Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

29853883 .. 29854832

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGGAGATCATCCGGGAAGGTCAAGAAAGCTAAAGAACCGCCATTTGCGCCGCCGGTCATCCGCCGTTGGAAAGATTTACCCAAAGATGATAAGCCGGTCATCCTCCGTTGGCAAGATCTACCCAAAGATGATCCAAACAGAGATATGGTTATTGTGGCCCCCGAAGATTATATGAAGGAGAATGAGAAAACAAAAGTGAAAGGGGAAAAGGCGGAAGGACCAGCATTGGCTAATTACATTAAAATAGGTGAATTTGCTTTGGCTTGTAAGATGTGTCCTAATCCAGATTGGCACCCGACCTTTCAGTGCCCCAACCTCACTCCTGAGCTCAAGGAATGGCTAAAAGAAGCAAGACTCAAGGGTGGAACATTTAGGGCTTTCCACCCTGATGACCGGTATTGTCATGTTTGTTTGTCGAAAGACTACTGCTCTTCAGCATGCCCATACCAGATTGAACTTCCAGTGGGTGCAACTGTTGGCCCTTTTGCTGAAATACTCTGTCTGTGTTGTGGTGAGGATAGACCTCACCCTGGTGTGCCTGGTGTCGACTGGAAAGCAAGAGCTGTTCTCAAGGATTCTTGTATGTTAGGTAGCCCCGAAGCTTTAAGGAGGGCAGCTGCCGCCCGTGGCATCAAGGCAAATACATCAGCAGGCGCAGCCAATGGCACAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

24.9

Weight (kDa)

