Rroxscaffold_1G00018750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002864
Physical Location & Seq
Forward (+)
22882533 .. 22883610
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018750.1

Sequence Viewer

Length: 627 bp
ATGCCAATGCCGATCCCTAACCGCAAAGCCATGGGCCAGAACCCGAAGAACAAGCCGCGCCGCCGGTCATCCTCTCGATGGCAAGATCTGGGAGAGTTGCCGGAAGGCAAGGTGATTATTAAAGCTCTCGAAGACAATACCCCTCCTCATGGGAAAGGGAAAGGGAAAGGGAAGGGGAAAGGGAACCAAGGGAAAGTGAAAGCACAGGTAAGTGATGATAAGGAAGGACCAACATTGGCTAATTACATCAAACTAAGTGAGTATTCCTTTGCATGTAAGATGTGTCCAAATCCAGATTGGCACCGGATTGTTCACTGCCCCAACCTCACTCCTGACCACTGGTCTTCAGAATGCTCTTACCAGCTCGAATATCCGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGAAGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGTGTTATTCTCAAGCCTGCTGTTACTTATCCCAGTATCAAGGAACAGCTGATGGAACTGACACTGGCATCAGAAGGCGCAGCTGATGGCAATGGCAACAACGCAAGTACATCAGAGGGCGCAGCTTATGGCACTGGCATCAAGGCAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.48

Weight (kDa)

