Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

60065533 .. 60067398

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGTGAATATTTAATGGATTGTAAGATGTGTCGTCCTAATCCAGATTGGCACCGGACTTTTCAGTGCCCCAACCTCACTCCTGAGCTCAAGGAAATCCTAAAAGAAGATAGAAGCAAGTTTAGAACATGTAGACCTCTTCGCCCTGAGGACATGGGTTGTCATATAAGTCTGAAGAGAGACCACTGGCCTATATCATGCCCCTACCAGCTCGTATATCCTCCGGGTGCACCTGTTGGCCCTTTTGCTGAGATAGTTTGTTTGTGTTGTGGTGAGGAGAAGCAAGAGCCATTCTCAAGATTTCTCCAACTTATCCCAGTTTCGACTTATATGCAGCTGATGGCGCAAGTGTTTGAAAAGCCGCAGCTGCTGGCACTGACTTGCTTGAATTTTTACGGATTGGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.88

Weight (kDa)

6.79

Isoelectric Point (pI)

71.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	356, 388
AluBI	AGCT	4 cut(s)	88, 211, 337, 367
AluI	AGCT	4 cut(s)	88, 211, 337, 367
Alw21I	GWGCWC	2 cut(s)	90, 232
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	228
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	2 cut(s)	188, 238
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	334, 364, 367
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	2 cut(s)	71, 232
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	90, 232
BbvI	GCAGC	3 cut(s)	346, 354, 376
BccI	CCATC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	409
BisI	GCNGC	4 cut(s)	335, 362, 365, 368
BlsI	GCNGC	4 cut(s)	336, 363, 366, 369
Bme1390I	CCNGG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	74, 280
BpuMI	CCSGG	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	191, 317
Bse21I	CCTNAGG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	75, 138, 240
BseNI	ACTGG	2 cut(s)	191, 317
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	2 cut(s)	71, 232
BseXI	GCAGC	3 cut(s)	346, 354, 376
BshFI	GGCC	2 cut(s)	190, 240
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	90, 232
BsiSI	CCGG	2 cut(s)	55, 224
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	190, 240
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	71, 90, 232
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	190, 240
BspCNI	CTCAG	3 cut(s)	76, 139, 241
BspLI	GGNNCC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	191, 317
Bst6I	CTCTTC	2 cut(s)	144, 170
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	84, 147, 249
BstHHI	GCGC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 367
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	2 cut(s)	71, 232
BstV1I	GCAGC	3 cut(s)	346, 354, 376
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	190, 240
BtsIMutI	CAGTG	3 cut(s)	71, 184, 374
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	3 cut(s)	129, 154, 198
CviJI	RGCY	9 cut(s)	88, 190, 211, 240, 289, 337, 361, 367, 404
CviKI_1	RGCY	9 cut(s)	88, 190, 211, 240, 289, 337, 361, 367, 404
DdeI	CTNAG	3 cut(s)	84, 147, 249
Eam1104I	CTCTTC	2 cut(s)	144, 170
EarI	CTCTTC	2 cut(s)	144, 170
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	3 cut(s)	132, 157, 201
FaiI	YATR	9 cut(s)	130, 155, 165, 167, 194, 199, 217, 330, 332
FatI	CATG	3 cut(s)	128, 153, 197
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	335, 362, 365, 368
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	4 cut(s)	335, 362, 365, 368
FspBI	CTAG	1 cut(s)	409
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	4 cut(s)	335, 362, 365, 368
HaeIII	GGCC	2 cut(s)	190, 240
HapII	CCGG	2 cut(s)	55, 224
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	3 cut(s)	132, 157, 201
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	55, 224
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	134, 230
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	44, 83, 297
Hpy8I	GTNNAC	2 cut(s)	134, 230
HpyCH4V	TGCA	2 cut(s)	230, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 367
HpyF3I	CTNAG	3 cut(s)	84, 147, 249
Hsp92II	CATG	3 cut(s)	132, 157, 201
HspAI	GCGC	1 cut(s)	344
Lsp1109I	GCAGC	3 cut(s)	346, 354, 376
MaeI	CTAG	1 cut(s)	409
MboII	GAAGA	3 cut(s)	119, 131, 187
MhlI	GDGCHC	3 cut(s)	71, 90, 232
MluCI	AATT	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	86, 142, 147, 231, 268
MseI	TTAA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	337, 367
MspI	CCGG	2 cut(s)	55, 224
MspR9I	CCNGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	343, 367
NciI	CCSGG	1 cut(s)	225
NlaIII	CATG	3 cut(s)	132, 157, 201
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	132
PciI	ACATGT	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	336, 363, 366, 369
PscI	ACATGT	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	370
PvuII	CAGCTG	2 cut(s)	337, 367
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	4 cut(s)	335, 362, 365, 368
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	3 cut(s)	71, 90, 232
SetI	ASST	7 cut(s)	78, 90, 139, 213, 235, 339, 369
SmlI	CTYRAG	2 cut(s)	89, 295
SmoI	CTYRAG	2 cut(s)	89, 295
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	11
SspMI	CTAG	1 cut(s)	409
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	223
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	388
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	3 cut(s)	71, 191, 381
TseI	GCWGC	3 cut(s)	334, 364, 367
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	3 cut(s)	71, 191, 381
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.