Rroxscaffold_5G00365650

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
47189392 .. 47190743
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365650.1

Sequence Viewer

Length: 309 bp
ATGGGGAGGTGCGCAAGGCCGAGGCGAAGCTACCCCGAAAGTTTCATGACCTATGGTGGCCGGAGGAGGAAGAAACGGCTTGGAGAAGAAATCGAAGGTTTTCCGCCGGATTTACGCCCCACGCCCATAGGCCAAGAAATTGAAGAACAAGCAGCGCCGTCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCCGAAAAACGAGCTGGTTAATAAGGCTCTCGAAGACAATACCCCTCCTCGTGGGAAAGAGAAAGGGAAAGGGAACAAGGGGAAAGTGAAAGCATTGGCTTTTATGGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.48

Weight (kDa)

9.86

Isoelectric Point (pI)

83.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 13
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 2 cut(s) 30, 208
AluI AGCT 2 cut(s) 30, 208
AoxI GGCC 3 cut(s) 17, 58, 130
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 14, 157
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 168
BceAI ACGGC 2 cut(s) 92, 142
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 79, 231
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 19, 60, 132
BsiSI CCGG 2 cut(s) 61, 107
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 3 cut(s) 19, 60, 132
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 19, 60, 132
BspHI TCATGA 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 20
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 2 cut(s) 14, 157
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 3 cut(s) 19, 60, 132
BtsCI GGATG 1 cut(s) 165
CciI TCATGA 1 cut(s) 45
CfoI GCGC 2 cut(s) 14, 157
CviAII CATG 1 cut(s) 46
CviJI RGCY 8 cut(s) 19, 30, 60, 79, 132, 208, 221, 293
CviKI_1 RGCY 8 cut(s) 19, 30, 60, 79, 132, 208, 221, 293
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 1 cut(s) 93
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 54, 128, 299
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 153
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 2 cut(s) 13, 156
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 3 cut(s) 19, 60, 132
HapII CCGG 2 cut(s) 61, 107
HhaI GCGC 2 cut(s) 14, 157
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 2 cut(s) 12, 155
HinP1I GCGC 2 cut(s) 12, 155
HpaII CCGG 2 cut(s) 61, 107
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 46, 224
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 2 cut(s) 12, 155
LpnPI CCDG 3 cut(s) 74, 120, 194
Lsp1109I GCAGC 1 cut(s) 164
MboII GAAGA 4 cut(s) 82, 98, 155, 239
MluCI AATT 1 cut(s) 138
MnlI CCTC 6 cut(s) 15, 57, 60, 179, 249, 252
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 213, 307
MspI CCGG 2 cut(s) 61, 107
NlaIII CATG 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 45
NsbI TGCGCA 1 cut(s) 13
PagI TCATGA 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 213, 307
SatI GCNGC 1 cut(s) 153
SetI ASST 5 cut(s) 11, 32, 53, 100, 210
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 104
TaqI TCGA 2 cut(s) 93, 225
TaqII GACCGA 1 cut(s) 151
TasI AATT 1 cut(s) 138
Tru1I TTAA 2 cut(s) 213, 307
Tru9I TTAA 2 cut(s) 213, 307
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.