FvH4_3g34360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002864
Physical Location & Seq
Forward (+)
29840930 .. 29842828
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34360.t1

Sequence Viewer

Length: 717 bp
ATGGGGAGATCCTCATCCGGGAAGGGCAAGAAAGTTGAAGAACCACCAGCACCAGCGGAGCCGCCGGTCATCCTTCGATGGCAAGATCTGCCCGAAGATGATCCGGCCAGAGATATGATTGTTATTGCCCCCGAAGATTATATGCCCTCGCTTGGGAAAGGGAAAGGCAAAGGCAAAGGGAAAAGGAATGAGAAGGAGACTGAGAAACCAAAAGTGCAAGGGAAAAGGAAGAAGGCAGAAGGACCACCATTGGCTAATTACATCAAAATAGGTGATCTTGCTCTGGCCTGTAAGATGTGTCCTAATCCAGATTGGCACCCGACTTTTCAGTGCCCCAACCTCACTCCTGGGCTCAAGGAAAGGCTAAAAGAAGCAAGACTCAGGGGTGGAACATTTAGGGCTTTCCACCCTGATGATCACATGTATTGTCATGTTTGTTTGTCAAAAGACCACTGGTCTTCACAATGCAAGTACCGGATCGAACTTCCAGCACATGCAAAAGTTGGCCCTCTTGCTGAAATACATTGTCTGTGTTGTGGTGAGGTGAGCCCCCACCCTGGTGAGCCTGGTGTCGACTGGAAAGCAAGAGCTGTTCTCAAGGCTTCTTGTATGTTAGGTGACCCCAACATGTTAAAGAGGGCAGATGCCGCCGGTGGCACTAAGGCAAGTACATCAGCAGGCGCATCCAATGGCACTGTCGTGAAGGCAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.74

Weight (kDa)

