Rroxscaffold_2G00125090

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002864
Physical Location & Seq
Reverse (-)
59691454 .. 59692139
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125090.1

Sequence Viewer

Length: 651 bp
ATGGGGAGATCATCCAAAAAGGGCCAGAAAGTTGAAGAACCATCCGTGCCACCGGTCATCCTCCGATGGCAAGATCTGAACCGGAGCGATTTGCATGAAAACGAGCTGATTATGATGGCTCCCGAAGACTATACCCCTCCTCGTGGGAAAGGGAAGGGGGAAGGGAAGGGGAAGGGGAAGGGGGAAGGGAAAGCACAGGTGAGCGCTGATAAGGCAGAAGGACCACCATTGGTTAATTACATCTTAATGAGTGAGTATTTAATGGATTGTAAGATGTGTCGTCCTAATCCAGATTGGCACCGGACTTTTCAGTGCCCCAACCTCACTCCTGAGCTCAAGGAAATGCTAAAAGAAGATAGAAGCAAGTTTGGAACATGTAGGCCTCTTCGCCCTGAGGACATGGGTTGTCATATATGTCTGAAGAGAGACCACTGGCCTATATCATGCCCCTACCAGCTCGTATATCCTCCGGGTGCACCTGTTGGCCCTTTTGCTGAGATAGTTTGTTTGTGTTGTGGTGAGGAGAAACCCCACCCTGGTGAGCCTGGTGTTGACTGGAAAGCAAGAGCCATTCTCAAGATTTCTCCAACTTATCCCAGTTTCGACTCATATGCAGCAGTGGGTGCAGCAGCTGATGGCGCAAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.88

Weight (kDa)

