 261
BstHHI GCGC 2 cut(s) 87, 109
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 187
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 272
BsuRI GGCC 3 cut(s) 5, 136, 185
BsuTUI ATCGAT 1 cut(s) 272
BtsCI GGATG 2 cut(s) 166, 261
CciI TCATGA 1 cut(s) 240
CfoI GCGC 2 cut(s) 87, 109
Cfr13I GGNCC 2 cut(s) 64, 134
ClaI ATCGAT 1 cut(s) 272
CviAII CATG 3 cut(s) 128, 241, 326
CviJI RGCY 3 cut(s) 5, 136, 185
CviKI_1 RGCY 3 cut(s) 5, 136, 185
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EaeI YGGCCR 2 cut(s) 3, 183
Eco32I GATATC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 270
FaeI CATG 3 cut(s) 131, 244, 329
FaiI YATR 6 cut(s) 93, 129, 144, 234, 242, 327
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 3 cut(s) 127, 240, 325
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 2 cut(s) 173, 268
Fsp4HI GCNGC 1 cut(s) 333
GlaI GCGC 2 cut(s) 86, 108
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 3 cut(s) 5, 136, 185
HapII CCGG 1 cut(s) 98
HhaI GCGC 2 cut(s) 87, 109
Hin1II CATG 3 cut(s) 131, 244, 329
Hin6I GCGC 2 cut(s) 85, 107
HinP1I GCGC 2 cut(s) 85, 107
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 241, 253
HpyAV CCTTC 2 cut(s) 25, 125
HpyCH4V TGCA 4 cut(s) 52, 118, 301, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 3 cut(s) 131, 244, 329
HspAI GCGC 2 cut(s) 85, 107
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 3 cut(s) 111, 172, 199
Lsp1109I GCAGC 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 1 cut(s) 241
MlsI TGGCCA 2 cut(s) 5, 185
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 2 cut(s) 5, 185
MnlI CCTC 2 cut(s) 96, 162
Mox20I TGGCCA 2 cut(s) 5, 185
MroXI GAANNNNTTC 1 cut(s) 248
MscI TGGCCA 2 cut(s) 5, 185
Msp20I TGGCCA 2 cut(s) 5, 185
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 131, 244, 329
NmuCI GTSAC 1 cut(s) 340
PagI TCATGA 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 185
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 2 cut(s) 64, 134
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 64, 134
ScrFI CCNGG 1 cut(s) 187
SetI ASST 3 cut(s) 66, 311, 342
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 64
Sse9I AATT 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 185
TaqI TCGA 2 cut(s) 206, 272
TasI AATT 1 cut(s) 37
TfiI GAWTC 1 cut(s) 274
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 6 cut(s) 44, 90, 108, 144, 257, 314
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.