Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

2390 .. 3487

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG000100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCAATGCCAATCCCTAACCGCAGAGCCATGGGCCAGGAACTTGAAGAACAAGCCAGATCGCGCGGTCATCCTCTGATGGCAAGATCTGGGCGAGTTGCCGGAAGGCGAGGGAAAGGGAAAGGGAAGGGGAAGGGGAAAGGCAAAGTGAAGGGGAAAGGGAACAAAGGGAAAATGAAAGCACATGTAAGTGATGATAAGGAAGGACCACCATTGGCTAATTACATCAGACTAAGTGAGTATTCCTTTGGTTGTAAGATGTGTCCTAATCCAGATTGGCACCATACTGTTCACTGCCCCAACCTCACTCCTGCGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGCAGTCGAACGAAGGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGATAGACCACTGGTCTTCAAAATGCTCTTACCTGCTCAAATATCAGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCATGCTGTTACTTATCCCAGTATCAAGGAGCAGCTGATGGAACTGACACTGGCATCAGAGGGCGCAGCTGATGGCACTGGCAACAACGCAAGTACATCAGAGGGCGCAGCTTATTGCACTGGCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.03

Weight (kDa)

9.64

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	279
AccII	CGCG	2 cut(s)	64, 66
AciI	CCGC	2 cut(s)	22, 66
AcoI	YGGCCR	1 cut(s)	463
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	47, 420
AhdI	GACNNNNNGTC	1 cut(s)	412
AjnI	CCWGG	3 cut(s)	36, 514, 523
AleI	CACNNNNGTG	1 cut(s)	516
AluBI	AGCT	3 cut(s)	592, 626, 668
AluI	AGCT	3 cut(s)	592, 626, 668
AoxI	GGCC	2 cut(s)	34, 463
ApeKI	GCWGC	4 cut(s)	345, 589, 623, 665
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	4 cut(s)	66, 316, 623, 665
AspS9I	GGNCC	2 cut(s)	34, 206
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	357, 601, 635, 677
BccI	CCATC	3 cut(s)	73, 589, 623
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	3 cut(s)	38, 516, 525
BfuAI	ACCTGC	1 cut(s)	441
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	4 cut(s)	346, 590, 624, 666
BlsI	GCNGC	4 cut(s)	347, 591, 625, 667
Bme1390I	CCNGG	3 cut(s)	38, 516, 525
Bme18I	GGWCC	1 cut(s)	206
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	34, 206
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	38, 516, 525
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	2 cut(s)	495, 620
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
BpuEI	CTTGAG	2 cut(s)	302, 539
BsaJI	CCNNGG	2 cut(s)	30, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	6 cut(s)	416, 539, 576, 612, 640, 682
BseBI	CCWGG	3 cut(s)	38, 516, 525
BseDI	CCNNGG	2 cut(s)	30, 514
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseNI	ACTGG	6 cut(s)	416, 539, 576, 612, 640, 682
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	357, 601, 635, 677
Bsh1236I	CGCG	2 cut(s)	64, 66
BshFI	GGCC	2 cut(s)	36, 465
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	515
BsnI	GGCC	2 cut(s)	36, 465
Bsp143I	GATC	2 cut(s)	59, 86
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	2 cut(s)	22, 66
BspANI	GGCC	2 cut(s)	36, 465
BspFNI	CGCG	2 cut(s)	64, 66
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	279
BsrI	ACTGG	6 cut(s)	416, 539, 576, 612, 640, 682
BssECI	CCNNGG	2 cut(s)	30, 514
BssMI	GATC	2 cut(s)	59, 86
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	3 cut(s)	38, 516, 525
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	2 cut(s)	64, 66
BstHHI	GCGC	4 cut(s)	66, 316, 623, 665
BstKTI	GATC	2 cut(s)	62, 89
BstMBI	GATC	2 cut(s)	59, 86
BstNI	CCWGG	3 cut(s)	38, 516, 525
BstNSI	RCATGY	2 cut(s)	188, 563
BstSCI	CCNGG	3 cut(s)	36, 514, 523
BstUI	CGCG	2 cut(s)	64, 66
BstV1I	GCAGC	4 cut(s)	357, 601, 635, 677
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	36, 465
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	5 cut(s)	292, 409, 605, 633, 675
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	561
