Rroxscaffold_3G00245290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002864
Physical Location & Seq
Forward (+)
38180096 .. 38193793
13698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245290.1

Sequence Viewer

Length: 366 bp
ATGGGCCAGGAACTTGATGAAGAACAAGCAGACCGCCGGCCATCCTCTCGATGGCAAGATTTGGGTGAGTTGCCGAAAAACGAGCTGATTATTAAGGCTCCCGAAAAGGCGAGAACGGGGTGGAAGATGGTTTGCGTAAGATTGCTCATGAACAACGAATCTCTTCTTTCTTGCTTCGGGGCCTTCTTATTTGCTGATCTCGAAATTGCAGAAAAGCCCGCATTTAAAAATTTGGAAAGGTGGGTTCGCTTCGTTTCATCCTCCTCTAAAGGTCGAGTAACAGTAACAGTCATCGAAGTTGAGGGTTGGTTGCTGTGTAGCACGGACGTTGAAGTGTACGTTAGTTTTATTCTTCCCACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.79

Weight (kDa)

5.06

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 34, 219
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AoxI GGCC 3 cut(s) 4, 38, 180
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 4, 180
AsuHPI GGTGA 1 cut(s) 77
BccI CCATC 3 cut(s) 45, 49, 121
BciT130I CCWGG 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 4, 180
BmiI GGNNCC 2 cut(s) 99, 181
BmrFI CCNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 36
BseBI CCWGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 41, 257
BseLI CCNNNNNNNGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 253
BshFI GGCC 3 cut(s) 6, 40, 182
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 3 cut(s) 6, 40, 182
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 34, 219
BspANI GGCC 3 cut(s) 6, 40, 182
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 99, 181
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 283, 289, 361
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 38, 219
BstF5I GGATG 2 cut(s) 41, 257
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 6, 40, 182
BtsCI GGATG 2 cut(s) 41, 257
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 38, 219
CciI TCATGA 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 4, 180
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 148
CviJI RGCY 6 cut(s) 6, 40, 85, 98, 182, 217
CviKI_1 RGCY 6 cut(s) 6, 40, 85, 98, 182, 217
CviQI GTAC 1 cut(s) 337
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 226
FokI GGATG 2 cut(s) 28, 244
HaeIII GGCC 3 cut(s) 6, 40, 182
HapII CCGG 1 cut(s) 37
Hin1II CATG 1 cut(s) 151
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 48, 101, 148, 200
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 3 cut(s) 283, 289, 361
HpyCH4IV ACGT 2 cut(s) 327, 339
HpyCH4V TGCA 1 cut(s) 209
HpySE526I ACGT 2 cut(s) 327, 339
Hsp92II CATG 1 cut(s) 151
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 2 cut(s) 20, 50
MaeII ACGT 2 cut(s) 327, 339
MaeIII GTNAC 2 cut(s) 277, 283
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 32, 136, 155, 344
MluCI AATT 2 cut(s) 204, 229
MnlI CCTC 4 cut(s) 55, 271, 274, 295
MroNI GCCGGC 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 2 cut(s) 93, 225
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
NaeI GCCGGC 1 cut(s) 38
NdeII GATC 1 cut(s) 196
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 99, 181
PagI TCATGA 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 99, 181
PspPI GGNCC 2 cut(s) 4, 180
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 93, 225
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 4, 180
ScrFI CCNGG 1 cut(s) 8
SetI ASST 5 cut(s) 87, 242, 274, 330, 342
Sse9I AATT 2 cut(s) 204, 229
SsiI CCGC 2 cut(s) 34, 219
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 283, 289, 361
TaiI ACGT 2 cut(s) 330, 342
TaqI TCGA 4 cut(s) 49, 201, 274, 294
TasI AATT 2 cut(s) 204, 229
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 93, 225
Tru9I TTAA 2 cut(s) 93, 225
TscAI CASTG 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 33, 164, 246
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 364
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.