zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360 |
| malus_domestica | MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1 |
| pyrus_communis | pycom09g03510 |
| rosa_chinensis | RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971 |
| rosa_laevigata | RLG00000035050 RLG00000035523 |
| rosa_roxburghii | Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750 |
| rosa_rugosa | Rorug05G0345200 Rorug05G0385100 |
| rosa_samantha | Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400 |
| rosa_wichuraiana | Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 260 |
| AgeI | ACCGGT | 2 cut(s) | 156, 177 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 157 |
| AjnI | CCWGG | 2 cut(s) | 259, 268 |
| Alw21I | GWGCWC | 1 cut(s) | 214 |
| Alw26I | GTCTC | 1 cut(s) | 242 |
| AsiGI | ACCGGT | 2 cut(s) | 156, 177 |
| AsuHPI | GGTGA | 2 cut(s) | 113, 254 |
| BauI | CACGAG | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 1 cut(s) | 214 |
| BccI | CCATC | 1 cut(s) | 92 |
| BciT130I | CCWGG | 2 cut(s) | 261, 270 |
| BcoDI | GTCTC | 1 cut(s) | 242 |
| BfaI | CTAG | 2 cut(s) | 113, 307 |
| BisI | GCNGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 2 cut(s) | 261, 270 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 157 |
| BmrFI | CCNGG | 2 cut(s) | 261, 270 |
| BmrI | ACTGGG | 1 cut(s) | 289 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BmuI | ACTGGG | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 1 cut(s) | 259 |
| BsaWI | WCCGGW | 2 cut(s) | 156, 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 260 |
| Bse118I | RCCGGY | 2 cut(s) | 156, 177 |
| Bse1I | ACTGG | 1 cut(s) | 284 |
| BseBI | CCWGG | 2 cut(s) | 261, 270 |
| BseDI | CCNNGG | 1 cut(s) | 259 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BseNI | ACTGG | 1 cut(s) | 284 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BshTI | ACCGGT | 2 cut(s) | 156, 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 214 |
| BsiSI | CCGG | 3 cut(s) | 157, 178, 191 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BsmAI | GTCTC | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 1 cut(s) | 214 |
| BspACI | CCGC | 1 cut(s) | 117 |
| BsrFI | RCCGGY | 2 cut(s) | 156, 177 |
| BsrI | ACTGG | 1 cut(s) | 284 |
| BssAI | RCCGGY | 2 cut(s) | 156, 177 |
| BssECI | CCNNGG | 1 cut(s) | 259 |
| BssSI | CACGAG | 1 cut(s) | 9 |
| Bst2BI | CACGAG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 2 cut(s) | 261, 270 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstMAI | GTCTC | 1 cut(s) | 242 |
| BstNI | CCWGG | 2 cut(s) | 261, 270 |
| BstNSI | RCATGY | 2 cut(s) | 171, 291 |
| BstSCI | CCNGG | 2 cut(s) | 259, 268 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsI | GCAGTG | 1 cut(s) | 295 |
| BtsIMutI | CAGTG | 1 cut(s) | 295 |
| Cfr10I | RCCGGY | 2 cut(s) | 156, 177 |
| Csp6I | GTAC | 1 cut(s) | 175 |
| CspAI | ACCGGT | 2 cut(s) | 156, 177 |
| CviAII | CATG | 2 cut(s) | 168, 288 |
| CviJI | RGCY | 3 cut(s) | 116, 194, 268 |
| CviKI_1 | RGCY | 3 cut(s) | 116, 194, 268 |
| CviQI | GTAC | 1 cut(s) | 175 |
| DriI | GACNNNNNGTC | 1 cut(s) | 157 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 157 |
| EcoRII | CCWGG | 2 cut(s) | 259, 268 |
| EcoT22I | ATGCAT | 2 cut(s) | 169, 289 |
| FaeI | CATG | 2 cut(s) | 171, 291 |
| FaiI | YATR | 6 cut(s) | 96, 135, 165, 169, 187, 289 |
| FatI | CATG | 2 cut(s) | 167, 287 |
| Fnu4HI | GCNGC | 1 cut(s) | 117 |
| FokI | GGATG | 1 cut(s) | 296 |
| Fsp4HI | GCNGC | 1 cut(s) | 117 |
| FspBI | CTAG | 2 cut(s) | 113, 307 |
| GluI | GCNGC | 1 cut(s) | 117 |
| HapII | CCGG | 3 cut(s) | 157, 178, 191 |
| Hin1II | CATG | 2 cut(s) | 171, 291 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HpaII | CCGG | 3 cut(s) | 157, 178, 191 |
| HphI | GGTGA | 2 cut(s) | 113, 254 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 1 cut(s) | 144 |
| Hpy188III | TCNNGA | 1 cut(s) | 11 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| HpyCH4V | TGCA | 3 cut(s) | 167, 200, 287 |
| Hsp92II | CATG | 2 cut(s) | 171, 291 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 2 cut(s) | 113, 307 |
| MfeI | CAATTG | 1 cut(s) | 201 |
| MhlI | GDGCHC | 1 cut(s) | 214 |
| MluCI | AATT | 1 cut(s) | 201 |
| MnlI | CCTC | 2 cut(s) | 18, 238 |
| Mph1103I | ATGCAT | 2 cut(s) | 169, 289 |
| MspI | CCGG | 3 cut(s) | 157, 178, 191 |
| MspR9I | CCNGG | 2 cut(s) | 261, 270 |
| MunI | CAATTG | 1 cut(s) | 201 |
| MvaI | CCWGG | 2 cut(s) | 261, 270 |
| NlaIII | CATG | 2 cut(s) | 171, 291 |
| NsiI | ATGCAT | 2 cut(s) | 169, 289 |
| NspI | RCATGY | 2 cut(s) | 171, 291 |
| PinAI | ACCGGT | 2 cut(s) | 156, 177 |
| PkrI | GCNGC | 1 cut(s) | 118 |
| Psp6I | CCWGG | 2 cut(s) | 259, 268 |
| PspGI | CCWGG | 2 cut(s) | 259, 268 |
| RsaI | GTAC | 1 cut(s) | 176 |
| RsaNI | GTAC | 1 cut(s) | 175 |
| SatI | GCNGC | 1 cut(s) | 117 |
| ScrFI | CCNGG | 2 cut(s) | 261, 270 |
| SduI | GDGCHC | 1 cut(s) | 214 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| Sse9I | AATT | 1 cut(s) | 201 |
| SsiI | CCGC | 1 cut(s) | 117 |
| SspMI | CTAG | 2 cut(s) | 113, 307 |
| StyD4I | CCNGG | 2 cut(s) | 259, 268 |
| TasI | AATT | 1 cut(s) | 201 |
| TauI | GCSGC | 1 cut(s) | 119 |
| TscAI | CASTG | 1 cut(s) | 302 |
| TspDTI | ATGAA | 1 cut(s) | 68 |
| TspGWI | ACGGA | 1 cut(s) | 162 |
| TspRI | CASTG | 1 cut(s) | 302 |
| XceI | RCATGY | 2 cut(s) | 171, 291 |
| XspI | CTAG | 2 cut(s) | 113, 307 |
| Zsp2I | ATGCAT | 2 cut(s) | 169, 289 |