CfoI	GCGC	4 cut(s)	66, 316, 623, 665
Cfr13I	GGNCC	2 cut(s)	34, 206
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	4 cut(s)	31, 185, 379, 560
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	2 cut(s)	61, 88
DpnII	GATC	2 cut(s)	59, 86
DriI	GACNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	463
Eam1105I	GACNNNNNGTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	36, 514, 523
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	34, 188, 382, 563
FaiI	YATR	6 cut(s)	32, 186, 285, 380, 390, 561
FatI	CATG	4 cut(s)	30, 184, 378, 559
Fnu4HI	GCNGC	4 cut(s)	346, 590, 624, 666
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	346, 590, 624, 666
GlaI	GCGC	4 cut(s)	65, 315, 622, 664
GluI	GCNGC	4 cut(s)	346, 590, 624, 666
HaeIII	GGCC	2 cut(s)	36, 465
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	4 cut(s)	66, 316, 623, 665
Hin1II	CATG	4 cut(s)	34, 188, 382, 563
Hin6I	GCGC	4 cut(s)	64, 314, 621, 663
HinP1I	GCGC	4 cut(s)	64, 314, 621, 663
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	5 cut(s)	78, 230, 447, 616, 658
Hpy188III	TCNNGA	2 cut(s)	272, 530
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	6 cut(s)	99, 121, 127, 145, 197, 352
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	455, 675
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	34, 188, 382, 563
HspAI	GCGC	4 cut(s)	64, 314, 621, 663
Kzo9I	GATC	2 cut(s)	59, 86
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	4 cut(s)	357, 601, 635, 677
LweI	GCATC	2 cut(s)	495, 620
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	61, 88
MboI	GATC	2 cut(s)	59, 86
MboII	GAAGA	2 cut(s)	59, 408
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	3 cut(s)	220, 456, 480
MnlI	CCTC	7 cut(s)	84, 104, 314, 441, 493, 610, 652
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	3 cut(s)	189, 372, 516
MspA1I	CMGCKG	2 cut(s)	592, 626
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	38, 516, 525
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	3 cut(s)	38, 516, 525
MvnI	CGCG	2 cut(s)	64, 66
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	59, 86
NlaIII	CATG	4 cut(s)	34, 188, 382, 563
NlaIV	GGNNCC	1 cut(s)	281
NspI	RCATGY	2 cut(s)	188, 563
OliI	CACNNNNGTG	1 cut(s)	516
PaeI	GCATGC	1 cut(s)	563
PciI	ACATGT	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	347, 591, 625, 667
PscI	ACATGT	1 cut(s)	184
Psp6I	CCWGG	3 cut(s)	36, 514, 523
PspGI	CCWGG	3 cut(s)	36, 514, 523
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	34, 206
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	2 cut(s)	592, 626
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
RseI	CAYNNNNRTG	3 cut(s)	189, 372, 516
SatI	GCNGC	4 cut(s)	346, 590, 624, 666
Sau3AI	GATC	2 cut(s)	59, 86
Sau96I	GGNCC	2 cut(s)	34, 206
ScrFI	CCNGG	3 cut(s)	38, 516, 525
SetI	ASST	5 cut(s)	306, 435, 594, 628, 670
SfaNI	GCATC	2 cut(s)	495, 620
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	3 cut(s)	189, 372, 516
SmlI	CTYRAG	2 cut(s)	317, 554
SmoI	CTYRAG	2 cut(s)	317, 554
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	3 cut(s)	220, 456, 480
SsiI	CCGC	2 cut(s)	22, 66
StyD4I	CCNGG	3 cut(s)	36, 514, 523
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	352
TasI	AATT	3 cut(s)	220, 456, 480
TatI	WGTACW	1 cut(s)	650
TscAI	CASTG	5 cut(s)	299, 416, 612, 640, 682
TseI	GCWGC	4 cut(s)	345, 589, 623, 665
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	5 cut(s)	299, 416, 612, 640, 682
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	2 cut(s)	188, 563
XmnI	GAANNNNTTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.