Rh3DG321200

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003465
Physical Location & Seq
Reverse (-)
34868395 .. 34882438
14044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG321200.1

Sequence Viewer

Length: 387 bp
ATGGATGAAGGAGAATGGATCGGGTACAATAGTAATGGGTATGGATGGGCCCGGTTGACTGAAGATTTCAGTGGATTGTCATTGGACGAGAACAAGATGGCACAAGCTATCAAGCTGCTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATAGGAAATGGAACGCCTGAAGAAGCAGAACGAGATGCTAAGCTGAACATTATGGGTTTCTTTAAGGAGCTTTCACAGTTTATTGTTAAGGTCGGCCCAATTTTAAGCAAAAGAGTTGGAGGGCACTTTTCTGTACTTGAGCCTTTTAAGCAAATCCTGCTACTGCTGTTGATTCTCAGGCAAACAAGGAAGCAACTAATGAATGTTCTGTTGTCGTTGGGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

6.74

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 81, 198
AfaI GTAC 2 cut(s) 26, 294
AflIII ACRYGT 1 cut(s) 133
AluBI AGCT 5 cut(s) 107, 115, 158, 202, 229
AluI AGCT 5 cut(s) 107, 115, 158, 202, 229
AlwI GGATC 1 cut(s) 26
AoxI GGCC 2 cut(s) 48, 253
ApaI GGGCCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 3 cut(s) 48, 49, 254
AsuC2I CCSGG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 52, 285
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 39, 91
BcnI CCSGG 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 48, 49, 254
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 52
BseGI GGATG 2 cut(s) 10, 50
BseMII CTCAG 1 cut(s) 349
BseSI GKGCMC 2 cut(s) 52, 285
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 50, 255
BsiSI CCGG 1 cut(s) 52
BsnI GGCC 2 cut(s) 50, 255
Bsp120I GGGCCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 52, 285
Bsp143I GATC 1 cut(s) 18
Bsp1720I GCTNAGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 50, 255
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 26
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 198, 335
BstF5I GGATG 2 cut(s) 10, 50
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 307, 316
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 2 cut(s) 52, 285
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 50, 255
BtsCI GGATG 2 cut(s) 10, 50
BtsIMutI CAGTG 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 48, 49, 254
Csp6I GTAC 2 cut(s) 25, 293
CviAII CATG 1 cut(s) 134
CviJI RGCY 8 cut(s) 50, 107, 115, 158, 202, 229, 255, 301
CviKI_1 RGCY 8 cut(s) 50, 107, 115, 158, 202, 229, 255, 301
CviQI GTAC 2 cut(s) 25, 293
DdeI CTNAG 2 cut(s) 198, 335
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 81, 198
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 42, 135, 161, 212
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 2 cut(s) 17, 57
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 2 cut(s) 50, 255
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 331
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 316
HpyF3I CTNAG 2 cut(s) 198, 335
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 65, 189, 322, 329
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 184
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 74, 191
MhlI GDGCHC 2 cut(s) 52, 285
MluCI AATT 2 cut(s) 148, 258
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 1 cut(s) 272
MseI TTAA 4 cut(s) 222, 246, 263, 306
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 307, 316
NciI CCSGG 1 cut(s) 52
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 50
NspI RCATGY 1 cut(s) 137
PciI ACATGT 1 cut(s) 133
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 117
PscI ACATGT 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 50
PspOMI GGGCCC 1 cut(s) 48
PspPI GGNCC 3 cut(s) 48, 49, 254
RsaI GTAC 2 cut(s) 26, 294
RsaNI GTAC 2 cut(s) 25, 293
SaqAI TTAA 4 cut(s) 222, 246, 263, 306
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 3 cut(s) 48, 49, 254
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 2 cut(s) 52, 285
SetI ASST 6 cut(s) 109, 117, 160, 204, 231, 252
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 148, 258
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 237
TasI AATT 2 cut(s) 148, 258
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 4 cut(s) 222, 246, 263, 306
Tru9I TTAA 4 cut(s) 222, 246, 263, 306
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 21, 374
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.