Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

69374830 .. 69375515

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG434100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGTCCTAATCCAGATTGGCACCATACTGTTCACTGCCCCAACCTCACTCCTGCGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGCAGTCGAACGAAGGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGATAGACCACTGGTCTTCAAAATGCTCTTACCTGCTCAAATATCAGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCATGCTGTTACTTATCCCAGTATCAAGGAGCAGCTGATGGAACTGACACTGGCATCAGAGGGCGCAGCTGATGGCACTGGCAACAACGCAAGTACATCAGAGGGCGCAGCTTATTGCACTGGCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.71

Weight (kDa)

8.38

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	162
AhdI	GACNNNNNGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	256, 265
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	334, 368, 410
AluI	AGCT	3 cut(s)	334, 368, 410
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	87, 331, 365, 407
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	3 cut(s)	58, 365, 407
AsuHPI	GGTGA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	99, 343, 377, 419
BccI	CCATC	2 cut(s)	331, 365
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	258, 267
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	4 cut(s)	88, 332, 366, 408
BlsI	GCNGC	4 cut(s)	89, 333, 367, 409
Bme1390I	CCNGG	2 cut(s)	258, 267
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	258, 267
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	237, 362
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	2 cut(s)	44, 281
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BseBI	CCWGG	2 cut(s)	258, 267
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseNI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	99, 343, 377, 419
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 424
BssECI	CCNNGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	258, 267
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	58, 365, 407
BstNI	CCWGG	2 cut(s)	258, 267
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	256, 265
BstV1I	GCAGC	4 cut(s)	99, 343, 377, 419
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	5 cut(s)	34, 151, 347, 375, 417
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	3 cut(s)	58, 365, 407
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	121, 302
CviJI	RGCY	7 cut(s)	70, 104, 125, 207, 334, 368, 410
CviKI_1	RGCY	7 cut(s)	70, 104, 125, 207, 334, 368, 410
CviQI	GTAC	1 cut(s)	393
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	256, 265
FaeI	CATG	2 cut(s)	124, 305
FaiI	YATR	4 cut(s)	27, 122, 132, 303
FatI	CATG	2 cut(s)	120, 301
Fnu4HI	GCNGC	4 cut(s)	88, 332, 366, 408
Fsp4HI	GCNGC	4 cut(s)	88, 332, 366, 408
GlaI	GCGC	3 cut(s)	57, 364, 406
GluI	GCNGC	4 cut(s)	88, 332, 366, 408
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	3 cut(s)	58, 365, 407
Hin1II	CATG	2 cut(s)	124, 305
Hin6I	GCGC	3 cut(s)	56, 363, 405
HinP1I	GCGC	3 cut(s)	56, 363, 405
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	189, 358, 400
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	197, 417
Hsp92II	CATG	2 cut(s)	124, 305
HspAI	GCGC	3 cut(s)	56, 363, 405
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	99, 343, 377, 419
LweI	GCATC	2 cut(s)	237, 362
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	150
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	2 cut(s)	198, 222
MnlI	CCTC	5 cut(s)	56, 183, 235, 352, 394
MroXI	GAANNNNTTC	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	114, 258
MspA1I	CMGCKG	2 cut(s)	334, 368
MspR9I	CCNGG	2 cut(s)	258, 267
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	258, 267
NlaIII	CATG	2 cut(s)	124, 305
NlaIV	GGNNCC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	89, 333, 367, 409
Psp6I	CCWGG	2 cut(s)	256, 265
PspGI	CCWGG	2 cut(s)	256, 265
PspN4I	GGNNCC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	334, 368
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	2 cut(s)	114, 258
SatI	GCNGC	4 cut(s)	88, 332, 366, 408
ScrFI	CCNGG	2 cut(s)	258, 267
SetI	ASST	5 cut(s)	48, 177, 336, 370, 412
SfaNI	GCATC	2 cut(s)	237, 362
SmiMI	CAYNNNNRTG	2 cut(s)	114, 258
SmlI	CTYRAG	2 cut(s)	59, 296
SmoI	CTYRAG	2 cut(s)	59, 296
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	198, 222
StyD4I	CCNGG	2 cut(s)	256, 265
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	198, 222
TatI	WGTACW	1 cut(s)	392
TscAI	CASTG	5 cut(s)	41, 158, 354, 382, 424
TseI	GCWGC	4 cut(s)	87, 331, 365, 407
TspRI	CASTG	5 cut(s)	41, 158, 354, 382, 424
XceI	RCATGY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.