FvH4_3g34361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002864
Physical Location & Seq
Forward (+)
29848473 .. 29848808
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34361.t1

Sequence Viewer

Length: 204 bp
ATGAAAGCTGAAGAACCGCAGGTGGCGCCGCCGGGCATCCGCCGTGGGAAAGATCTGCCCAAAGATGATAAGCCGGTCATCCTCCGCTGGCAAGATCTGCCCGAAGATGATCCAAACAGAGATATGATTATTGTGGCCCCCGAAGATTTTATGCCCCCGCCTGAGAAGGAGAGTGAAAAACCATTGGCTAATTACATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.71

Weight (kDa)

4.71

Isoelectric Point (pI)

82.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 5 cut(s) 17, 29, 40, 85, 158
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 26
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 33
BanI GGYRCC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 10
BglII AGATCT 2 cut(s) 52, 94
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 27, 138
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 36, 78
BseMII CTCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 32, 74
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 52, 94, 109
BspACI CCGC 5 cut(s) 17, 29, 40, 85, 158
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 27, 138
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 52, 94, 109
BssNI GRCGYC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 36, 78
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 55, 97, 112
BstMBI GATC 3 cut(s) 52, 94, 109
BstMWI GCNNNNNNNGC 2 cut(s) 25, 97
BstSCI CCNGG 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 52, 94
BstYI RGATCY 2 cut(s) 52, 94
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 36, 78
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 4 cut(s) 8, 73, 137, 188
CviKI_1 RGCY 4 cut(s) 8, 73, 137, 188
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 27
DpnI GATC 3 cut(s) 54, 96, 111
DpnII GATC 3 cut(s) 52, 94, 109
EciI GGCGGA 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 30
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
FaiI YATR 2 cut(s) 125, 152
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 23, 65
Fsp4HI GCNGC 1 cut(s) 29
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 32, 74
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 2 cut(s) 32, 74
HpyAV CCTTC 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 97
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 26
KasI GGCGCC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 52, 94, 109
LpnPI CCDG 5 cut(s) 5, 45, 73, 87, 174
LweI GCATC 1 cut(s) 45
MalI GATC 3 cut(s) 54, 96, 111
MboI GATC 3 cut(s) 52, 94, 109
MboII GAAGA 3 cut(s) 23, 116, 155
MflI RGATCY 2 cut(s) 52, 94
MluCI AATT 1 cut(s) 190
Mly113I GGCGCC 1 cut(s) 26
MnlI CCTC 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 2 cut(s) 32, 74
MspR9I CCNGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 25, 97
NarI GGCGCC 1 cut(s) 26
NciI CCSGG 1 cut(s) 33
NdeII GATC 3 cut(s) 52, 94, 109
NlaIV GGNNCC 2 cut(s) 27, 138
PaqCI CACCTGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 27, 138
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 2 cut(s) 52, 94
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 52, 94, 109
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 33
SetI ASST 2 cut(s) 10, 24
SfaNI GCATC 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 27
Sse9I AATT 1 cut(s) 190
SsiI CCGC 5 cut(s) 17, 29, 40, 85, 158
SspDI GGCGCC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 31
TasI AATT 1 cut(s) 190
TauI GCSGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.