Rh2DG474800

Retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003465
Physical Location & Seq
Forward (+)
68698956 .. 68727886
28931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG474800.1

Sequence Viewer

Length: 366 bp
ATGCACATCCCCAGCCTAGCTCTGCAGCCACGCACACAGCGTCCCCGCGCCAGCAGCCTGTGCCCCCATCCATCGCTGCTGCAACAGCCCACCCGGCCCGCCTGCGCAACCCAACCGGCCCTCCTGCCCACCACCGTAGCCCAGCCACTTGAACGCCGGCGGCCAGACCCCTTGTCAGCAATTGCTTCCAGCATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCAACCCAATTTTAAGTAATCTGTATGGTGTAGATTGGGAGAGCAAACTTGAGGAGAACAAAATTTTGATATATGTGCTACACATGCATGTTGGGTTATATTGTTATTGGCTAGGGTGTATTGGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

8.8

Isoelectric Point (pI)

66.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 46, 99, 160
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 297
AgsI TTSAA 1 cut(s) 152
AhdI GACNNNNNGTC 1 cut(s) 172
AluBI AGCT 2 cut(s) 20, 214
AluI AGCT 2 cut(s) 20, 214
AoxI GGCC 5 cut(s) 95, 117, 161, 234, 359
ApaI GGGCCC 1 cut(s) 363
ApeKI GCWGC 4 cut(s) 25, 54, 76, 79
ApoI RAATTY 1 cut(s) 297
AspLEI GCGC 2 cut(s) 50, 107
AspS9I GGNCC 4 cut(s) 96, 118, 359, 360
AsuC2I CCSGG 1 cut(s) 94
BaeGI GKGCMC 2 cut(s) 65, 363
BanII GRGCYC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 37, 63, 66, 66
BccI CCATC 2 cut(s) 75, 79
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 2 cut(s) 17, 347
BfmI CTRYAG 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 5 cut(s) 26, 55, 77, 80, 161
BlsI GCNGC 5 cut(s) 27, 56, 78, 81, 162
Bme1390I CCNGG 1 cut(s) 94
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 4 cut(s) 96, 118, 359, 360
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse118I RCCGGY 2 cut(s) 115, 156
BseGI GGATG 2 cut(s) 6, 67
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 65, 363
BseXI GCAGC 4 cut(s) 37, 63, 66, 66
BseYI CCCAGC 2 cut(s) 11, 141
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 97, 119, 163, 236, 361
BsiSI CCGG 3 cut(s) 94, 116, 157
BslFI GGGAC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 5 cut(s) 97, 119, 163, 236, 361
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 65, 363
BspACI CCGC 3 cut(s) 46, 99, 160
BspANI GGCC 5 cut(s) 97, 119, 163, 236, 361
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 27
BsrFI RCCGGY 2 cut(s) 115, 156
BssAI RCCGGY 2 cut(s) 115, 156
Bst4CI ACNGT 2 cut(s) 136, 222
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 52, 99, 103, 158
BstF5I GGATG 2 cut(s) 6, 67
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 107
BstMWI GCNNNNNNNGC 5 cut(s) 54, 60, 85, 94, 319
BstNSI RCATGY 2 cut(s) 322, 326
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 2 cut(s) 65, 363
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 37, 63, 66, 66
BstXI CCANNNNNNTGG 1 cut(s) 196
BsuRI GGCC 5 cut(s) 97, 119, 163, 236, 361
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 6, 67
Cac8I GCNNGC 4 cut(s) 52, 99, 103, 158
CfoI GCGC 2 cut(s) 50, 107
Cfr10I RCCGGY 2 cut(s) 115, 156
Cfr13I GGNCC 4 cut(s) 96, 118, 359, 360
CseI GACGC 1 cut(s) 29
CviAII CATG 2 cut(s) 319, 323
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 2 cut(s) 322, 326
FaiI YATR 6 cut(s) 261, 307, 309, 320, 324, 334
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 318, 322
FauI CCCGC 2 cut(s) 53, 106
Fnu4HI GCNGC 5 cut(s) 26, 55, 77, 80, 161
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 5 cut(s) 26, 55, 77, 80, 161
FspBI CTAG 2 cut(s) 17, 347
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 49, 106
GluI GCNGC 5 cut(s) 26, 55, 77, 80, 161
GsaI CCCAGC 2 cut(s) 15, 145
HaeIII GGCC 5 cut(s) 97, 119, 163, 236, 361
HapII CCGG 3 cut(s) 94, 116, 157
HgaI GACGC 1 cut(s) 29
HhaI GCGC 2 cut(s) 50, 107
Hin1II CATG 2 cut(s) 322, 326
Hin6I GCGC 2 cut(s) 48, 105
HinP1I GCGC 2 cut(s) 48, 105
HpaII CCGG 3 cut(s) 94, 116, 157
HpyCH4III ACNGT 2 cut(s) 136, 222
HpyCH4V TGCA 4 cut(s) 4, 25, 82, 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 60, 85, 94, 319
Hsp92II CATG 2 cut(s) 322, 326
HspAI GCGC 2 cut(s) 48, 105
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 4 cut(s) 37, 63, 66, 66
MaeI CTAG 2 cut(s) 17, 347
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 65, 363
MluCI AATT 3 cut(s) 180, 243, 297
MnlI CCTC 2 cut(s) 131, 280
Mph1103I ATGCAT 1 cut(s) 324
MreI CGCCGGCG 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 156
MseI TTAA 3 cut(s) 207, 231, 248
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 3 cut(s) 94, 116, 157
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 1 cut(s) 180
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 5 cut(s) 54, 60, 85, 94, 319
NaeI GCCGGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 94
NgoMIV GCCGGC 1 cut(s) 156
NlaIII CATG 2 cut(s) 322, 326
NlaIV GGNNCC 1 cut(s) 361
NsbI TGCGCA 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 2 cut(s) 322, 326
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PdiI GCCGGC 1 cut(s) 158
PkrI GCNGC 5 cut(s) 27, 56, 78, 81, 162
PspFI CCCAGC 2 cut(s) 11, 141
PspN4I GGNNCC 1 cut(s) 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 4 cut(s) 96, 118, 359, 360
PstI CTGCAG 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 3 cut(s) 207, 231, 248
SatI GCNGC 5 cut(s) 26, 55, 77, 80, 161
Sau96I GGNCC 4 cut(s) 96, 118, 359, 360
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 65, 363
SetI ASST 2 cut(s) 22, 216
SfcI CTRYAG 1 cut(s) 23
SgrAI CRCCGGYG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 180, 243, 297
SsiI CCGC 3 cut(s) 46, 99, 160
SspMI CTAG 2 cut(s) 17, 347
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 136, 222
TasI AATT 3 cut(s) 180, 243, 297
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 3 cut(s) 207, 231, 248
Tru9I TTAA 3 cut(s) 207, 231, 248
TseI GCWGC 4 cut(s) 25, 54, 76, 79
XapI RAATTY 1 cut(s) 297
XceI RCATGY 2 cut(s) 322, 326
XspI CTAG 2 cut(s) 17, 347
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.