Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 52 |
| AcuI | CTGAAG | 1 cut(s) | 48 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AgsI | TTSAA | 2 cut(s) | 51, 161 |
| AluBI | AGCT | 3 cut(s) | 38, 147, 197 |
| AluI | AGCT | 3 cut(s) | 38, 147, 197 |
| Ama87I | CYCGRG | 1 cut(s) | 238 |
| AoxI | GGCC | 1 cut(s) | 213 |
| ApeKI | GCWGC | 1 cut(s) | 147 |
| ApoI | RAATTY | 1 cut(s) | 52 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 276 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaI | CYCGRG | 1 cut(s) | 238 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| BbvI | GCAGC | 1 cut(s) | 134 |
| BccI | CCATC | 2 cut(s) | 4, 217 |
| BceAI | ACGGC | 2 cut(s) | 48, 228 |
| BglII | AGATCT | 1 cut(s) | 172 |
| BisI | GCNGC | 1 cut(s) | 148 |
| BlpI | GCTNAGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 149 |
| BmeT110I | CYCGRG | 1 cut(s) | 238 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BmsI | GCATC | 1 cut(s) | 7 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 21 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsa29I | ATCGAT | 1 cut(s) | 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| BseCI | ATCGAT | 1 cut(s) | 88 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseXI | GCAGC | 1 cut(s) | 134 |
| BshFI | GGCC | 1 cut(s) | 215 |
| BshVI | ATCGAT | 1 cut(s) | 88 |
| BsiHKCI | CYCGRG | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsnI | GGCC | 1 cut(s) | 215 |
| BsoBI | CYCGRG | 1 cut(s) | 238 |
| Bsp143I | GATC | 2 cut(s) | 85, 172 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 21 |
| BspANI | GGCC | 1 cut(s) | 215 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspDI | ATCGAT | 1 cut(s) | 88 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssMI | GATC | 2 cut(s) | 85, 172 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 21, 57 |
| BstKTI | GATC | 2 cut(s) | 88, 175 |
| BstMBI | GATC | 2 cut(s) | 85, 172 |
| BstV1I | GCAGC | 1 cut(s) | 134 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BstX2I | RGATCY | 1 cut(s) | 172 |
| BstYI | RGATCY | 1 cut(s) | 172 |
| Bsu15I | ATCGAT | 1 cut(s) | 88 |
| BsuRI | GGCC | 1 cut(s) | 215 |
| BsuTUI | ATCGAT | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| ClaI | ATCGAT | 1 cut(s) | 88 |
| CseI | GACGC | 1 cut(s) | 180 |
| CviJI | RGCY | 6 cut(s) | 25, 38, 63, 147, 197, 215 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 38, 63, 147, 197, 215 |
| DdeI | CTNAG | 2 cut(s) | 21, 57 |
| DpnI | GATC | 2 cut(s) | 87, 174 |
| DpnII | GATC | 2 cut(s) | 85, 172 |
| Eco57I | CTGAAG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 1 cut(s) | 238 |
| FaiI | YATR | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 1 cut(s) | 148 |
| GluI | GCNGC | 1 cut(s) | 148 |
| HaeIII | GGCC | 1 cut(s) | 215 |
| HgaI | GACGC | 1 cut(s) | 180 |
| HinfI | GANTC | 3 cut(s) | 68, 250, 285 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 284 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 150 |
| HpyF3I | CTNAG | 2 cut(s) | 21, 57 |
| Kzo9I | GATC | 2 cut(s) | 85, 172 |
| LpnPI | CCDG | 3 cut(s) | 39, 57, 81 |
| Lsp1109I | GCAGC | 1 cut(s) | 134 |
| LweI | GCATC | 1 cut(s) | 7 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 2 cut(s) | 87, 174 |
| MboI | GATC | 2 cut(s) | 85, 172 |
| MboII | GAAGA | 5 cut(s) | 19, 26, 68, 283, 284 |
| MflI | RGATCY | 1 cut(s) | 172 |
| MluCI | AATT | 2 cut(s) | 46, 52 |
| MlyI | GAGTC | 2 cut(s) | 244, 279 |
| MmeI | TCCRAC | 1 cut(s) | 66 |
| MseI | TTAA | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 85, 172 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PaeR7I | CTCGAG | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PkrI | GCNGC | 1 cut(s) | 149 |
| PleI | GAGTC | 2 cut(s) | 244, 279 |
| PpsI | GAGTC | 2 cut(s) | 244, 279 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PspXI | VCTCGAGB | 1 cut(s) | 238 |
| PsuI | RGATCY | 1 cut(s) | 172 |
| SaqAI | TTAA | 1 cut(s) | 179 |
| SatI | GCNGC | 1 cut(s) | 148 |
| Sau3AI | GATC | 2 cut(s) | 85, 172 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| SchI | GAGTC | 2 cut(s) | 244, 279 |
| SetI | ASST | 3 cut(s) | 40, 149, 199 |
| SfaNI | GCATC | 1 cut(s) | 7 |
| Sfr274I | CTCGAG | 1 cut(s) | 238 |
| SlaI | CTCGAG | 1 cut(s) | 238 |
| SmlI | CTYRAG | 2 cut(s) | 218, 238 |
| SmoI | CTYRAG | 2 cut(s) | 218, 238 |
| Sse9I | AATT | 2 cut(s) | 46, 52 |
| TaqI | TCGA | 3 cut(s) | 88, 239, 295 |
| TasI | AATT | 2 cut(s) | 46, 52 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 1 cut(s) | 179 |
| Tru9I | TTAA | 1 cut(s) | 179 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 1 cut(s) | 147 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| XapI | RAATTY | 1 cut(s) | 52 |
| XhoI | CTCGAG | 1 cut(s) | 238 |