6.94

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 440
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 143, 536
AflIII ACRYGT 1 cut(s) 374
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 2 cut(s) 535, 544
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 4 cut(s) 106, 334, 457, 632
AluI AGCT 4 cut(s) 106, 334, 457, 632
Alw21I GWGCWC 2 cut(s) 336, 478
Alw26I GTCTC 1 cut(s) 420
Alw44I GTGCAC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 632
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 4 cut(s) 22, 380, 434, 484
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 614, 626, 629
AsiGI ACCGGT 1 cut(s) 52
AspLEI GCGC 2 cut(s) 206, 641
AspS9I GGNCC 3 cut(s) 22, 221, 485
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 211, 530, 551
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 393
BaeGI GKGCMC 2 cut(s) 317, 478
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 336, 478
BbvI GCAGC 3 cut(s) 626, 638, 641
BccI CCATC 4 cut(s) 49, 60, 109, 629
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 2 cut(s) 537, 546
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 207
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 615, 627, 630
BlsI GCNGC 3 cut(s) 616, 628, 631
Bme1390I CCNGG 3 cut(s) 471, 537, 546
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 22, 221, 485
BmiI GGNNCC 2 cut(s) 120, 299
BmrFI CCNGG 3 cut(s) 471, 537, 546
BmrI ACTGGG 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 591
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 558, 590
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 320, 560
BpuMI CCSGG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 535
BsaWI WCCGGW 3 cut(s) 52, 81, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 536
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 437, 560, 597
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 537, 546
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 11, 41, 57
BseLI CCNNNNNNNGG 2 cut(s) 143, 536
BseMII CTCAG 3 cut(s) 321, 384, 486
BseNI ACTGG 3 cut(s) 437, 560, 597
BseRI GAGGAG 2 cut(s) 129, 536
BseSI GKGCMC 2 cut(s) 317, 478
BseXI GCAGC 3 cut(s) 626, 638, 641
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 4 cut(s) 24, 382, 436, 486
BshNI GGYRCC 1 cut(s) 297
BshTI ACCGGT 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 336, 478
BsiSI CCGG 4 cut(s) 53, 82, 301, 470
BslI CCNNNNNNNGG 2 cut(s) 143, 536
BsmAI GTCTC 1 cut(s) 420
BsnI GGCC 4 cut(s) 24, 382, 436, 486
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 3 cut(s) 317, 336, 478
Bsp143I GATC 2 cut(s) 8, 73
BspANI GGCC 4 cut(s) 24, 382, 436, 486
BspCNI CTCAG 3 cut(s) 322, 385, 487
BspLI GGNNCC 2 cut(s) 120, 299
BspT107I GGYRCC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 3 cut(s) 437, 560, 597
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 2 cut(s) 8, 73
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 537, 546
Bst6I CTCTTC 2 cut(s) 390, 416
BstAPI GCANNNNNTGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 330, 393, 495
BstF5I GGATG 3 cut(s) 11, 41, 57
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 641
BstKTI GATC 2 cut(s) 11, 76
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 2 cut(s) 8, 73
BstMWI GCNNNNNNNGC 3 cut(s) 212, 623, 638
BstNI CCWGG 2 cut(s) 537, 546
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 3 cut(s) 469, 535, 544
BstSLI GKGCMC 2 cut(s) 317, 478
BstV1I GCAGC 3 cut(s) 626, 638, 641
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 4 cut(s) 24, 382, 436, 486
BtsCI GGATG 3 cut(s) 11, 41, 57
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 317, 430, 624
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 2 cut(s) 206, 641
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 22, 221, 485
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 4 cut(s) 95, 375, 400, 444
DdeI CTNAG 3 cut(s) 330, 393, 495
DpnI GATC 2 cut(s) 10, 75
DpnII GATC 2 cut(s) 8, 73
Eam1104I CTCTTC 2 cut(s) 390, 416
EarI CTCTTC 2 cut(s) 390, 416
Ecl136II GAGCTC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 221
Eco47III AGCGCT 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 440
Eco81I CCTNAGG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 535, 544
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 4 cut(s) 98, 378, 403, 447
FatI CATG 4 cut(s) 94, 374, 399, 443
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 615, 627, 630
FokI GGATG 2 cut(s) 28, 44
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 615, 627, 630
GlaI GCGC 2 cut(s) 205, 640
GluI GCNGC 3 cut(s) 615, 627, 630
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 4 cut(s) 24, 382, 436, 486
HapII CCGG 4 cut(s) 53, 82, 301, 470
HhaI GCGC 2 cut(s) 206, 641
Hin1II CATG 4 cut(s) 98, 378, 403, 447
Hin6I GCGC 2 cut(s) 204, 639
HinP1I GCGC 2 cut(s) 204, 639
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 1 cut(s) 605
HpaII CCGG 4 cut(s) 53, 82, 301, 470
HphI GGTGA 3 cut(s) 211, 530, 551
Hpy166II GTNNAC 2 cut(s) 476, 553
Hpy188I TCNGA 3 cut(s) 65, 78, 420
Hpy188III TCNNGA 4 cut(s) 122, 290, 329, 577
Hpy8I GTNNAC 2 cut(s) 476, 553
HpyAV CCTTC 7 cut(s) 148, 155, 160, 166, 172, 179, 212
HpyCH4V TGCA 4 cut(s) 94, 476, 614, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 623, 638
HpyF3I CTNAG 3 cut(s) 330, 393, 495
Hsp92II CATG 4 cut(s) 98, 378, 403, 447
HspAI GCGC 2 cut(s) 204, 639
Kzo9I GATC 2 cut(s) 8, 73
LmnI GCTCC 2 cut(s) 84, 124
Lsp1109I GCAGC 3 cut(s) 626, 638, 641
MalI GATC 2 cut(s) 10, 75
MboI GATC 2 cut(s) 8, 73
MboII GAAGA 5 cut(s) 47, 137, 365, 377, 433
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 317, 336, 478
MluCI AATT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 611
MnlI CCTC 8 cut(s) 71, 147, 150, 332, 388, 393, 477, 514
MseI TTAA 3 cut(s) 234, 245, 260
MslI CAYNNNNRTG 2 cut(s) 245, 537
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 4 cut(s) 53, 82, 301, 470
MspR9I CCNGG 3 cut(s) 471, 537, 546
MvaI CCWGG 2 cut(s) 537, 546
MwoI GCNNNNNNNGC 3 cut(s) 212, 623, 638
NciI CCSGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 610
NdeII GATC 2 cut(s) 8, 73
NlaIII CATG 4 cut(s) 98, 378, 403, 447
NlaIV GGNNCC 2 cut(s) 120, 299
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 537
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 374
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 3 cut(s) 616, 628, 631
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PscI ACATGT 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 535, 544
PspGI CCWGG 2 cut(s) 535, 544
PspN4I GGNNCC 2 cut(s) 120, 299
PspPI GGNCC 3 cut(s) 22, 221, 485
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 245, 537
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 234, 245, 260
SatI GCNGC 3 cut(s) 615, 627, 630
Sau3AI GATC 2 cut(s) 8, 73
Sau96I GGNCC 3 cut(s) 22, 221, 485
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 3 cut(s) 471, 537, 546
SduI GDGCHC 3 cut(s) 317, 336, 478
SetI ASST 7 cut(s) 108, 201, 324, 336, 459, 481, 634
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 245, 537
SmlI CTYRAG 2 cut(s) 335, 575
SmoI CTYRAG 2 cut(s) 335, 575
Sse9I AATT 1 cut(s) 235
SseBI AGGCCT 1 cut(s) 382
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 3 cut(s) 469, 535, 544
TaqI TCGA 1 cut(s) 603
TasI AATT 1 cut(s) 235
Tru1I TTAA 3 cut(s) 234, 245, 260
Tru9I TTAA 3 cut(s) 234, 245, 260
TscAI CASTG 3 cut(s) 317, 437, 624
TseI GCWGC 3 cut(s) 614, 626, 629
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 3 cut(s) 317, 437, 624
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 221
XceI RCATGY 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.