Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

29039929 .. 29040751

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39301.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGTCCTAATCCAGAACGGCACCGGACTTTTAACTGCCCAAACCTGACTCCTGAGCTCAAGGAAAGACTAAAAGAACTAAGAAGCGAGTTCGGACACAGCAAGGCTTTTGACCCTGATGACTTGTGCTGTCATATATGTGAGAAGAAGAAAGACCACTGGTCTTCAGAATGCCCGTACCTCTTTGCATATCAAGCTGGCATGGTGCGCGCACATGTTGGCCCTTTTGCTGAATTTATCTGTATGTGTTGTGGTGAGATGGATGCCCACCCTGGTGAGCCTGGTGTTGACTGGGATGCATATTGCCGTCTCAAATCTGCCTTTTCTTATCTCACATTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.06

Weight (kDa)

5.82

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccII	CGCG	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	271, 280
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	2 cut(s)	58, 197
AluI	AGCT	2 cut(s)	58, 197
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	210, 212
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	266, 287
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	35, 291
BciT130I	CCWGG	2 cut(s)	273, 282
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	273, 282
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	273, 282
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	253, 286
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	164, 296
BseBI	CCWGG	2 cut(s)	273, 282
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	268, 301
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	164, 296
BsePI	GCGCGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	164, 296
BssECI	CCNNGG	1 cut(s)	271
BssHII	GCGCGC	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	273, 282
BstC8I	GCNNGC	2 cut(s)	199, 210
BstDEI	CTNAG	2 cut(s)	54, 80
BstF5I	GGATG	2 cut(s)	268, 301
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	210, 212
BstMAI	GTCTC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 207
BstNI	CCWGG	2 cut(s)	273, 282
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	271, 280
BstUI	CGCG	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	268, 301
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	199, 210
CfoI	GCGC	2 cut(s)	210, 212
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	202, 215
CviJI	RGCY	6 cut(s)	58, 107, 197, 222, 280, 342
CviKI_1	RGCY	6 cut(s)	58, 107, 197, 222, 280, 342
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	54, 80
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	271, 280
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	2 cut(s)	205, 218
FaiI	YATR	8 cut(s)	135, 137, 139, 190, 203, 216, 245, 301
FatI	CATG	2 cut(s)	201, 214
FokI	GGATG	2 cut(s)	275, 308
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	2 cut(s)	209, 211
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	2 cut(s)	210, 212
Hin1II	CATG	2 cut(s)	205, 218
Hin6I	GCGC	2 cut(s)	208, 210
HinP1I	GCGC	2 cut(s)	208, 210
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	266, 287
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	95, 169
Hpy188III	TCNNGA	2 cut(s)	14, 53
Hpy8I	GTNNAC	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	188, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 207
HpyF3I	CTNAG	2 cut(s)	54, 80
Hsp92II	CATG	2 cut(s)	205, 218
HspAI	GCGC	2 cut(s)	208, 210
LweI	GCATC	2 cut(s)	253, 286
MaeI	CTAG	1 cut(s)	343
MboII	GAAGA	3 cut(s)	156, 157, 160
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	138, 273
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	273, 282
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	273, 282
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	194, 207
NlaIII	CATG	2 cut(s)	205, 218
NlaIV	GGNNCC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	301
NspI	RCATGY	1 cut(s)	218
OliI	CACNNNNGTG	1 cut(s)	273
PauI	GCGCGC	1 cut(s)	208
PciI	ACATGT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	271, 280
PspGI	CCWGG	2 cut(s)	271, 280
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	221
PteI	GCGCGC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	138, 273
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	273, 282
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	48, 60, 183, 199
SfaNI	GCATC	2 cut(s)	253, 286
SmiMI	CAYNNNNRTG	2 cut(s)	138, 273
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	233
SspMI	CTAG	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	271, 280
TasI	AATT	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	164
TspRI	CASTG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.