Rw0G004480

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00168
OG0002864
Physical Location & Seq
Forward (+)
237528 .. 239052
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004480.1

Sequence Viewer

Length: 681 bp
ATGGGGAGATCATCCAAAAAGGGCCAGAAAGTTGAAGAACCATCCGAAGTTGAAGAATCATCCGTGCCACCGGTCATCCTCCGATGGCAAGATCTGAACCGGAGCGATTTGCATGAAAACGAGCTGATTATGATGGCTCCCGAAGACTATAGTCACTATACCCCTCCTCGTGGGAAAGGGAAGGGGAAAGGGAAGGGGAAGGGGAAGGGGAAGGGGGAAGGGAAAGCACAGGTGAGCGATGATAAGGCAAAAGGACCACCATTGGTTAATTACATCTTAATGAGTGAATATTTAATGGATTGTAAGATGTGTCGTCCTAATCCAGATTGGCACCGGACTTTTCAGTGCCCCAACCTCACTCCTGAGCTCAAGGAAATGCTAAAAGAAGATAGAAGCAAGTTTGGAACATGTAGGCCTCTTCGCCCTGAGGACATGGGTTGTCATATATGTCTGAAGAGAGACCACTGGCCTATATCATGCCCCTACCAGCTCGTATATCCTCCGGGTGCACCTGTTGGCCCTTTTGCTGAGATAGTTTGTTTGTGTTGTGGTGAGGAGAAACCCCACCCTGGTGAGCCTGGTGTTGACTGGAAAGCAAGAGCCATTCTCAAGATTTCTCCAACTTATCCCAGTTTGAACTCATATGCAGCAGTGGATGCAGCTGATGGCGCAAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

