Rh7BG407200

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003465
Physical Location & Seq
Forward (+)
45615283 .. 45616279
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG407200.1

Sequence Viewer

Length: 504 bp
ATGCTTAACCTAGCAGCGTCGAGGCCCTCGACACATGCAGCATTGCCCCAAACAGCCAAACTATACCTCGAGATACTCGATCACAACATTGCCCCCAAACTATACCTCGACATAGCGCCTCCAAACCACGACTCGATCTCTCCGAATCACTCTGACTCACTCCATAGCTACCCGACCCCGACTCACTCCACGACCCTAAACCTTAAATCCATTGCCTCTGAAGGCCGGACTCTGGTGCGAATCTTTCGAAGCCCTAAGTCGGAGATTTGTCTTCGAATCTGGTTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCCGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGCAAAACTGTTCTGGTTTTCGTTTGTTTTGTTCTCGGTGAAAACATTGAGTGAGAAGAGTTCTGATAATTCACAAATTGACAGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

6.14

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 2 cut(s) 240, 426
AfiI CCNNNNNNNGG 2 cut(s) 232, 259
AflIII ACRYGT 1 cut(s) 361
AluBI AGCT 5 cut(s) 168, 335, 343, 386, 498
AluI AGCT 5 cut(s) 168, 335, 343, 386, 498
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 23, 223
ApeKI GCWGC 3 cut(s) 14, 38, 498
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 2 cut(s) 247, 274
AvaI CYCGRG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 26, 50, 485
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 3 cut(s) 15, 39, 499
BlsI GCNGC 3 cut(s) 16, 40, 500
Bme1390I CCNGG 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 263
Bpu14I TTCGAA 2 cut(s) 247, 274
BpuMI CCSGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 259
Bse3DI GCAATG 3 cut(s) 41, 87, 210
BseLI CCNNNNNNNGG 2 cut(s) 232, 259
BseMI GCAATG 3 cut(s) 41, 87, 210
BseXI GCAGC 3 cut(s) 26, 50, 485
BshFI GGCC 2 cut(s) 25, 225
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 226, 323
BslI CCNNNNNNNGG 2 cut(s) 232, 259
BsnI GGCC 2 cut(s) 25, 225
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 2 cut(s) 247, 274
Bsp143I GATC 2 cut(s) 79, 135
BspANI GGCC 2 cut(s) 25, 225
BspT104I TTCGAA 2 cut(s) 247, 274
BsrDI GCAATG 3 cut(s) 41, 87, 210
BssMI GATC 2 cut(s) 79, 135
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 1 cut(s) 464
BstBI TTCGAA 2 cut(s) 247, 274
BstDEI CTNAG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 2 cut(s) 82, 138
BstMBI GATC 2 cut(s) 79, 135
BstNSI RCATGY 2 cut(s) 38, 365
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 26, 50, 485
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 25, 225
BtsIMutI CAGTG 1 cut(s) 304
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 6
CviAII CATG 2 cut(s) 35, 362
CviJI RGCY 9 cut(s) 25, 56, 168, 225, 252, 335, 343, 386, 498
CviKI_1 RGCY 9 cut(s) 25, 56, 168, 225, 252, 335, 343, 386, 498
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 81, 137
DpnII GATC 2 cut(s) 79, 135
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 240, 426
Eco88I CYCGRG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 24
FaeI CATG 2 cut(s) 38, 365
FaiI YATR 6 cut(s) 36, 64, 103, 113, 165, 363
FatI CATG 2 cut(s) 34, 361
Fnu4HI GCNGC 3 cut(s) 15, 39, 499
Fsp4HI GCNGC 3 cut(s) 15, 39, 499
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 15, 39, 499
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 25, 225
HapII CCGG 2 cut(s) 226, 323
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 38, 365
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 7 cut(s) 131, 145, 155, 181, 229, 240, 276
HpaII CCGG 2 cut(s) 226, 323
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 6 cut(s) 144, 154, 220, 262, 392, 478
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 38, 365
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 2 cut(s) 79, 135
LpnPI CCDG 6 cut(s) 218, 239, 265, 336, 412, 417
Lsp1109I GCAGC 3 cut(s) 26, 50, 485
MaeI CTAG 1 cut(s) 11
MalI GATC 2 cut(s) 81, 137
MboI GATC 2 cut(s) 79, 135
MboII GAAGA 4 cut(s) 263, 302, 419, 481
MluCI AATT 4 cut(s) 376, 410, 481, 489
MlyI GAGTC 4 cut(s) 125, 149, 175, 223
MmeI TCCRAC 2 cut(s) 240, 291
MnlI CCTC 6 cut(s) 15, 37, 77, 116, 129, 226
MseI TTAA 2 cut(s) 6, 204
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 2 cut(s) 226, 323
MspR9I CCNGG 1 cut(s) 323
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 79, 135
NlaIII CATG 2 cut(s) 38, 365
NspI RCATGY 2 cut(s) 38, 365
NspV TTCGAA 2 cut(s) 247, 274
PaeR7I CTCGAG 1 cut(s) 68
PciI ACATGT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 3 cut(s) 26, 75, 140
PfeI GAWTC 3 cut(s) 145, 240, 276
PkrI GCNGC 3 cut(s) 16, 40, 500
PleI GAGTC 4 cut(s) 125, 149, 175, 223
PpsI GAGTC 4 cut(s) 125, 149, 175, 223
PscI ACATGT 1 cut(s) 361
PspPI GGNCC 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 498
SaqAI TTAA 2 cut(s) 6, 204
SatI GCNGC 3 cut(s) 15, 39, 499
Sau3AI GATC 2 cut(s) 79, 135
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 4 cut(s) 125, 149, 175, 223
ScrFI CCNGG 1 cut(s) 323
SetI ASST 9 cut(s) 12, 69, 108, 170, 204, 337, 345, 388, 500
Sfr274I CTCGAG 1 cut(s) 68
SfuI TTCGAA 2 cut(s) 247, 274
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 4 cut(s) 376, 410, 481, 489
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 423
TaqI TCGA 8 cut(s) 20, 29, 69, 78, 108, 134, 247, 274
TasI AATT 4 cut(s) 376, 410, 481, 489
TfiI GAWTC 3 cut(s) 145, 240, 276
Tru1I TTAA 2 cut(s) 6, 204
Tru9I TTAA 2 cut(s) 6, 204
TscAI CASTG 1 cut(s) 304
TseI GCWGC 3 cut(s) 14, 38, 498
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 376
XceI RCATGY 2 cut(s) 38, 365
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.