9.02

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AccII CGCG 1 cut(s) 58
AciI CCGC 3 cut(s) 22, 56, 61
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 3 cut(s) 78, 149, 443
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 2 cut(s) 442, 451
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 5 cut(s) 125, 364, 520, 554, 596
AluI AGCT 5 cut(s) 125, 364, 520, 554, 596
AlwI GGATC 1 cut(s) 7
AoxI GGCC 2 cut(s) 34, 391
ApeKI GCWGC 2 cut(s) 551, 593
AspLEI GCGC 3 cut(s) 60, 551, 593
AspS9I GGNCC 2 cut(s) 34, 227
AsuHPI GGTGA 2 cut(s) 124, 437
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 138, 336
BbvI GCAGC 2 cut(s) 563, 605
BccI CCATC 3 cut(s) 72, 517, 551
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 2 cut(s) 444, 453
BglII AGATCT 1 cut(s) 85
BisI GCNGC 4 cut(s) 56, 61, 552, 594
BlsI GCNGC 4 cut(s) 57, 62, 553, 595
Bme1390I CCNGG 2 cut(s) 444, 453
Bme18I GGWCC 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 34, 227
BmiI GGNNCC 2 cut(s) 185, 302
BmrFI CCNGG 2 cut(s) 444, 453
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 548, 618
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 2 cut(s) 138, 336
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 4 cut(s) 30, 187, 374, 442
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 149, 443
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 5 cut(s) 344, 467, 504, 540, 610
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 2 cut(s) 444, 453
BseDI CCNNGG 4 cut(s) 30, 187, 374, 442
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 3 cut(s) 78, 149, 443
BseMI GCAATG 1 cut(s) 568
BseNI ACTGG 5 cut(s) 344, 467, 504, 540, 610
BseRI GAGGAG 2 cut(s) 135, 443
BseXI GCAGC 2 cut(s) 563, 605
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 36, 393
BshNI GGYRCC 1 cut(s) 300
BsiSI CCGG 3 cut(s) 64, 101, 304
BslI CCNNNNNNNGG 3 cut(s) 78, 149, 443
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 2 cut(s) 36, 393
Bsp143I GATC 2 cut(s) 12, 85
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 3 cut(s) 22, 56, 61
BspANI GGCC 2 cut(s) 36, 393
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 185, 302
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 5 cut(s) 344, 467, 504, 540, 610
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 4 cut(s) 30, 187, 374, 442
BssMI GATC 2 cut(s) 12, 85
BssT1I CCWWGG 2 cut(s) 30, 187
Bst2UI CCWGG 2 cut(s) 444, 453
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 3 cut(s) 60, 551, 593
BstKTI GATC 2 cut(s) 15, 88
BstMBI GATC 2 cut(s) 12, 85
BstNI CCWGG 2 cut(s) 444, 453
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 442, 451
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 563, 605
BstV2I GAAGAC 2 cut(s) 138, 336
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 36, 393
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 4 cut(s) 313, 337, 533, 603
Cac8I GCNNGC 1 cut(s) 489
CfoI GCGC 3 cut(s) 60, 551, 593
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 34, 227
Csp6I GTAC 1 cut(s) 579
CspCI CAANNNNNGTGG 1 cut(s) 601
CviAII CATG 3 cut(s) 31, 149, 273
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 14, 87
DpnII GATC 2 cut(s) 12, 85
DriI GACNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 391
Eam1105I GACNNNNNGTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 30, 187
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 442, 451
EcoT14I CCWWGG 2 cut(s) 30, 187
ErhI CCWWGG 2 cut(s) 30, 187
FaeI CATG 3 cut(s) 34, 152, 276
FaiI YATR 4 cut(s) 32, 150, 274, 600
FatI CATG 3 cut(s) 30, 148, 272
Fnu4HI GCNGC 4 cut(s) 56, 61, 552, 594
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 56, 61, 552, 594
GlaI GCGC 3 cut(s) 59, 550, 592
GluI GCNGC 4 cut(s) 56, 61, 552, 594
HaeIII GGCC 2 cut(s) 36, 393
HapII CCGG 3 cut(s) 64, 101, 304
HhaI GCGC 3 cut(s) 60, 551, 593
Hin1II CATG 3 cut(s) 34, 152, 276
Hin6I GCGC 3 cut(s) 58, 549, 591
HinP1I GCGC 3 cut(s) 58, 549, 591
HpaII CCGG 3 cut(s) 64, 101, 304
HphI GGTGA 2 cut(s) 124, 437
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 349, 375, 544, 586
Hpy188III TCNNGA 5 cut(s) 75, 128, 293, 332, 458
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 4 cut(s) 98, 166, 218, 539
HpyCH4V TGCA 2 cut(s) 272, 383
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 3 cut(s) 34, 152, 276
HspAI GCGC 3 cut(s) 58, 549, 591
Kzo9I GATC 2 cut(s) 12, 85
Lsp1109I GCAGC 2 cut(s) 563, 605
LweI GCATC 2 cut(s) 548, 618
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 14, 87
MboI GATC 2 cut(s) 12, 85
MboII GAAGA 3 cut(s) 58, 143, 336
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 241, 384, 408
MnlI CCTC 7 cut(s) 82, 153, 156, 335, 369, 421, 580
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 520, 554
MspI CCGG 3 cut(s) 64, 101, 304
MspR9I CCNGG 2 cut(s) 444, 453
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 2 cut(s) 444, 453
MvnI CGCG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 30
NdeII GATC 2 cut(s) 12, 85
NlaIII CATG 3 cut(s) 34, 152, 276
NlaIV GGNNCC 2 cut(s) 185, 302
NspI RCATGY 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 444
PctI GAATGC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 57, 62, 553, 595
Psp6I CCWGG 2 cut(s) 442, 451
PspGI CCWGG 2 cut(s) 442, 451
PspN4I GGNNCC 2 cut(s) 185, 302
PspPI GGNCC 2 cut(s) 34, 227
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 2 cut(s) 520, 554
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 4 cut(s) 56, 61, 552, 594
Sau3AI GATC 2 cut(s) 12, 85
Sau96I GGNCC 2 cut(s) 34, 227
ScrFI CCNGG 2 cut(s) 444, 453
SetI ASST 8 cut(s) 114, 127, 210, 327, 366, 522, 556, 598
SfaNI GCATC 2 cut(s) 548, 618
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 241, 384, 408
SsiI CCGC 3 cut(s) 22, 56, 61
StyD4I CCNGG 2 cut(s) 442, 451
StyI CCWWGG 2 cut(s) 30, 187
TaqI TCGA 3 cut(s) 76, 129, 366
TasI AATT 3 cut(s) 241, 384, 408
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 58, 63
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 4 cut(s) 320, 344, 540, 610
TseI GCWGC 2 cut(s) 551, 593
TspRI CASTG 4 cut(s) 320, 344, 540, 610
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.