Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003465

Physical Location & Seq

Genomic Coordinates Reverse (-)

41184893 .. 41188201

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG353900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTTTTGATTTCGGGTTCTTCACTTTTGATTTCAGGTGTTGAGTTCGGGTTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCCGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGCAAAACAGTTCTGGTTTTCGTTTGTTTTGTTCTCGGTGAAAACATTGATTGCTTCCAGCATTGTGGATTTCTTTAAGGAGCTTCCACAGCTTCCACAGCATTGTGGGCCATCACATAGAGAGAATAATGGGGATGATGAGAGGATAGAGAACTTGGCCAGGAGGTCAAATGACCAATCTGAACAATGTTGTGGGAGTAATGAGATATGCTCTTATGAAGTTCTTTGGGATGGTGAATGTGATACTGATTCAAAATCGCTTCTCAATAAGTTTGCAAGAAAGGCGTCATTCAAACTTTCATGGTGGTGCAAAGGTGACCAGAGTGACCAGCACAAGCATGACATTGTCTCTTTTGAAAGAGGAAACATAATAACTGCAGAGCGCAGCAGTAAACAGATGAATTTACTCTATCTAAACATTCACTTTTATTTCAGATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NAD_kinase

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

5.24

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28521
malus_domestica	MD05G1190300.v1.1
pyrus_communis	pycom05g17150 pycom05g17590
rosa_roxburghii	Rroxscaffold_2G00110410 Rroxscaffold_3G00224390 Rroxscaffold_3G00238930 Rroxscaffold_4G00318550 Rroxscaffold_5G00344200 Rroxscaffold_5G00364850 Rroxscaffold_5G00373450 Rroxscaffold_6G00412130
rosa_rugosa	Rorug02G0399400 Rorug05G0428100 Rorug07G0278900 Rorug07G0279000
rosa_samantha	Rh1BG236000 Rh2BG465700 Rh2BG474700 Rh2DG116100 Rh2DG474800 Rh2DG483400 Rh3AG115100 Rh3BG012900 Rh3DG013600 Rh3DG321200 Rh4AG084800 Rh5BG232000 Rh5BG504000 Rh5CG353900 Rh5CG527500 Rh6BG199800 Rh7AG402200 Rh7BG341600 Rh7BG407200 Rh7BG407300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	145, 583
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	435, 475, 539
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	5 cut(s)	104, 112, 155, 265, 274
AluI	AGCT	5 cut(s)	104, 112, 155, 265, 274
Alw26I	GTCTC	1 cut(s)	535
AoxI	GGCC	2 cut(s)	290, 339
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	2 cut(s)	145, 583
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	232, 428, 509
BalI	TGGCCA	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	2 cut(s)	301, 407
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	535
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	1 cut(s)	568
BlsI	GCNGC	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	92, 343
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	92, 343
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	322, 418
BseXI	GCAGC	1 cut(s)	579
BshFI	GGCC	2 cut(s)	292, 341
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	292, 341
BspANI	GGCC	2 cut(s)	292, 341
BspMAI	CTGCAG	1 cut(s)	562
BssNI	GRCGYC	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	467
BstEII	GGTNACC	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	322, 418
BstHHI	GCGC	1 cut(s)	567
BstMAI	GTCTC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 280, 289, 464
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	90, 341
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	579
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	292, 341
BtsCI	GGATG	2 cut(s)	322, 418
BtsIMutI	CAGTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	456
CviAII	CATG	3 cut(s)	131, 483, 521
CviJI	RGCY	7 cut(s)	104, 112, 155, 265, 274, 292, 341
CviKI_1	RGCY	7 cut(s)	104, 112, 155, 265, 274, 292, 341
EaeI	YGGCCR	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	134, 486, 524
FaiI	YATR	7 cut(s)	132, 300, 391, 399, 484, 522, 551
FatI	CATG	3 cut(s)	130, 482, 520
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	2 cut(s)	329, 425
Fsp4HI	GCNGC	1 cut(s)	568
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	292, 341
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	134, 486, 524
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	232, 428, 509
Hpy166II	GTNNAC	2 cut(s)	54, 575
Hpy188I	TCNGA	3 cut(s)	161, 364, 617
Hpy8I	GTNNAC	2 cut(s)	54, 575
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	458, 492, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 280, 289, 464
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	134, 486, 524
HspAI	GCGC	1 cut(s)	565
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	21, 105, 181, 186, 253, 328, 355, 515, 524
Lsp1109I	GCAGC	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	497, 506
MboII	GAAGA	3 cut(s)	12, 71, 188
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	3 cut(s)	145, 179, 583
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	318, 339, 536
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	487, 519
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	92, 343
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	271, 280, 289, 464
NciI	CCSGG	1 cut(s)	92
NlaIII	CATG	3 cut(s)	134, 486, 524
NmuCI	GTSAC	2 cut(s)	497, 506
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	569
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	341
PspEI	GGTNACC	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	562
PsyI	GACNNNGTC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	487, 519
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	568
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	92, 343
SetI	ASST	8 cut(s)	40, 106, 114, 157, 267, 276, 350, 499
SfcI	CTRYAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	487, 519
Sse9I	AATT	3 cut(s)	145, 179, 583
StyD4I	CCNGG	2 cut(s)	90, 341
TaaI	ACNGT	1 cut(s)	192
TasI	AATT	3 cut(s)	145, 179, 583
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	497, 506
TseI	GCWGC	1 cut(s)	567
Tsp45I	GTSAC	2 cut(s)	497, 506
TspDTI	ATGAA	3 cut(s)	414, 471, 596
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	527
XapI	RAATTY	2 cut(s)	145, 583
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.