8.71

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	5 cut(s)	41, 53, 64, 215, 624
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	532, 541
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	32, 331, 566, 605, 620
AluI	AGCT	5 cut(s)	32, 331, 566, 605, 620
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	159, 481
ApeKI	GCWGC	3 cut(s)	617, 620, 659
ApoI	RAATTY	1 cut(s)	254
AsiGI	ACCGGT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	52, 659
AspS9I	GGNCC	3 cut(s)	160, 221, 482
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	263, 521, 527
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	607, 629, 671
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	534, 543
BcnI	CCSGG	1 cut(s)	16
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	5 cut(s)	53, 618, 621, 624, 660
BlsI	GCNGC	5 cut(s)	54, 619, 622, 625, 661
Bme1390I	CCNGG	3 cut(s)	16, 534, 543
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	160, 221, 482
BmiI	GGNNCC	2 cut(s)	162, 296
BmrFI	CCNGG	3 cut(s)	16, 534, 543
BmsI	GCATC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	555, 587
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	3 cut(s)	317, 344, 557
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	532, 628
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	3 cut(s)	55, 97, 396
Bse1I	ACTGG	2 cut(s)	464, 557
BseBI	CCWGG	2 cut(s)	534, 543
BseDI	CCNNGG	2 cut(s)	532, 628
BseGI	GGATG	3 cut(s)	11, 60, 102
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	464, 557
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	607, 629, 671
BshFI	GGCC	2 cut(s)	161, 483
BshNI	GGYRCC	1 cut(s)	294
BshTI	ACCGGT	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	4 cut(s)	15, 56, 98, 397
BslI	CCNNNNNNNGG	1 cut(s)	533
BsnI	GGCC	2 cut(s)	161, 483
Bsp1286I	GDGCHC	2 cut(s)	314, 333
Bsp143I	GATC	3 cut(s)	8, 118, 133
BspACI	CCGC	5 cut(s)	41, 53, 64, 215, 624
BspANI	GGCC	2 cut(s)	161, 483
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	162, 296
BspPI	GGATC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	294
BsrFI	RCCGGY	3 cut(s)	55, 97, 396
BsrI	ACTGG	2 cut(s)	464, 557
BssAI	RCCGGY	3 cut(s)	55, 97, 396
BssECI	CCNNGG	2 cut(s)	532, 628
BssMI	GATC	3 cut(s)	8, 118, 133
Bst2UI	CCWGG	2 cut(s)	534, 543
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	442, 655
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	11, 60, 102
BstHHI	GCGC	2 cut(s)	52, 659
BstKTI	GATC	3 cut(s)	11, 121, 136
BstMBI	GATC	3 cut(s)	8, 118, 133
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 623, 659
BstNI	CCWGG	2 cut(s)	534, 543
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	14, 532, 541
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	607, 629, 671
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	161, 483
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	11, 60, 102
BtsIMutI	CAGTG	2 cut(s)	314, 471
Cac8I	GCNNGC	2 cut(s)	442, 655
CfoI	GCGC	2 cut(s)	52, 659
Cfr10I	RCCGGY	3 cut(s)	55, 97, 396
Cfr13I	GGNCC	3 cut(s)	160, 221, 482
CspAI	ACCGGT	1 cut(s)	396
CviAII	CATG	2 cut(s)	407, 441
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	10, 120, 135
DpnII	GATC	3 cut(s)	8, 118, 133
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	2 cut(s)	53, 230
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	532, 541
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	2 cut(s)	410, 444
FaiI	YATR	7 cut(s)	149, 174, 176, 408, 442, 448, 587
FatI	CATG	2 cut(s)	406, 440
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	5 cut(s)	53, 618, 621, 624, 660
FokI	GGATG	2 cut(s)	47, 89
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	5 cut(s)	53, 618, 621, 624, 660
GlaI	GCGC	2 cut(s)	51, 658
GluI	GCNGC	5 cut(s)	53, 618, 621, 624, 660
HaeIII	GGCC	2 cut(s)	161, 483
HapII	CCGG	4 cut(s)	15, 56, 98, 397
HhaI	GCGC	2 cut(s)	52, 659
Hin1II	CATG	2 cut(s)	410, 444
Hin6I	GCGC	2 cut(s)	50, 657
HinP1I	GCGC	2 cut(s)	50, 657
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	2 cut(s)	357, 578
HpaII	CCGG	4 cut(s)	15, 56, 98, 397
HphI	GGTGA	3 cut(s)	263, 521, 527
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	25, 287, 326
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	13, 172, 212
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 623, 659
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	410, 444
HspAI	GCGC	2 cut(s)	50, 657
Kzo9I	GATC	3 cut(s)	8, 118, 133
LguI	GCTCTTC	1 cut(s)	439
Lsp1109I	GCAGC	3 cut(s)	607, 629, 671
LweI	GCATC	1 cut(s)	642
MalI	GATC	3 cut(s)	10, 120, 135
MboI	GATC	3 cut(s)	8, 118, 133
MboII	GAAGA	2 cut(s)	179, 426
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	314, 333
MluCI	AATT	2 cut(s)	235, 254
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	116, 329, 511, 537, 606
MseI	TTAA	2 cut(s)	243, 608
MslI	CAYNNNNRTG	2 cut(s)	390, 534
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	4 cut(s)	15, 56, 98, 397
MspR9I	CCNGG	3 cut(s)	16, 534, 543
MvaI	CCWGG	2 cut(s)	534, 543
MwoI	GCNNNNNNNGC	3 cut(s)	49, 623, 659
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	8, 118, 133
NlaIII	CATG	2 cut(s)	410, 444
NlaIV	GGNNCC	2 cut(s)	162, 296
NspI	RCATGY	1 cut(s)	444
OliI	CACNNNNGTG	1 cut(s)	534
PaeI	GCATGC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	5 cut(s)	54, 619, 622, 625, 661
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	532, 541
PspGI	CCWGG	2 cut(s)	532, 541
PspN4I	GGNNCC	2 cut(s)	162, 296
PspPI	GGNCC	3 cut(s)	160, 221, 482
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	620
RseI	CAYNNNNRTG	2 cut(s)	390, 534
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	243, 608
SatI	GCNGC	5 cut(s)	53, 618, 621, 624, 660
Sau3AI	GATC	3 cut(s)	8, 118, 133
Sau96I	GGNCC	3 cut(s)	160, 221, 482
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	16, 534, 543
SduI	GDGCHC	2 cut(s)	314, 333
SfaNI	GCATC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	390, 534
SmlI	CTYRAG	3 cut(s)	332, 359, 572
SmoI	CTYRAG	3 cut(s)	332, 359, 572
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	2 cut(s)	235, 254
SsiI	CCGC	5 cut(s)	41, 53, 64, 215, 624
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	14, 532, 541
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	419, 549
TasI	AATT	2 cut(s)	235, 254
TauI	GCSGC	2 cut(s)	55, 626
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	2 cut(s)	243, 608
Tru9I	TTAA	2 cut(s)	243, 608
TscAI	CASTG	2 cut(s)	314, 471
TseI	GCWGC	3 cut(s)	617, 620, 659
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	314, 471
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.