Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

67970295 .. 67971955

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGCTGGGCTCTGGGATGTTTGTTCACAGTCGGTTGGGTCCATAAGCCTATATCGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGCAGTCGAACTAAGGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGACAGACCACTGGTCTTCAGAATGCTCTTACCTGCTCGAATATCCGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCCTGCTGTTACTTATCCCAGTATCAAGGAACAGCTGATGGCACTGACACTGGCATCAGAAGGCGCAGCTGATGGCACTGGCAACAACGCAAGTACATCAGAGGGCGCAGCATATGGCACTGGCATCAAGGCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.67

Weight (kDa)

8.17

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	257
AhdI	GACNNNNNGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	256, 265
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	334, 368
AluI	AGCT	2 cut(s)	334, 368
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	87, 365, 407
AspLEI	GCGC	2 cut(s)	365, 407
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	99, 377, 419
BccI	CCATC	2 cut(s)	331, 365
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	258, 267
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	88, 366, 408
BlsI	GCNGC	3 cut(s)	89, 367, 409
Bme1390I	CCNGG	2 cut(s)	258, 267
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	258, 267
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	237, 362, 432
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	2 cut(s)	44, 281
BsaJI	CCNNGG	2 cut(s)	188, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BseBI	CCWGG	2 cut(s)	258, 267
BseDI	CCNNGG	2 cut(s)	188, 256
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseNI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	99, 377, 419
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	183
BsrI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BssECI	CCNNGG	2 cut(s)	188, 256
Bst2UI	CCWGG	2 cut(s)	258, 267
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	365, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	2 cut(s)	258, 267
BstSCI	CCNGG	2 cut(s)	256, 265
BstV1I	GCAGC	3 cut(s)	99, 377, 419
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	5 cut(s)	151, 341, 347, 375, 417
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	2 cut(s)	365, 407
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	393
CspCI	CAANNNNNGTGG	1 cut(s)	415
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	1 cut(s)	99
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	256, 265
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	45, 53, 122, 132, 412, 414
FatI	CATG	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	88, 366, 408
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	88, 366, 408
GlaI	GCGC	2 cut(s)	364, 406
GluI	GCNGC	3 cut(s)	88, 366, 408
GsaI	CCCAGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	2 cut(s)	365, 407
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	2 cut(s)	363, 405
HinP1I	GCGC	2 cut(s)	363, 405
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	4 cut(s)	163, 189, 358, 400
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	2 cut(s)	363, 405
Lsp1109I	GCAGC	3 cut(s)	99, 377, 419
LweI	GCATC	3 cut(s)	237, 362, 432
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	150
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	198, 222
MnlI	CCTC	3 cut(s)	183, 235, 394
MslI	CAYNNNNRTG	2 cut(s)	114, 258
MspA1I	CMGCKG	2 cut(s)	334, 368
MspR9I	CCNGG	2 cut(s)	258, 267
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	258, 267
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	1 cut(s)	412
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	258
PctI	GAATGC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	89, 367, 409
Psp6I	CCWGG	2 cut(s)	256, 265
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	2 cut(s)	256, 265
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	2 cut(s)	334, 368
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	2 cut(s)	114, 258
SatI	GCNGC	3 cut(s)	88, 366, 408
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	258, 267
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	3 cut(s)	177, 336, 370
SfaNI	GCATC	3 cut(s)	237, 362, 432
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	114, 258
SmlI	CTYRAG	2 cut(s)	59, 296
SmoI	CTYRAG	2 cut(s)	59, 296
Sse9I	AATT	2 cut(s)	198, 222
StyD4I	CCNGG	2 cut(s)	256, 265
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	94, 180
TasI	AATT	2 cut(s)	198, 222
TatI	WGTACW	1 cut(s)	392
TscAI	CASTG	5 cut(s)	158, 348, 354, 382, 424
TseI	GCWGC	3 cut(s)	87, 365, 407
TspRI	CASTG	5 cut(s)	158, 348, 354, 382, 424
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.