7.52

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 170, 569
AflIII ACRYGT 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 35, 53, 637
AjnI CCWGG 2 cut(s) 568, 577
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 4 cut(s) 124, 367, 490, 662
AluI AGCT 4 cut(s) 124, 367, 490, 662
Alw21I GWGCWC 2 cut(s) 369, 511
Alw26I GTCTC 1 cut(s) 453
Alw44I GTGCAC 1 cut(s) 507
AoxI GGCC 4 cut(s) 22, 413, 467, 517
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 647, 659
AsiGI ACCGGT 1 cut(s) 70
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 3 cut(s) 22, 254, 518
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 3 cut(s) 244, 563, 584
AvaII GGWCC 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 426
BaeGI GKGCMC 2 cut(s) 350, 511
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 369
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 369, 511
BbvI GCAGC 2 cut(s) 659, 671
BccI CCATC 4 cut(s) 49, 78, 127, 659
BciT130I CCWGG 2 cut(s) 570, 579
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 148
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 648, 660
BlsI GCNGC 2 cut(s) 649, 661
Bme1390I CCNGG 3 cut(s) 504, 570, 579
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 22, 254, 518
BmiI GGNNCC 2 cut(s) 138, 332
BmrFI CCNGG 3 cut(s) 504, 570, 579
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 624
BoxI GACNNNNGTC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 591, 623
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 353, 593
BpuMI CCSGG 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 3 cut(s) 70, 99, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 569
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 3 cut(s) 470, 593, 630
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 570, 579
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 5 cut(s) 11, 41, 59, 75, 661
BseLI CCNNNNNNNGG 2 cut(s) 170, 569
BseMII CTCAG 3 cut(s) 354, 417, 519
BseNI ACTGG 3 cut(s) 470, 593, 630
BseRI GAGGAG 2 cut(s) 156, 569
BseSI GKGCMC 2 cut(s) 350, 511
BseXI GCAGC 2 cut(s) 659, 671
BshFI GGCC 4 cut(s) 24, 415, 469, 519
BshNI GGYRCC 1 cut(s) 330
BshTI ACCGGT 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 369, 511
BsiSI CCGG 4 cut(s) 71, 100, 334, 503
BslI CCNNNNNNNGG 2 cut(s) 170, 569
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 4 cut(s) 24, 415, 469, 519
Bso31I GGTCTC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 350, 369, 511
Bsp143I GATC 2 cut(s) 8, 91
BspANI GGCC 4 cut(s) 24, 415, 469, 519
BspCNI CTCAG 3 cut(s) 355, 418, 520
BspLI GGNNCC 2 cut(s) 138, 332
BspT107I GGYRCC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 3 cut(s) 470, 593, 630
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 2 cut(s) 8, 91
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 570, 579
Bst6I CTCTTC 2 cut(s) 423, 449
BstAPI GCANNNNNTGC 1 cut(s) 656
BstDEI CTNAG 3 cut(s) 363, 426, 528
BstF5I GGATG 5 cut(s) 11, 41, 59, 75, 661
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 2 cut(s) 11, 94
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 8, 91
BstMWI GCNNNNNNNGC 2 cut(s) 656, 668
BstNI CCWGG 2 cut(s) 570, 579
BstNSI RCATGY 1 cut(s) 411
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 3 cut(s) 502, 568, 577
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 350, 511
BstV1I GCAGC 2 cut(s) 659, 671
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 4 cut(s) 24, 415, 469, 519
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 5 cut(s) 11, 41, 59, 75, 661
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 3 cut(s) 350, 463, 657
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 22, 254, 518
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 4 cut(s) 113, 408, 433, 477
DdeI CTNAG 3 cut(s) 363, 426, 528
DpnI GATC 2 cut(s) 10, 93
DpnII GATC 2 cut(s) 8, 91
Eam1104I CTCTTC 2 cut(s) 423, 449
EarI CTCTTC 2 cut(s) 423, 449
Ecl136II GAGCTC 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 568, 577
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 4 cut(s) 116, 411, 436, 480
FatI CATG 4 cut(s) 112, 407, 432, 476
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 648, 660
FokI GGATG 4 cut(s) 28, 46, 62, 668
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 648, 660
GlaI GCGC 1 cut(s) 670
GluI GCNGC 2 cut(s) 648, 660
HaeIII GGCC 4 cut(s) 24, 415, 469, 519
HapII CCGG 4 cut(s) 71, 100, 334, 503
HhaI GCGC 1 cut(s) 671
Hin1II CATG 4 cut(s) 116, 411, 436, 480
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 1 cut(s) 56
HpaII CCGG 4 cut(s) 71, 100, 334, 503
HphI GGTGA 3 cut(s) 244, 563, 584
Hpy166II GTNNAC 2 cut(s) 509, 586
Hpy188I TCNGA 4 cut(s) 46, 83, 96, 453
Hpy188III TCNNGA 4 cut(s) 140, 323, 362, 610
Hpy8I GTNNAC 2 cut(s) 509, 586
HpyAV CCTTC 6 cut(s) 175, 187, 193, 199, 205, 212
HpyCH4V TGCA 4 cut(s) 112, 509, 647, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 668
HpyF3I CTNAG 3 cut(s) 363, 426, 528
Hsp92II CATG 4 cut(s) 116, 411, 436, 480
HspAI GCGC 1 cut(s) 669
Kzo9I GATC 2 cut(s) 8, 91
LmnI GCTCC 2 cut(s) 102, 142
Lsp1109I GCAGC 2 cut(s) 659, 671
LweI GCATC 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 10, 93
MboI GATC 2 cut(s) 8, 91
MboII GAAGA 6 cut(s) 47, 65, 155, 398, 410, 466
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 350, 369, 511
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 8 cut(s) 89, 174, 177, 365, 421, 426, 510, 547
MseI TTAA 3 cut(s) 267, 278, 293
MslI CAYNNNNRTG 2 cut(s) 278, 570
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 4 cut(s) 71, 100, 334, 503
MspR9I CCNGG 3 cut(s) 504, 570, 579
MvaI CCWGG 2 cut(s) 570, 579
MwoI GCNNNNNNNGC 2 cut(s) 656, 668
NciI CCSGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 643
NdeII GATC 2 cut(s) 8, 91
NlaIII CATG 4 cut(s) 116, 411, 436, 480
NlaIV GGNNCC 2 cut(s) 138, 332
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 570
PceI AGGCCT 1 cut(s) 415
PciI ACATGT 1 cut(s) 407
PfeI GAWTC 1 cut(s) 56
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 2 cut(s) 649, 661
PscI ACATGT 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 568, 577
PspGI CCWGG 2 cut(s) 568, 577
PspN4I GGNNCC 2 cut(s) 138, 332
PspPI GGNCC 3 cut(s) 22, 254, 518
PsuI RGATCY 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 662
RseI CAYNNNNRTG 2 cut(s) 278, 570
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 267, 278, 293
SatI GCNGC 2 cut(s) 648, 660
Sau3AI GATC 2 cut(s) 8, 91
Sau96I GGNCC 3 cut(s) 22, 254, 518
ScrFI CCNGG 3 cut(s) 504, 570, 579
SduI GDGCHC 3 cut(s) 350, 369, 511
SetI ASST 7 cut(s) 126, 234, 357, 369, 492, 514, 664
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 278, 570
SmlI CTYRAG 2 cut(s) 368, 608
SmoI CTYRAG 2 cut(s) 368, 608
Sse9I AATT 1 cut(s) 268
SseBI AGGCCT 1 cut(s) 415
SspI AATATT 1 cut(s) 290
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 3 cut(s) 502, 568, 577
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 267, 278, 293
Tru9I TTAA 3 cut(s) 267, 278, 293
TscAI CASTG 3 cut(s) 350, 470, 657
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 647, 659
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 3 cut(s) 350, 470, 657
VneI GTGCAC 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 254
XceI RCATGY 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.