Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 106, 318 |
| AcuI | CTGAAG | 1 cut(s) | 156 |
| AflIII | ACRYGT | 1 cut(s) | 91 |
| AgsI | TTSAA | 1 cut(s) | 385 |
| AluBI | AGCT | 4 cut(s) | 65, 73, 116, 226 |
| AluI | AGCT | 4 cut(s) | 65, 73, 116, 226 |
| Alw26I | GTCTC | 1 cut(s) | 398 |
| AoxI | GGCC | 2 cut(s) | 246, 250 |
| ApeKI | GCWGC | 1 cut(s) | 334 |
| ApoI | RAATTY | 2 cut(s) | 106, 318 |
| AspS9I | GGNCC | 1 cut(s) | 251 |
| AsuHPI | GGTGA | 1 cut(s) | 193 |
| BbvI | GCAGC | 1 cut(s) | 321 |
| BcoDI | GTCTC | 1 cut(s) | 398 |
| BfaI | CTAG | 2 cut(s) | 53, 368 |
| BisI | GCNGC | 1 cut(s) | 335 |
| BlsI | GCNGC | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| Bse118I | RCCGGY | 1 cut(s) | 248 |
| BseXI | GCAGC | 1 cut(s) | 321 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshFI | GGCC | 2 cut(s) | 248, 252 |
| BsiSI | CCGG | 1 cut(s) | 249 |
| BsmAI | GTCTC | 1 cut(s) | 398 |
| BsnI | GGCC | 2 cut(s) | 248, 252 |
| BspANI | GGCC | 2 cut(s) | 248, 252 |
| BsrFI | RCCGGY | 1 cut(s) | 248 |
| BssAI | RCCGGY | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 2 cut(s) | 153, 234 |
| BstC8I | GCNNGC | 1 cut(s) | 250 |
| BstMAI | GTCTC | 1 cut(s) | 398 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 304, 340 |
| BstNSI | RCATGY | 3 cut(s) | 95, 343, 347 |
| BstV1I | GCAGC | 1 cut(s) | 321 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 208 |
| BsuRI | GGCC | 2 cut(s) | 248, 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 34 |
| Cac8I | GCNNGC | 1 cut(s) | 250 |
| Cfr10I | RCCGGY | 1 cut(s) | 248 |
| Cfr13I | GGNCC | 1 cut(s) | 251 |
| CviAII | CATG | 3 cut(s) | 92, 340, 344 |
| Eco57I | CTGAAG | 1 cut(s) | 156 |
| EcoT22I | ATGCAT | 1 cut(s) | 345 |
| FaeI | CATG | 3 cut(s) | 95, 343, 347 |
| FaiI | YATR | 7 cut(s) | 93, 290, 328, 330, 341, 345, 355 |
| FatI | CATG | 3 cut(s) | 91, 339, 343 |
| Fnu4HI | GCNGC | 1 cut(s) | 335 |
| FseI | GGCCGGCC | 1 cut(s) | 252 |
| Fsp4HI | GCNGC | 1 cut(s) | 335 |
| FspBI | CTAG | 2 cut(s) | 53, 368 |
| GluI | GCNGC | 1 cut(s) | 335 |
| HaeIII | GGCC | 2 cut(s) | 248, 252 |
| HapII | CCGG | 1 cut(s) | 249 |
| Hin1II | CATG | 3 cut(s) | 95, 343, 347 |
| HpaII | CCGG | 1 cut(s) | 249 |
| HphI | GGTGA | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 2 cut(s) | 153, 234 |
| HpyCH4V | TGCA | 2 cut(s) | 337, 343 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 304, 340 |
| Hsp92II | CATG | 3 cut(s) | 95, 343, 347 |
| KroI | GCCGGC | 1 cut(s) | 248 |
| KroNI | GCCGGC | 1 cut(s) | 250 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| LpnPI | CCDG | 4 cut(s) | 142, 147, 214, 262 |
| Lsp1109I | GCAGC | 1 cut(s) | 321 |
| MaeI | CTAG | 2 cut(s) | 53, 368 |
| MboII | GAAGA | 2 cut(s) | 32, 149 |
| MluCI | AATT | 5 cut(s) | 106, 140, 255, 281, 318 |
| MmeI | TCCRAC | 2 cut(s) | 21, 253 |
| MnlI | CCTC | 1 cut(s) | 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 345 |
| MroNI | GCCGGC | 1 cut(s) | 248 |
| MseI | TTAA | 4 cut(s) | 219, 243, 260, 303 |
| MslI | CAYNNNNRTG | 1 cut(s) | 342 |
| MspI | CCGG | 1 cut(s) | 249 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 304, 340 |
| NaeI | GCCGGC | 1 cut(s) | 250 |
| NgoMIV | GCCGGC | 1 cut(s) | 248 |
| NlaIII | CATG | 3 cut(s) | 95, 343, 347 |
| NsiI | ATGCAT | 1 cut(s) | 345 |
| NspI | RCATGY | 3 cut(s) | 95, 343, 347 |
| PciI | ACATGT | 1 cut(s) | 91 |
| PdiI | GCCGGC | 1 cut(s) | 250 |
| PkrI | GCNGC | 1 cut(s) | 336 |
| PscI | ACATGT | 1 cut(s) | 91 |
| PspPI | GGNCC | 1 cut(s) | 251 |
| RigI | GGCCGGCC | 1 cut(s) | 252 |
| RseI | CAYNNNNRTG | 1 cut(s) | 342 |
| SaqAI | TTAA | 4 cut(s) | 219, 243, 260, 303 |
| SatI | GCNGC | 1 cut(s) | 335 |
| Sau96I | GGNCC | 1 cut(s) | 251 |
| SetI | ASST | 6 cut(s) | 54, 67, 75, 118, 228, 373 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 5 cut(s) | 106, 140, 255, 281, 318 |
| SspMI | CTAG | 2 cut(s) | 53, 368 |
| TaaI | ACNGT | 2 cut(s) | 153, 234 |
| TasI | AATT | 5 cut(s) | 106, 140, 255, 281, 318 |
| Tru1I | TTAA | 4 cut(s) | 219, 243, 260, 303 |
| Tru9I | TTAA | 4 cut(s) | 219, 243, 260, 303 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TseI | GCWGC | 1 cut(s) | 334 |
| TspGWI | ACGGA | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 34 |
| XapI | RAATTY | 2 cut(s) | 106, 318 |
| XceI | RCATGY | 3 cut(s) | 95, 343, 347 |
| XspI | CTAG | 2 cut(s) | 53, 368 |
| Zsp2I | ATGCAT | 1 cut(s) | 345 |