Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

4893260 .. 4896227

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1037200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCGCCCCAGACACCAGGATCCGGCCGGATCCGTCCCGATCACGAACCGATGCGGCCTACTAAACAACCACGGCTTGCAGAGGTAGAAGAATCGGAGGCGGCAGAGGCACAAGGACCGAAGGCGGCTGAGGCACAAGGACAAAAGGCGGCTGAGGCACAAGGACCAGAAGCGGTTGGGGAACAAGGACCAGAGGCGGACGATCCTGACGAAAAAGATTGGCCGGATTCTGATAGTTCCGAATCAGAGAAGTATGGTACCTGTATAATTTGTTGGAAGGATGACCACACTGTTGCAACCTGCCCCTTGACTTATTTTGTCCCATCCGGGGAGCTTGTCAGCCCTTATGCTGAAATAGTCTGTTGGTGTTGTCAGGAGGACCCAGAAGTAGCCCACCCTGGTGAAATAGTCGCACGGAGAGCTATGGTCAAGCCTGGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.88

Weight (kDa)

4.41

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	7 cut(s)	5, 55, 101, 125, 149, 173, 197
AclWI	GGATC	5 cut(s)	15, 25, 28, 38, 197
AcoI	YGGCCR	2 cut(s)	25, 221
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	23, 328
AjnI	CCWGG	3 cut(s)	16, 397, 433
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	334, 422
AluI	AGCT	2 cut(s)	334, 422
AlwI	GGATC	5 cut(s)	15, 25, 28, 38, 197
AoxI	GGCC	3 cut(s)	25, 56, 221
Asp718I	GGTACC	1 cut(s)	257
AspS9I	GGNCC	4 cut(s)	116, 164, 188, 379
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	4 cut(s)	116, 164, 188, 379
BamHI	GGATCC	2 cut(s)	20, 30
BanI	GGYRCC	1 cut(s)	257
BbvCI	CCTCAGC	2 cut(s)	129, 153
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	3 cut(s)	18, 399, 435
BcnI	CCSGG	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	5 cut(s)	5, 56, 102, 126, 150
BlsI	GCNGC	5 cut(s)	6, 57, 103, 127, 151
Bme1390I	CCNGG	4 cut(s)	18, 328, 399, 435
Bme18I	GGWCC	4 cut(s)	116, 164, 188, 379
BmgT120I	GGNCC	4 cut(s)	116, 164, 188, 379
BmiI	GGNNCC	4 cut(s)	22, 32, 259, 381
BmrFI	CCNGG	4 cut(s)	18, 328, 399, 435
BmsI	GCATC	1 cut(s)	42
Bpu10I	CCTNAGC	2 cut(s)	129, 153
BpuMI	CCSGG	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	71, 327, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 328
BseBI	CCWGG	3 cut(s)	18, 399, 435
BseDI	CCNNGG	3 cut(s)	71, 327, 397
BseGI	GGATG	2 cut(s)	286, 323
BseLI	CCNNNNNNNGG	2 cut(s)	23, 328
BseMII	CTCAG	2 cut(s)	120, 144
BseX3I	CGGCCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	27, 58, 223
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	24, 28, 224, 327
BslFI	GGGAC	2 cut(s)	21, 305
BslI	CCNNNNNNNGG	2 cut(s)	23, 328
BsmFI	GGGAC	2 cut(s)	21, 305
BsnI	GGCC	3 cut(s)	27, 58, 223
Bsp143I	GATC	4 cut(s)	20, 30, 40, 202
BspACI	CCGC	7 cut(s)	5, 55, 101, 125, 149, 173, 197
BspANI	GGCC	3 cut(s)	27, 58, 223
BspCNI	CTCAG	2 cut(s)	121, 145
BspLI	GGNNCC	4 cut(s)	22, 32, 259, 381
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	5 cut(s)	15, 25, 28, 38, 197
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	71, 327, 397
BssMI	GATC	4 cut(s)	20, 30, 40, 202
Bst2UI	CCWGG	3 cut(s)	18, 399, 435
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	129, 153
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	286, 323
BstKTI	GATC	4 cut(s)	23, 33, 43, 205
BstMBI	GATC	4 cut(s)	20, 30, 40, 202
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 131, 155, 419
BstNI	CCWGG	3 cut(s)	18, 399, 435
BstSCI	CCNGG	4 cut(s)	16, 326, 397, 433
