Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

67561686 .. 67563026

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGTCCGAATCCAGATTGGCACCGGACTGTTCACTGCCCCAACCTCACTCCTGAGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGGGATCGAAAACTTAAAGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGACAGACCACTGGTCTTCAGAATGCTCATACCTGCTCGAATATCCGAGGGGTGCAATTGTTGGTCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCCTGCTGTTACTTATCCCAGTATCAAGGAACAGCTGATGGAACTGACACTGGCATCAGAAGGCGCAGCTGATGGCAATGGCAACAACGCAAGTACATCAGAGGGCGCAGCTTATGGCACTGGCATCAAGGCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.12

Weight (kDa)

6.98

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	259, 268
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	58, 107, 337, 371, 413
AluI	AGCT	5 cut(s)	58, 107, 337, 371, 413
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	368, 410
AspLEI	GCGC	2 cut(s)	368, 410
AsuHPI	GGTGA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	380, 422
BccI	CCATC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	261, 270
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	2 cut(s)	369, 411
BlsI	GCNGC	2 cut(s)	370, 412
Bme1390I	CCNGG	2 cut(s)	261, 270
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	261, 270
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	240, 365, 435
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	44, 284
BsaJI	CCNNGG	2 cut(s)	191, 259
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	5 cut(s)	161, 284, 321, 357, 427
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	261, 270
BseDI	CCNNGG	2 cut(s)	191, 259
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	5 cut(s)	161, 284, 321, 357, 427
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	380, 422
BshNI	GGYRCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	5 cut(s)	161, 284, 321, 357, 427
BssECI	CCNNGG	2 cut(s)	191, 259
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	261, 270
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	368, 410
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNI	CCWGG	2 cut(s)	261, 270
BstSCI	CCNGG	2 cut(s)	259, 268
BstV1I	GCAGC	2 cut(s)	380, 422
BstV2I	GAAGAC	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	4 cut(s)	34, 154, 350, 420
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	2 cut(s)	368, 410
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	1 cut(s)	418
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	8 cut(s)	58, 70, 107, 128, 304, 337, 371, 413
CviKI_1	RGCY	8 cut(s)	58, 70, 107, 128, 304, 337, 371, 413
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	259, 268
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	125, 135, 175, 417
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	369, 411
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	369, 411
GlaI	GCGC	2 cut(s)	367, 409
GluI	GCNGC	2 cut(s)	369, 411
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	2 cut(s)	368, 410
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	366, 408
HinP1I	GCGC	2 cut(s)	366, 408
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	9, 166, 192, 361, 403
Hpy188III	TCNNGA	3 cut(s)	14, 53, 275
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	366, 408
Kzo9I	GATC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	380, 422
LweI	GCATC	3 cut(s)	240, 365, 435
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	201, 225
MnlI	CCTC	4 cut(s)	56, 186, 238, 397
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	117, 261
MspA1I	CMGCKG	2 cut(s)	337, 371
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	261, 270
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	261, 270
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	261
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	370, 412
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	259, 268
PspGI	CCWGG	2 cut(s)	259, 268
PspN4I	GGNNCC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	337, 371
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	117, 261
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	369, 411
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	261, 270
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	48, 60, 109, 180, 339, 373, 415
SfaNI	GCATC	3 cut(s)	240, 365, 435
SmiMI	CAYNNNNRTG	2 cut(s)	117, 261
SmlI	CTYRAG	2 cut(s)	59, 299
SmoI	CTYRAG	2 cut(s)	59, 299
Sse9I	AATT	2 cut(s)	201, 225
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	259, 268
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	94, 183
TasI	AATT	2 cut(s)	201, 225
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	4 cut(s)	41, 161, 357, 427
TseI	GCWGC	2 cut(s)	368, 410
TspRI	CASTG	4 cut(s)	41, 161, 357, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.