Rroxscaffold_7G00195750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002864
Physical Location & Seq
Forward (+)
38331760 .. 38334157
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195750.1

Sequence Viewer

Length: 279 bp
ATGGTAGCGGTGGCGGCGGCGCCGCCACTGTGGGCGGCGGTAGCGGCAGCTAGGCCGGATTTACGCCCCACGGCCATAGGCCAAGAAATTGAAGAACAAGCGGCGCCGCCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCCGAAAAACGAGCTGGTTAATAAGGCTCTCGAAGACAATACCCCTCCTCGTGGGAAAGAGAAAGGGAAATGGAACAAGGGGAAAGTGAAAGCATTGACTTTTAAGGGAAGTCTCCGGTTGGAGTCGGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.95

Weight (kDa)

9.45

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 103
AciI CCGC 9 cut(s) 8, 14, 17, 23, 35, 38, 44, 101, 107
AcoI YGGCCR 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 20, 104
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 2 cut(s) 50, 157
AluI AGCT 2 cut(s) 50, 157
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 3 cut(s) 53, 72, 79
ApeKI GCWGC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 22, 106
BanI GGYRCC 2 cut(s) 19, 103
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 2 cut(s) 23, 107
BisI GCNGC 8 cut(s) 15, 18, 23, 36, 45, 48, 102, 107
BlsI GCNGC 8 cut(s) 16, 19, 24, 37, 46, 49, 103, 108
BmiI GGNNCC 2 cut(s) 21, 105
BpiI GAAGAC 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 20, 104
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 3 cut(s) 55, 74, 81
BshNI GGYRCC 2 cut(s) 19, 103
BsiSI CCGG 3 cut(s) 56, 110, 259
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 3 cut(s) 55, 74, 81
BspACI CCGC 9 cut(s) 8, 14, 17, 23, 35, 38, 44, 101, 107
BspANI GGCC 3 cut(s) 55, 74, 81
BspLI GGNNCC 2 cut(s) 21, 105
BspT107I GGYRCC 2 cut(s) 19, 103
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 2 cut(s) 20, 104
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 30
BstACI GRCGYC 2 cut(s) 20, 104
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 114
BstH2I RGCGCY 2 cut(s) 23, 107
BstHHI GCGC 2 cut(s) 22, 106
BstMAI GTCTC 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 14, 41, 44
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 3 cut(s) 55, 74, 81
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 22, 106
Cfr10I RCCGGY 1 cut(s) 109
CviJI RGCY 6 cut(s) 50, 55, 74, 81, 157, 170
CviKI_1 RGCY 6 cut(s) 50, 55, 74, 81, 157, 170
DinI GGCGCC 2 cut(s) 21, 105
EaeI YGGCCR 1 cut(s) 72
EgeI GGCGCC 2 cut(s) 21, 105
EheI GGCGCC 2 cut(s) 21, 105
FaiI YATR 1 cut(s) 77
Fnu4HI GCNGC 8 cut(s) 15, 18, 23, 36, 45, 48, 102, 107
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 8 cut(s) 15, 18, 23, 36, 45, 48, 102, 107
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 21, 105
GluI GCNGC 8 cut(s) 15, 18, 23, 36, 45, 48, 102, 107
HaeII RGCGCY 2 cut(s) 23, 107
HaeIII GGCC 3 cut(s) 55, 74, 81
HapII CCGG 3 cut(s) 56, 110, 259
HhaI GCGC 2 cut(s) 22, 106
Hin1I GRCGYC 2 cut(s) 20, 104
Hin6I GCGC 2 cut(s) 20, 104
HinP1I GCGC 2 cut(s) 20, 104
HinfI GANTC 1 cut(s) 266
HpaII CCGG 3 cut(s) 56, 110, 259
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 173, 276
HpyCH4III ACNGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 41, 44
Hsp92I GRCGYC 2 cut(s) 20, 104
HspAI GCGC 2 cut(s) 20, 104
KasI GGCGCC 2 cut(s) 19, 103
LpnPI CCDG 4 cut(s) 69, 123, 143, 272
Lsp1109I GCAGC 1 cut(s) 59
MaeI CTAG 1 cut(s) 51
MboII GAAGA 2 cut(s) 104, 188
MluCI AATT 1 cut(s) 87
Mly113I GGCGCC 2 cut(s) 20, 104
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 128, 198, 201
MseI TTAA 2 cut(s) 162, 246
MspI CCGG 3 cut(s) 56, 110, 259
MwoI GCNNNNNNNGC 3 cut(s) 14, 41, 44
NarI GGCGCC 2 cut(s) 20, 104
NlaIV GGNNCC 2 cut(s) 21, 105
PkrI GCNGC 8 cut(s) 16, 19, 24, 37, 46, 49, 103, 108
PleI GAGTC 1 cut(s) 274
PluTI GGCGCC 2 cut(s) 23, 107
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 21, 105
SaqAI TTAA 2 cut(s) 162, 246
SatI GCNGC 8 cut(s) 15, 18, 23, 36, 45, 48, 102, 107
SchI GAGTC 1 cut(s) 275
SetI ASST 2 cut(s) 52, 159
SfoI GGCGCC 2 cut(s) 21, 105
Sse9I AATT 1 cut(s) 87
SsiI CCGC 9 cut(s) 8, 14, 17, 23, 35, 38, 44, 101, 107
SspDI GGCGCC 2 cut(s) 19, 103
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 87
TauI GCSGC 7 cut(s) 17, 20, 25, 38, 47, 104, 109
Tru1I TTAA 2 cut(s) 162, 246
Tru9I TTAA 2 cut(s) 162, 246
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 47
TspRI CASTG 1 cut(s) 33
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.