9.11

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 573
AciI CCGC 3 cut(s) 56, 62, 648
AclWI GGATC 3 cut(s) 3, 95, 485
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 2 cut(s) 473, 670
AfiI CCNNNNNNNGG 4 cut(s) 18, 152, 153, 557
AflIII ACRYGT 2 cut(s) 420, 627
AgsI TTSAA 1 cut(s) 38
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 3 cut(s) 346, 556, 565
AleI CACNNNNGTG 2 cut(s) 558, 698
AluBI AGCT 1 cut(s) 590
AluI AGCT 1 cut(s) 590
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 3, 95, 485
AoxI GGCC 3 cut(s) 105, 285, 505
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 242, 506
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 5 cut(s) 284, 551, 556, 572, 629
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 2 cut(s) 354, 551
BbsI GAAGAC 1 cut(s) 450
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 348, 558, 567
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 191
BglII AGATCT 1 cut(s) 85
BisI GCNGC 2 cut(s) 62, 648
BlsI GCNGC 2 cut(s) 63, 649
Bme1390I CCNGG 4 cut(s) 19, 348, 558, 567
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 242, 506
BmiI GGNNCC 2 cut(s) 60, 317
BmrFI CCNGG 4 cut(s) 19, 348, 558, 567
BmsI GCATC 2 cut(s) 634, 692
BpiI GAAGAC 1 cut(s) 450
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpuEI CTTGAG 2 cut(s) 338, 581
BpuMI CCSGG 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 347, 556
BsaWI WCCGGW 1 cut(s) 474
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 152, 153, 557
Bse118I RCCGGY 2 cut(s) 64, 650
Bse1I ACTGG 2 cut(s) 458, 581
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 3 cut(s) 348, 558, 567
BseDI CCNNGG 2 cut(s) 347, 556
BseGI GGATG 3 cut(s) 14, 69, 683
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 4 cut(s) 18, 152, 153, 557
BseMII CTCAG 2 cut(s) 192, 394
BseNI ACTGG 2 cut(s) 458, 581
BseSI GKGCMC 1 cut(s) 335
BshFI GGCC 3 cut(s) 107, 287, 507
BshNI GGYRCC 1 cut(s) 315
BsiSI CCGG 5 cut(s) 18, 65, 104, 475, 651
BslI CCNNNNNNNGG 4 cut(s) 18, 152, 153, 557
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 3 cut(s) 107, 287, 507
Bsp1286I GDGCHC 3 cut(s) 335, 354, 551
Bsp143I GATC 6 cut(s) 8, 85, 100, 274, 415, 477
BspACI CCGC 3 cut(s) 56, 62, 648
BspANI GGCC 3 cut(s) 107, 287, 507
BspCNI CTCAG 2 cut(s) 193, 393
BspLI GGNNCC 2 cut(s) 60, 317
BspPI GGATC 3 cut(s) 3, 95, 485
BspT107I GGYRCC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 64, 650
BsrI ACTGG 2 cut(s) 458, 581
BssAI RCCGGY 2 cut(s) 64, 650
BssECI CCNNGG 2 cut(s) 347, 556
BssMI GATC 6 cut(s) 8, 85, 100, 274, 415, 477
Bst2UI CCWGG 3 cut(s) 348, 558, 567
Bst4CI ACNGT 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 3 cut(s) 201, 380, 660
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 3 cut(s) 14, 69, 683
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 6 cut(s) 11, 88, 103, 277, 418, 480
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 8, 85, 100, 274, 415, 477
BstMWI GCNNNNNNNGC 2 cut(s) 88, 647
BstNI CCWGG 3 cut(s) 348, 558, 567
BstNSI RCATGY 3 cut(s) 424, 497, 631
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 17, 346, 556, 565
BstSLI GKGCMC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 2 cut(s) 8, 85
BstYI RGATCY 2 cut(s) 8, 85
BsuRI GGCC 3 cut(s) 107, 287, 507
BtsCI GGATG 3 cut(s) 14, 69, 683
BtsIMutI CAGTG 3 cut(s) 335, 451, 693
Cac8I GCNNGC 1 cut(s) 679
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 2 cut(s) 64, 650
Cfr13I GGNCC 2 cut(s) 242, 506
Csp6I GTAC 2 cut(s) 472, 669
CviAII CATG 4 cut(s) 421, 431, 494, 628
CviQI GTAC 2 cut(s) 472, 669
DdeI CTNAG 3 cut(s) 201, 380, 660
DpnI GATC 6 cut(s) 10, 87, 102, 276, 417, 479
DpnII GATC 6 cut(s) 8, 85, 100, 274, 415, 477
DriI GACNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 354, 551
Eco47I GGWCC 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 346, 556, 565
EcoT38I GRGCYC 2 cut(s) 354, 551
FaeI CATG 4 cut(s) 424, 434, 497, 631
FaiI YATR 8 cut(s) 116, 141, 143, 422, 432, 495, 611, 629
FatI CATG 4 cut(s) 420, 430, 493, 627
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 2 cut(s) 62, 648
FokI GGATG 2 cut(s) 56, 670
FriOI GRGCYC 2 cut(s) 354, 551
Fsp4HI GCNGC 2 cut(s) 62, 648
GlaI GCGC 1 cut(s) 682
GluI GCNGC 2 cut(s) 62, 648
HaeIII GGCC 3 cut(s) 107, 287, 507
HapII CCGG 5 cut(s) 18, 65, 104, 475, 651
HhaI GCGC 1 cut(s) 683
Hin1II CATG 4 cut(s) 424, 434, 497, 631
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 1 cut(s) 378
HpaII CCGG 5 cut(s) 18, 65, 104, 475, 651
HphI GGTGA 5 cut(s) 284, 551, 556, 572, 629
Hpy166II GTNNAC 1 cut(s) 574
Hpy188III TCNNGA 2 cut(s) 308, 700
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 6 cut(s) 16, 83, 187, 226, 233, 697
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4V TGCA 3 cut(s) 217, 468, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 647
HpyF3I CTNAG 3 cut(s) 201, 380, 660
Hsp92II CATG 4 cut(s) 424, 434, 497, 631
HspAI GCGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 8, 85, 100, 274, 415, 477
LmnI GCTCC 1 cut(s) 58
LweI GCATC 2 cut(s) 634, 692
MaeIII GTNAC 1 cut(s) 617
MalI GATC 6 cut(s) 10, 87, 102, 276, 417, 479
MboI GATC 6 cut(s) 8, 85, 100, 274, 415, 477
MboII GAAGA 5 cut(s) 50, 107, 146, 241, 450
MflI RGATCY 2 cut(s) 8, 85
MhlI GDGCHC 3 cut(s) 335, 354, 551
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 6 cut(s) 22, 157, 350, 519, 535, 630
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 3 cut(s) 411, 558, 698
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 5 cut(s) 18, 65, 104, 475, 651
MspR9I CCNGG 4 cut(s) 19, 348, 558, 567
MvaI CCWGG 3 cut(s) 348, 558, 567
MwoI GCNNNNNNNGC 2 cut(s) 88, 647
NciI CCSGG 1 cut(s) 19
NdeII GATC 6 cut(s) 8, 85, 100, 274, 415, 477
NlaIII CATG 4 cut(s) 424, 434, 497, 631
NlaIV GGNNCC 2 cut(s) 60, 317
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 3 cut(s) 424, 497, 631
OliI CACNNNNGTG 2 cut(s) 558, 698
PciI ACATGT 2 cut(s) 420, 627
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 2 cut(s) 63, 649
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PscI ACATGT 2 cut(s) 420, 627
Psp6I CCWGG 3 cut(s) 346, 556, 565
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 3 cut(s) 346, 556, 565
PspN4I GGNNCC 2 cut(s) 60, 317
PspPI GGNCC 2 cut(s) 242, 506
PsuI RGATCY 2 cut(s) 8, 85
RsaI GTAC 2 cut(s) 473, 670
RsaNI GTAC 2 cut(s) 472, 669
RseI CAYNNNNRTG 3 cut(s) 411, 558, 698
SalI GTCGAC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 2 cut(s) 62, 648
Sau3AI GATC 6 cut(s) 8, 85, 100, 274, 415, 477
Sau96I GGNCC 2 cut(s) 242, 506
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 4 cut(s) 19, 348, 558, 567
SduI GDGCHC 3 cut(s) 335, 354, 551
SetI ASST 5 cut(s) 274, 342, 546, 592, 619
SfaNI GCATC 2 cut(s) 634, 692
SgrAI CRCCGGYG 1 cut(s) 650
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 3 cut(s) 411, 558, 698
SmlI CTYRAG 2 cut(s) 353, 596
SmoI CTYRAG 2 cut(s) 353, 596
Sse9I AATT 1 cut(s) 256
SsiI CCGC 3 cut(s) 56, 62, 648
StyD4I CCNGG 4 cut(s) 17, 346, 556, 565
TaaI ACNGT 1 cut(s) 697
TaqI TCGA 3 cut(s) 76, 480, 573
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 64, 650
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 3 cut(s) 335, 458, 700
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspRI CASTG 3 cut(s) 335, 458, 700
VpaK11BI GGWCC 1 cut(s) 242
XceI RCATGY 3 cut(s) 424, 497, 631
XmiI GTMKAC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.