Retinoblastoma-related
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28521 |
| malus_domestica | MD05G1190300.v1.1 |
| pyrus_communis | pycom05g17150 pycom05g17590 |
| rosa_roxburghii | Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130 |
| rosa_rugosa | Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000 |
| rosa_samantha | Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 168 |
| AcsI | RAATTY | 1 cut(s) | 67 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 97 |
| AluBI | AGCT | 1 cut(s) | 182 |
| AluI | AGCT | 1 cut(s) | 182 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 77, 92 |
| ApeKI | GCWGC | 2 cut(s) | 182, 185 |
| ApoI | RAATTY | 1 cut(s) | 67 |
| AsuII | TTCGAA | 1 cut(s) | 65 |
| BbvI | GCAGC | 2 cut(s) | 169, 172 |
| BisI | GCNGC | 2 cut(s) | 183, 186 |
| BlsI | GCNGC | 2 cut(s) | 184, 187 |
| BmsI | GCATC | 2 cut(s) | 62, 150 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| Bpu14I | TTCGAA | 1 cut(s) | 65 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 97 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| BseGI | GGATG | 1 cut(s) | 53 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BseXI | GCAGC | 2 cut(s) | 169, 172 |
| BsiSI | CCGG | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 97 |
| Bsp119I | TTCGAA | 1 cut(s) | 65 |
| BspACI | CCGC | 1 cut(s) | 168 |
| BspT104I | TTCGAA | 1 cut(s) | 65 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 65 |
| BstDEI | CTNAG | 1 cut(s) | 162 |
| BstF5I | GGATG | 1 cut(s) | 53 |
| BstV1I | GCAGC | 2 cut(s) | 169, 172 |
| BtsCI | GGATG | 1 cut(s) | 53 |
| CaiI | CAGNNNCTG | 2 cut(s) | 77, 92 |
| CviJI | RGCY | 4 cut(s) | 40, 101, 182, 196 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 101, 182, 196 |
| DdeI | CTNAG | 1 cut(s) | 162 |
| EcoRI | GAATTC | 1 cut(s) | 67 |
| FaiI | YATR | 4 cut(s) | 146, 148, 150, 191 |
| Fnu4HI | GCNGC | 2 cut(s) | 183, 186 |
| FokI | GGATG | 1 cut(s) | 40 |
| Fsp4HI | GCNGC | 2 cut(s) | 183, 186 |
| GluI | GCNGC | 2 cut(s) | 183, 186 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HapII | CCGG | 1 cut(s) | 41 |
| HinfI | GANTC | 2 cut(s) | 4, 83 |
| HpaII | CCGG | 1 cut(s) | 41 |
| Hpy166II | GTNNAC | 1 cut(s) | 8 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 1 cut(s) | 72 |
| Hpy8I | GTNNAC | 1 cut(s) | 8 |
| HpyCH4V | TGCA | 3 cut(s) | 53, 120, 141 |
| HpyF3I | CTNAG | 1 cut(s) | 162 |
| LpnPI | CCDG | 4 cut(s) | 54, 57, 63, 105 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 172 |
| LweI | GCATC | 2 cut(s) | 62, 150 |
| MboII | GAAGA | 1 cut(s) | 41 |
| MluCI | AATT | 3 cut(s) | 61, 67, 112 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MnlI | CCTC | 1 cut(s) | 37 |
| MspI | CCGG | 1 cut(s) | 41 |
| NspV | TTCGAA | 1 cut(s) | 65 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PflFI | GACNNNGTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 2 cut(s) | 184, 187 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| PstNI | CAGNNNCTG | 2 cut(s) | 77, 92 |
| PsyI | GACNNNGTC | 1 cut(s) | 92 |
| SatI | GCNGC | 2 cut(s) | 183, 186 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SetI | ASST | 2 cut(s) | 48, 184 |
| SfaNI | GCATC | 2 cut(s) | 62, 150 |
| SfuI | TTCGAA | 1 cut(s) | 65 |
| SgeI | CNNG | 9 cut(s) | 23, 53, 84, 90, 104, 109, 114, 133, 191 |
| Sse9I | AATT | 3 cut(s) | 61, 67, 112 |
| SsiI | CCGC | 1 cut(s) | 168 |
| TaqI | TCGA | 2 cut(s) | 65, 103 |
| TasI | AATT | 3 cut(s) | 61, 67, 112 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| TseI | GCWGC | 2 cut(s) | 182, 185 |
| Tth111I | GACNNNGTC | 1 cut(s) | 92 |
| XapI | RAATTY | 1 cut(s) | 67 |