BstX2I	RGATCY	2 cut(s)	20, 30
BstYI	RGATCY	2 cut(s)	20, 30
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	27, 58, 223
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	286, 323
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	116, 164, 188, 379
Csp6I	GTAC	1 cut(s)	258
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	129, 153
DpnI	GATC	4 cut(s)	22, 32, 42, 204
DpnII	GATC	4 cut(s)	20, 30, 40, 202
EaeI	YGGCCR	2 cut(s)	25, 221
EagI	CGGCCG	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	25
Eco47I	GGWCC	4 cut(s)	116, 164, 188, 379
Eco52I	CGGCCG	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	16, 397, 433
FaiI	YATR	5 cut(s)	255, 266, 348, 425, 442
FaqI	GGGAC	2 cut(s)	21, 305
Fnu4HI	GCNGC	5 cut(s)	5, 56, 102, 126, 150
FokI	GGATG	2 cut(s)	293, 310
Fsp4HI	GCNGC	5 cut(s)	5, 56, 102, 126, 150
GluI	GCNGC	5 cut(s)	5, 56, 102, 126, 150
HaeIII	GGCC	3 cut(s)	27, 58, 223
HapII	CCGG	4 cut(s)	24, 28, 224, 327
HinfI	GANTC	3 cut(s)	92, 227, 242
HpaII	CCGG	4 cut(s)	24, 28, 224, 327
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	97, 232, 241, 247
Hpy188III	TCNNGA	4 cut(s)	38, 44, 206, 374
HpyAV	CCTTC	2 cut(s)	115, 271
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	80, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 131, 155, 419
HpyF3I	CTNAG	2 cut(s)	129, 153
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	20, 30, 40, 202
LmnI	GCTCC	1 cut(s)	331
LweI	GCATC	1 cut(s)	42
MalI	GATC	4 cut(s)	22, 32, 42, 204
MboI	GATC	4 cut(s)	20, 30, 40, 202
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	2 cut(s)	20, 30
MluCI	AATT	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	76, 91, 100, 124, 148, 187, 370
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	4 cut(s)	24, 28, 224, 327
MspR9I	CCNGG	4 cut(s)	18, 328, 399, 435
MvaI	CCWGG	3 cut(s)	18, 399, 435
MwoI	GCNNNNNNNGC	4 cut(s)	107, 131, 155, 419
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	20, 30, 40, 202
NlaIV	GGNNCC	4 cut(s)	22, 32, 259, 381
OliI	CACNNNNGTG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	92, 227, 242
PkrI	GCNGC	5 cut(s)	6, 57, 103, 127, 151
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	16, 397, 433
PspGI	CCWGG	3 cut(s)	16, 397, 433
PspN4I	GGNNCC	4 cut(s)	22, 32, 259, 381
PspPI	GGNCC	4 cut(s)	116, 164, 188, 379
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	20, 30
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	399
SatI	GCNGC	5 cut(s)	5, 56, 102, 126, 150
Sau3AI	GATC	4 cut(s)	20, 30, 40, 202
Sau96I	GGNCC	4 cut(s)	116, 164, 188, 379
ScrFI	CCNGG	4 cut(s)	18, 328, 399, 435
SetI	ASST	5 cut(s)	87, 263, 302, 336, 424
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	4 cut(s)	116, 164, 188, 379
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	7 cut(s)	5, 55, 101, 125, 149, 173, 197
StyD4I	CCNGG	4 cut(s)	16, 326, 397, 433
TaaI	ACNGT	1 cut(s)	292
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	267
TauI	GCSGC	5 cut(s)	7, 58, 104, 128, 152
TfiI	GAWTC	3 cut(s)	92, 227, 242
TscAI	CASTG	1 cut(s)	295
TspGWI	ACGGA	2 cut(s)	23, 430
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	4 cut(s)	116, 164, 188, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.